Wall clock time and date at job start Tue Mar 31 2020 13:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47205 * 2 1 4 4 O 1.42902 * 109.47187 * 120.00573 * 2 1 3 5 5 C 1.42895 * 114.00068 * 88.33764 * 4 2 1 6 6 C 1.53043 * 109.46310 * 208.63864 * 5 4 2 7 7 C 1.53189 * 109.31613 * 178.61663 * 6 5 4 8 8 N 1.46928 * 108.77274 * 54.63447 * 7 6 5 9 9 S 1.65598 * 120.62622 * 126.37113 * 8 7 6 10 10 O 1.42101 * 104.27800 * 333.92665 * 9 8 7 11 11 O 1.42106 * 104.27344 * 206.06885 * 9 8 7 12 12 C 1.81399 * 104.45265 * 89.99768 * 9 8 7 13 13 C 1.53001 * 109.47624 * 179.97438 * 12 9 8 14 14 C 1.52999 * 109.47413 * 180.02562 * 13 12 9 15 15 C 1.50700 * 109.47127 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99610 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99617 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99574 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00518 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47170 * 89.99216 * 19 17 15 21 21 H 1.48492 * 109.47158 * 209.99651 * 19 17 15 22 22 H 1.48499 * 109.46696 * 329.99736 * 19 17 15 23 23 C 1.46926 * 118.74152 * 306.64040 * 8 7 6 24 24 C 1.52764 * 109.00503 * 53.31457 * 23 8 7 25 25 H 1.09000 * 109.47149 * 299.99834 * 1 2 3 26 26 H 1.09000 * 109.47230 * 59.99279 * 1 2 3 27 27 H 1.08997 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46510 * 240.00175 * 2 1 3 29 29 H 1.09000 * 109.47165 * 64.35886 * 3 2 1 30 30 H 1.09007 * 109.47333 * 184.35677 * 3 2 1 31 31 H 1.09006 * 109.47682 * 304.35670 * 3 2 1 32 32 H 1.09004 * 109.46261 * 328.61461 * 5 4 2 33 33 H 1.09000 * 109.49075 * 58.66294 * 6 5 4 34 34 H 1.08995 * 109.49394 * 298.57106 * 6 5 4 35 35 H 1.09001 * 109.58644 * 294.84962 * 7 6 5 36 36 H 1.08995 * 109.70156 * 174.49260 * 7 6 5 37 37 H 1.09004 * 109.47081 * 59.99737 * 12 9 8 38 38 H 1.09002 * 109.47353 * 300.00128 * 12 9 8 39 39 H 1.08991 * 109.46642 * 59.99746 * 13 12 9 40 40 H 1.09005 * 109.46418 * 300.00092 * 13 12 9 41 41 H 1.08999 * 109.46925 * 300.00255 * 14 13 12 42 42 H 1.09000 * 109.46723 * 59.99922 * 14 13 12 43 43 H 0.97000 * 119.99922 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.58554 * 173.14333 * 23 8 7 45 45 H 1.08995 * 109.58700 * 293.57286 * 23 8 7 46 46 H 1.09002 * 109.56318 * 185.55419 * 24 23 8 47 47 H 1.09000 * 109.36339 * 65.49676 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.1644 -2.0841 0.9996 6 6 1.9688 -2.7823 2.3474 7 6 2.1047 -4.2964 2.1581 8 7 3.3947 -4.5785 1.5140 9 16 4.4588 -5.6518 2.1908 10 8 4.1474 -5.6270 3.5770 11 8 5.7306 -5.2297 1.7179 12 6 4.0095 -7.2528 1.4660 13 6 4.9327 -8.3403 2.0190 14 6 4.5541 -9.6905 1.4072 15 6 5.4640 -10.7615 1.9515 16 1 6.2348 -10.5048 2.6630 17 6 5.3115 -12.0692 1.5419 18 7 6.1052 -13.0039 2.0174 19 14 3.9777 -12.5133 0.3119 20 1 4.5197 -12.4056 -1.0664 21 1 3.5216 -13.9050 0.5572 22 1 2.8314 -11.5821 0.4671 23 6 3.7253 -3.8857 0.2611 24 6 3.5690 -2.3804 0.4688 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 -0.8901 29 1 1.7418 1.9332 0.9265 30 1 3.1272 1.4434 -0.0781 31 1 1.6143 1.9784 -0.8484 32 1 1.4232 -2.4510 0.2896 33 1 0.9768 -2.5518 2.7358 34 1 2.7253 -2.4342 3.0506 35 1 1.2938 -4.6600 1.5268 36 1 2.0639 -4.7930 3.1275 37 1 4.1152 -7.2035 0.3822 38 1 2.9761 -7.4894 1.7198 39 1 4.8274 -8.3896 3.1027 40 1 5.9659 -8.1034 1.7648 41 1 3.5209 -9.9275 1.6610 42 1 4.6598 -9.6407 0.3235 43 1 5.9982 -13.9238 1.7290 44 1 4.7546 -4.1095 -0.0195 45 1 3.0494 -4.2151 -0.5279 46 1 3.7158 -1.8639 -0.4797 47 1 4.3104 -2.0361 1.1898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609465318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:44 Heat of formation + Delta-G solvation = -140.787110 kcal Electronic energy + Delta-G solvation = -25504.971723 eV Core-core repulsion = 21814.246394 eV Total energy + Delta-G solvation = -3690.725329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.68502 -37.50857 -37.05478 -35.81251 -34.82305 -33.43227 -32.22622 -31.44185 -31.00458 -28.38404 -27.64729 -24.45384 -23.77489 -23.50929 -21.53688 -20.90058 -20.40817 -18.83993 -17.92506 -17.14085 -16.91818 -16.26764 -16.01385 -15.45970 -15.19347 -15.09691 -14.61909 -14.30180 -14.21972 -14.15906 -13.78486 -13.45907 -12.94042 -12.87332 -12.65946 -12.49458 -12.46354 -12.35719 -12.16841 -12.13393 -11.94534 -11.88617 -11.66443 -11.58584 -11.48583 -11.17779 -11.02855 -10.98480 -10.96258 -10.73163 -10.11319 -9.89636 -9.78189 -9.75627 -9.30317 -9.12252 -8.60128 -6.09654 -4.09013 0.32569 2.62430 3.25180 3.25317 3.32802 3.34740 3.93091 4.18037 4.30887 4.38930 4.43112 4.52785 4.63513 4.71920 4.77485 4.81961 4.85718 5.00307 5.02192 5.07560 5.09378 5.18548 5.23929 5.28679 5.37085 5.40704 5.42689 5.46336 5.52218 5.59601 5.73415 5.76258 5.79433 5.84841 5.91906 5.98782 6.11199 6.24667 6.39067 6.65087 6.97197 7.10690 7.24752 7.69604 8.46340 8.94751 9.51314 11.03604 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027910 B = 0.002503 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.966663 B =11182.767167 C =11562.800818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.376 6.376 5 C 0.093 3.907 6 C -0.127 4.127 7 C 0.120 3.880 8 N -1.006 6.006 9 S 2.599 3.401 10 O -0.956 6.956 11 O -0.956 6.956 12 C -0.615 4.615 13 C -0.098 4.098 14 C -0.004 4.004 15 C -0.527 4.527 16 H 0.075 0.925 17 C 0.067 3.933 18 N -0.900 5.900 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.120 3.880 24 C -0.153 4.153 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.020 0.980 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.099 0.901 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.958 26.804 -6.519 30.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.295 6.295 5 C 0.035 3.965 6 C -0.166 4.166 7 C -0.006 4.006 8 N -0.843 5.843 9 S 2.696 3.304 10 O -0.946 6.946 11 O -0.947 6.947 12 C -0.746 4.746 13 C -0.137 4.137 14 C -0.043 4.043 15 C -0.565 4.565 16 H 0.093 0.907 17 C -0.135 4.135 18 N -0.538 5.538 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.006 4.006 24 C -0.193 4.193 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.207 26.949 -5.728 30.135 hybrid contribution -1.180 -0.879 -1.418 2.044 sum -13.387 26.070 -7.146 30.165 Atomic orbital electron populations 1.22324 0.96131 1.02325 1.02550 1.22096 0.93461 0.93858 0.88418 1.21850 1.01763 0.94505 1.02544 1.87981 1.86361 1.19436 1.35759 1.22057 0.95793 0.81228 0.97441 1.21907 1.03490 0.94340 0.96841 1.21432 0.84531 0.95713 0.98874 1.57927 1.32255 1.58032 1.36089 1.05413 0.73843 0.76350 0.74777 1.93565 1.84256 1.86621 1.30191 1.93564 1.38888 1.80179 1.82049 1.30653 1.11081 1.19778 1.13102 1.21319 0.96978 0.94668 1.00770 1.19529 0.97360 0.91516 0.95876 1.21133 1.17117 0.91329 1.26932 0.90720 1.25033 0.95879 0.96408 0.96150 1.69913 1.38409 1.01408 1.44100 0.86765 0.82826 0.77753 0.81850 1.20236 1.21256 1.19077 1.21311 1.02431 0.91633 0.85191 1.22317 0.98441 0.96146 1.02374 0.91781 0.91760 0.92504 0.92271 0.91755 0.92013 0.91366 0.92040 0.90090 0.90343 0.91257 0.88017 0.85471 0.85442 0.90977 0.91014 0.96187 0.96634 0.92618 0.88250 0.91391 0.90708 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.04 9.48 37.16 0.35 -0.69 16 2 C 0.08 0.55 3.12 -26.74 -0.08 0.47 16 3 C -0.15 -0.90 9.56 37.15 0.36 -0.55 16 4 O -0.38 -3.49 9.64 -35.23 -0.34 -3.83 16 5 C 0.09 0.78 2.36 -26.68 -0.06 0.71 16 6 C -0.13 -1.12 5.73 -26.61 -0.15 -1.27 16 7 C 0.12 1.07 6.43 -3.71 -0.02 1.05 16 8 N -1.01 -10.72 3.23 -113.77 -0.37 -11.09 16 9 S 2.60 36.91 5.45 -107.50 -0.59 36.33 16 10 O -0.96 -16.16 16.59 -57.54 -0.95 -17.12 16 11 O -0.96 -16.19 16.58 -57.54 -0.95 -17.14 16 12 C -0.61 -8.73 6.18 37.16 0.23 -8.50 16 13 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 14 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 15 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 16 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 23 C 0.12 1.08 6.40 -3.93 -0.03 1.05 16 24 C -0.15 -1.33 5.64 -26.83 -0.15 -1.48 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.34 7.79 -51.93 -0.40 -0.07 16 28 H 0.06 0.37 7.48 -51.92 -0.39 -0.02 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.44 7.47 -51.93 -0.39 0.05 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 0.96 6.86 -51.93 -0.36 0.61 16 37 H 0.13 1.55 8.14 -51.92 -0.42 1.13 16 38 H 0.13 1.56 8.14 -51.92 -0.42 1.14 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 42 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 43 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.10 0.95 6.85 -51.93 -0.36 0.60 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.53 7.80 -51.93 -0.41 0.13 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -35.13 382.22 -10.15 -45.28 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -8.57 Total: -3.05 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: -0.24 Total: -24.93 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.41 Total: -37.96 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -2.25 Total: -38.09 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 36.91 SS G_CDS: -0.59 Total: 36.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.13 -10.15 -45.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609465318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.512 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds