Wall clock time and date at job start Tue Mar 31 2020 13:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47205 * 2 1 4 4 O 1.42902 * 109.47187 * 120.00573 * 2 1 3 5 5 C 1.42895 * 114.00068 * 88.33764 * 4 2 1 6 6 C 1.53043 * 109.46310 * 208.63864 * 5 4 2 7 7 C 1.53189 * 109.31613 * 178.61663 * 6 5 4 8 8 N 1.46928 * 108.77274 * 54.63447 * 7 6 5 9 9 S 1.65598 * 120.62622 * 126.37113 * 8 7 6 10 10 O 1.42101 * 104.27800 * 333.92665 * 9 8 7 11 11 O 1.42106 * 104.27344 * 206.06885 * 9 8 7 12 12 C 1.81399 * 104.45265 * 89.99768 * 9 8 7 13 13 C 1.53001 * 109.47624 * 179.97438 * 12 9 8 14 14 C 1.52999 * 109.47413 * 180.02562 * 13 12 9 15 15 C 1.50700 * 109.47127 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99610 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99617 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99574 * 180.02562 * 17 15 14 19 19 Si 1.86796 * 120.00518 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47170 * 89.99216 * 19 17 15 21 21 H 1.48492 * 109.47158 * 209.99651 * 19 17 15 22 22 H 1.48499 * 109.46696 * 329.99736 * 19 17 15 23 23 C 1.46926 * 118.74152 * 306.64040 * 8 7 6 24 24 C 1.52764 * 109.00503 * 53.31457 * 23 8 7 25 25 H 1.09000 * 109.47149 * 299.99834 * 1 2 3 26 26 H 1.09000 * 109.47230 * 59.99279 * 1 2 3 27 27 H 1.08997 * 109.47531 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46510 * 240.00175 * 2 1 3 29 29 H 1.09000 * 109.47165 * 64.35886 * 3 2 1 30 30 H 1.09007 * 109.47333 * 184.35677 * 3 2 1 31 31 H 1.09006 * 109.47682 * 304.35670 * 3 2 1 32 32 H 1.09004 * 109.46261 * 328.61461 * 5 4 2 33 33 H 1.09000 * 109.49075 * 58.66294 * 6 5 4 34 34 H 1.08995 * 109.49394 * 298.57106 * 6 5 4 35 35 H 1.09001 * 109.58644 * 294.84962 * 7 6 5 36 36 H 1.08995 * 109.70156 * 174.49260 * 7 6 5 37 37 H 1.09004 * 109.47081 * 59.99737 * 12 9 8 38 38 H 1.09002 * 109.47353 * 300.00128 * 12 9 8 39 39 H 1.08991 * 109.46642 * 59.99746 * 13 12 9 40 40 H 1.09005 * 109.46418 * 300.00092 * 13 12 9 41 41 H 1.08999 * 109.46925 * 300.00255 * 14 13 12 42 42 H 1.09000 * 109.46723 * 59.99922 * 14 13 12 43 43 H 0.97000 * 119.99922 * 180.02562 * 18 17 15 44 44 H 1.09001 * 109.58554 * 173.14333 * 23 8 7 45 45 H 1.08995 * 109.58700 * 293.57286 * 23 8 7 46 46 H 1.09002 * 109.56318 * 185.55419 * 24 23 8 47 47 H 1.09000 * 109.36339 * 65.49676 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.1644 -2.0841 0.9996 6 6 1.9688 -2.7823 2.3474 7 6 2.1047 -4.2964 2.1581 8 7 3.3947 -4.5785 1.5140 9 16 4.4588 -5.6518 2.1908 10 8 4.1474 -5.6270 3.5770 11 8 5.7306 -5.2297 1.7179 12 6 4.0095 -7.2528 1.4660 13 6 4.9327 -8.3403 2.0190 14 6 4.5541 -9.6905 1.4072 15 6 5.4640 -10.7615 1.9515 16 1 6.2348 -10.5048 2.6630 17 6 5.3115 -12.0692 1.5419 18 7 6.1052 -13.0039 2.0174 19 14 3.9777 -12.5133 0.3119 20 1 4.5197 -12.4056 -1.0664 21 1 3.5216 -13.9050 0.5572 22 1 2.8314 -11.5821 0.4671 23 6 3.7253 -3.8857 0.2611 24 6 3.5690 -2.3804 0.4688 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5139 -0.8901 29 1 1.7418 1.9332 0.9265 30 1 3.1272 1.4434 -0.0781 31 1 1.6143 1.9784 -0.8484 32 1 1.4232 -2.4510 0.2896 33 1 0.9768 -2.5518 2.7358 34 1 2.7253 -2.4342 3.0506 35 1 1.2938 -4.6600 1.5268 36 1 2.0639 -4.7930 3.1275 37 1 4.1152 -7.2035 0.3822 38 1 2.9761 -7.4894 1.7198 39 1 4.8274 -8.3896 3.1027 40 1 5.9659 -8.1034 1.7648 41 1 3.5209 -9.9275 1.6610 42 1 4.6598 -9.6407 0.3235 43 1 5.9982 -13.9238 1.7290 44 1 4.7546 -4.1095 -0.0195 45 1 3.0494 -4.2151 -0.5279 46 1 3.7158 -1.8639 -0.4797 47 1 4.3104 -2.0361 1.1898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609465318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:43 Heat of formation + Delta-G solvation = -165.480456 kcal Electronic energy + Delta-G solvation = -25506.042507 eV Core-core repulsion = 21814.246394 eV Total energy + Delta-G solvation = -3691.796113 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.32145 -38.28158 -38.17412 -37.04510 -36.50661 -34.25141 -34.00680 -32.12319 -31.68983 -30.14760 -28.08392 -25.51705 -24.94110 -24.45379 -22.24862 -22.02813 -21.53108 -19.83376 -18.97084 -18.87187 -17.79121 -17.32122 -17.28750 -16.24773 -16.18136 -16.01473 -15.81868 -15.47593 -15.30099 -14.87283 -14.81056 -14.40317 -14.17548 -13.97280 -13.66094 -13.65239 -13.34842 -13.22889 -13.21241 -13.07054 -12.99242 -12.95836 -12.69800 -12.66054 -12.55400 -12.36901 -12.17605 -11.84903 -11.78687 -11.65892 -11.63861 -11.41914 -11.37195 -11.20243 -10.77846 -10.37398 -10.00595 -8.30122 -6.36388 -0.79645 1.36818 1.39784 1.51413 1.65650 2.36395 2.68446 2.83482 3.04835 3.12343 3.54370 3.75920 3.81925 3.90595 3.98356 4.08898 4.15964 4.20165 4.25252 4.33538 4.33785 4.40091 4.46963 4.59250 4.69657 4.75640 4.77805 4.80425 4.84894 4.90462 4.93523 4.94829 4.99526 5.00781 5.16058 5.21654 5.27756 5.33078 5.34753 5.38384 5.45127 5.62102 5.63548 6.24727 6.42719 6.71869 7.28198 8.86862 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027910 B = 0.002503 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.966663 B =11182.767167 C =11562.800818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 C -0.149 4.149 4 O -0.398 6.398 5 C 0.093 3.907 6 C -0.127 4.127 7 C 0.114 3.886 8 N -0.999 5.999 9 S 2.613 3.387 10 O -0.990 6.990 11 O -0.990 6.990 12 C -0.605 4.605 13 C -0.105 4.105 14 C -0.004 4.004 15 C -0.545 4.545 16 H 0.028 0.972 17 C -0.001 4.001 18 N -0.953 5.953 19 Si 0.957 3.043 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.237 1.237 23 C 0.113 3.887 24 C -0.153 4.153 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.033 0.967 42 H 0.032 0.968 43 H 0.267 0.733 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.092 0.908 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 27.835 -9.429 33.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 C -0.207 4.207 4 O -0.318 6.318 5 C 0.036 3.964 6 C -0.167 4.167 7 C -0.010 4.010 8 N -0.838 5.838 9 S 2.711 3.289 10 O -0.980 6.980 11 O -0.981 6.981 12 C -0.736 4.736 13 C -0.144 4.144 14 C -0.043 4.043 15 C -0.583 4.583 16 H 0.046 0.954 17 C -0.198 4.198 18 N -0.593 5.593 19 Si 0.780 3.220 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.160 1.160 23 C -0.011 4.011 24 C -0.192 4.192 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.111 0.889 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.554 28.013 -8.625 33.182 hybrid contribution -0.066 -1.118 -0.446 1.205 sum -15.620 26.895 -9.071 32.398 Atomic orbital electron populations 1.22297 0.95272 1.02587 1.02840 1.22296 0.94182 0.93983 0.88060 1.21872 1.01458 0.94450 1.02875 1.87969 1.86647 1.19992 1.37177 1.22083 0.95942 0.81015 0.97379 1.21913 1.03413 0.94436 0.96907 1.21676 0.84385 0.95682 0.99274 1.57615 1.32358 1.57068 1.36759 1.04693 0.73509 0.76711 0.73993 1.93519 1.84688 1.87232 1.32587 1.93518 1.41300 1.80897 1.82355 1.30532 1.11192 1.17296 1.14610 1.21189 0.97944 0.94929 1.00353 1.19502 0.96570 0.91555 0.96655 1.21561 1.17116 0.93416 1.26216 0.95366 1.26156 0.98859 0.96150 0.98643 1.70092 1.40923 1.02028 1.46241 0.85556 0.79864 0.77836 0.78778 1.18912 1.21178 1.15996 1.21565 1.02983 0.91520 0.85050 1.22317 0.98147 0.96181 1.02568 0.92663 0.90320 0.92227 0.91141 0.92673 0.92659 0.89546 0.89757 0.88673 0.92966 0.87624 0.88882 0.82579 0.82598 0.92071 0.92080 0.94836 0.94973 0.92437 0.89182 0.87747 0.88921 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.48 71.98 0.68 -0.92 16 2 C 0.07 0.84 3.12 30.59 0.10 0.93 16 3 C -0.15 -1.59 9.56 71.98 0.69 -0.90 16 4 O -0.40 -6.79 9.64 -148.98 -1.44 -8.22 16 5 C 0.09 1.34 2.36 30.62 0.07 1.41 16 6 C -0.13 -2.04 5.73 30.67 0.18 -1.86 16 7 C 0.11 1.74 6.43 86.36 0.56 2.30 16 8 N -1.00 -19.03 3.23 -513.85 -1.66 -20.69 16 9 S 2.61 71.89 5.45 -56.49 -0.31 71.58 16 10 O -0.99 -33.63 16.59 -127.65 -2.12 -35.75 16 11 O -0.99 -33.64 16.58 -127.65 -2.12 -35.76 16 12 C -0.60 -15.47 6.18 71.98 0.44 -15.03 16 13 C -0.10 -4.00 5.16 30.59 0.16 -3.84 16 14 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 15 C -0.55 -31.64 9.66 25.60 0.25 -31.39 16 16 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 17 C 0.00 -0.09 5.47 84.65 0.46 0.38 16 18 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 19 Si 0.96 42.88 27.47 68.60 1.88 44.77 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 23 C 0.11 1.72 6.40 86.22 0.55 2.27 16 24 C -0.15 -2.37 5.64 30.53 0.17 -2.19 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.52 7.79 -2.39 -0.02 0.50 16 28 H 0.07 0.66 7.48 -2.38 -0.02 0.64 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.08 0.84 7.47 -2.39 -0.02 0.82 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 1.61 6.86 -2.39 -0.02 1.59 16 37 H 0.16 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.16 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 41 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 42 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.09 1.57 6.85 -2.39 -0.02 1.55 16 45 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.09 1.09 7.80 -2.39 -0.02 1.07 16 47 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -79.50 382.22 -0.17 -79.66 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.86 Total: 13.21 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 4.43 Total: -48.91 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -1.36 Total: -80.58 kcal Atomic # 8 Polarization: -74.06 SS G_CDS: -5.67 Total: -79.73 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.77 kcal Atomic # 16 Polarization: 71.89 SS G_CDS: -0.31 Total: 71.58 kcal Total: -79.50 -0.17 -79.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609465318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.816 kcal (2) G-P(sol) polarization free energy of solvation -79.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds