Wall clock time and date at job start Tue Mar 31 2020 13:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47137 * 2 1 4 4 O 1.21225 * 120.00096 * 359.97438 * 3 2 1 5 5 C 1.47394 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.39812 * 120.02207 * 359.72390 * 5 3 2 7 7 C 1.37773 * 119.96362 * 179.81125 * 6 5 3 8 8 C 1.39564 * 120.03246 * 0.44193 * 7 6 5 9 9 C 1.48072 * 119.97371 * 179.76658 * 8 7 6 10 10 O 1.21519 * 119.99987 * 150.51030 * 9 8 7 11 11 N 1.34773 * 120.00050 * 330.50416 * 9 8 7 12 12 C 1.46502 * 120.00267 * 186.24524 * 11 9 8 13 13 C 1.50700 * 109.47014 * 90.00288 * 12 11 9 14 14 H 1.08003 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99814 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47065 * 89.99436 * 17 15 13 19 19 H 1.48502 * 109.46864 * 209.99915 * 17 15 13 20 20 H 1.48499 * 109.46658 * 329.99529 * 17 15 13 21 21 C 1.46505 * 119.99729 * 6.24584 * 11 9 8 22 22 C 1.53001 * 109.46837 * 98.14112 * 21 11 9 23 23 O 1.42899 * 109.47324 * 64.99991 * 22 21 11 24 24 C 1.42896 * 114.00095 * 179.97438 * 23 22 21 25 25 C 1.39569 * 120.05936 * 359.78908 * 8 7 6 26 26 C 1.37778 * 120.02146 * 359.97438 * 25 8 7 27 27 H 1.09002 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46928 * 299.99856 * 1 2 3 29 29 H 1.09000 * 109.46847 * 60.00104 * 1 2 3 30 30 H 1.08995 * 109.47020 * 120.00348 * 2 1 3 31 31 H 1.08998 * 109.46928 * 240.00144 * 2 1 3 32 32 H 1.07995 * 120.01647 * 0.02562 * 6 5 3 33 33 H 1.08004 * 119.98579 * 180.18615 * 7 6 5 34 34 H 1.09001 * 109.47095 * 210.00018 * 12 11 9 35 35 H 1.08996 * 109.46846 * 330.00431 * 12 11 9 36 36 H 0.97009 * 120.00138 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.47205 * 218.13779 * 21 11 9 38 38 H 1.08997 * 109.47358 * 338.13858 * 21 11 9 39 39 H 1.09007 * 109.46696 * 184.99840 * 22 21 11 40 40 H 1.09003 * 109.47341 * 304.99978 * 22 21 11 41 41 H 1.09004 * 109.46931 * 60.00182 * 24 23 22 42 42 H 1.09001 * 109.47328 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.47528 * 299.99978 * 24 23 22 44 44 H 1.07998 * 119.99273 * 179.97438 * 25 8 7 45 45 H 1.08008 * 120.01066 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2446 2.3422 -0.0005 5 6 3.4815 1.6902 -0.0006 6 6 4.3905 0.6279 0.0047 7 6 5.7447 0.8810 0.0002 8 6 6.2093 2.1971 -0.0002 9 6 7.6651 2.4676 0.0002 10 8 8.0953 3.4790 -0.5182 11 7 8.5131 1.5923 0.5756 12 6 9.9352 1.9224 0.6980 13 6 10.1759 2.6293 2.0070 14 1 9.3519 2.8145 2.6802 15 6 11.4478 3.0405 2.3446 16 7 12.4510 2.8154 1.5246 17 14 11.7464 3.9160 3.9675 18 1 12.0587 2.9156 5.0196 19 1 12.8887 4.8537 3.8212 20 1 10.5291 4.6749 4.3517 21 6 8.0127 0.3106 1.0787 22 6 8.2753 -0.7823 0.0407 23 8 9.6843 -0.9618 -0.1160 24 6 10.0399 -1.9663 -1.0681 25 6 5.3030 3.2584 -0.0006 26 6 3.9482 3.0079 -0.0011 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 4.0312 -0.3906 0.0088 33 1 6.4472 0.0607 0.0013 34 1 10.5249 1.0063 0.6660 35 1 10.2293 2.5729 -0.1257 36 1 13.3461 3.1043 1.7624 37 1 8.5249 0.0599 2.0077 38 1 6.9412 0.3861 1.2636 39 1 7.8249 -1.7169 0.3753 40 1 7.8380 -0.4895 -0.9139 41 1 9.6391 -1.6983 -2.0458 42 1 11.1257 -2.0410 -1.1291 43 1 9.6263 -2.9252 -0.7563 44 1 5.6637 4.2764 -0.0006 45 1 3.2469 3.8294 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000675524061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:08 Heat of formation + Delta-G solvation = -63.010114 kcal Electronic energy + Delta-G solvation = -26847.153270 eV Core-core repulsion = 23024.356653 eV Total energy + Delta-G solvation = -3822.796617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.58296 -39.58364 -37.80682 -37.44792 -35.13055 -33.34501 -32.89611 -31.42537 -31.17006 -29.64005 -27.40554 -26.21530 -25.72423 -23.88788 -22.86949 -22.39905 -22.27488 -19.89777 -19.23239 -17.32636 -17.12083 -16.50274 -16.38437 -15.85651 -15.74695 -15.55633 -15.17195 -14.89610 -14.59886 -14.41564 -14.31708 -13.82443 -13.64647 -13.54108 -13.25723 -12.82983 -12.58103 -12.45884 -12.11243 -12.07208 -11.89187 -11.79189 -11.69864 -11.50423 -11.29673 -10.99798 -10.91296 -10.75261 -10.41918 -10.14183 -9.94314 -9.62277 -9.47353 -9.18317 -9.09060 -8.88786 -8.37186 -7.70088 -5.99262 -4.03683 0.33249 1.21728 2.08343 3.25689 3.32597 3.39059 3.43072 3.67792 3.73268 3.93409 3.95339 4.47426 4.52802 4.66313 4.74255 4.76241 4.77062 4.96920 5.16782 5.21226 5.22080 5.31577 5.35521 5.37814 5.40495 5.46909 5.49265 5.52019 5.53265 5.58553 5.63022 5.82647 5.85014 5.85828 6.02424 6.18484 6.21822 6.30522 6.67565 7.20516 7.28066 7.35103 7.49502 7.60622 7.98113 8.28733 8.36137 8.85203 9.03580 9.60112 11.08780 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.003427 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.486340 B = 8169.455049 C = 9401.779945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.171 4.171 3 C 0.396 3.604 4 O -0.453 6.453 5 C -0.165 4.165 6 C -0.082 4.082 7 C -0.139 4.139 8 C -0.080 4.080 9 C 0.538 3.462 10 O -0.531 6.531 11 N -0.576 5.576 12 C 0.245 3.755 13 C -0.529 4.529 14 H 0.056 0.944 15 C 0.062 3.938 16 N -0.892 5.892 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.077 3.923 22 C 0.038 3.962 23 O -0.365 6.365 24 C 0.031 3.969 25 C -0.080 4.080 26 C -0.067 4.067 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.159 0.841 34 H 0.055 0.945 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.036 0.964 42 H 0.086 0.914 43 H 0.035 0.965 44 H 0.140 0.860 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.259 -12.669 -3.869 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.274 3.726 4 O -0.328 6.328 5 C -0.166 4.166 6 C -0.100 4.100 7 C -0.157 4.157 8 C -0.083 4.083 9 C 0.324 3.676 10 O -0.409 6.409 11 N -0.306 5.306 12 C 0.127 3.873 13 C -0.568 4.568 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.047 4.047 22 C -0.040 4.040 23 O -0.283 6.283 24 C -0.066 4.066 25 C -0.099 4.099 26 C -0.085 4.085 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.153 0.847 33 H 0.176 0.824 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.127 0.873 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.158 0.842 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.053 -11.509 -4.052 21.790 hybrid contribution 0.260 0.164 0.770 0.829 sum -17.793 -11.345 -3.283 21.356 Atomic orbital electron populations 1.21599 0.93650 1.01818 1.03106 1.22000 0.98332 0.95710 1.04777 1.22617 0.87791 0.91252 0.70939 1.90507 1.58336 1.47855 1.36141 1.20595 0.94807 0.94557 1.06661 1.21358 0.92565 0.98596 0.97471 1.22325 0.96344 0.97272 0.99751 1.20631 0.95102 0.93993 0.98615 1.18255 0.85059 0.84159 0.80098 1.90757 1.77918 1.26987 1.45194 1.48113 1.11462 1.15125 1.55912 1.19463 0.72858 0.97633 0.97365 1.21452 0.93741 1.37891 1.03687 0.92616 1.24902 0.95929 0.95924 0.97207 1.69943 1.00055 1.46961 1.36123 0.86532 0.77864 0.79539 0.83679 1.20662 1.21128 1.19956 1.22371 1.01253 0.83440 0.97622 1.23133 0.83732 0.98054 0.99084 1.88155 1.21449 1.57526 1.61158 1.22731 1.01642 0.90444 0.91800 1.21289 0.91896 0.99821 0.96873 1.21372 0.95429 0.96187 0.95523 0.92003 0.92099 0.92138 0.88138 0.88201 0.84709 0.82384 0.92675 0.94032 0.92799 0.89014 0.87309 0.92628 0.93233 0.94505 0.89592 0.94607 0.84175 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.20 37.16 0.34 -0.64 16 2 C -0.17 -1.10 5.03 -27.88 -0.14 -1.24 16 3 C 0.40 4.05 7.12 -30.58 -0.22 3.83 16 4 O -0.45 -6.01 15.96 5.60 0.09 -5.92 16 5 C -0.17 -1.82 5.87 -105.00 -0.62 -2.44 16 6 C -0.08 -0.77 9.46 -39.16 -0.37 -1.14 16 7 C -0.14 -1.67 7.47 -39.26 -0.29 -1.96 16 8 C -0.08 -1.28 5.60 -104.87 -0.59 -1.87 16 9 C 0.54 11.37 7.47 -12.23 -0.09 11.28 16 10 O -0.53 -13.51 16.24 5.35 0.09 -13.42 16 11 N -0.58 -12.18 2.46 -176.09 -0.43 -12.61 16 12 C 0.25 6.48 5.04 -5.19 -0.03 6.45 16 13 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 16 14 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.08 1.21 5.34 -4.04 -0.02 1.18 16 22 C 0.04 0.50 5.05 37.16 0.19 0.69 16 23 O -0.36 -6.08 8.82 -35.23 -0.31 -6.39 16 24 C 0.03 0.38 11.01 101.05 1.11 1.49 16 25 C -0.08 -1.19 9.58 -39.25 -0.38 -1.57 16 26 C -0.07 -0.85 9.58 -39.17 -0.38 -1.22 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.10 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.14 0.76 7.03 -52.49 -0.37 0.39 16 33 H 0.16 1.68 2.57 -52.48 -0.13 1.55 16 34 H 0.06 1.50 6.40 -51.93 -0.33 1.17 16 35 H 0.04 1.25 7.34 -51.93 -0.38 0.87 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 38 H 0.11 1.37 4.05 -52.04 -0.21 1.16 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.63 7.24 -51.93 -0.38 0.25 16 41 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.14 2.15 7.91 -52.49 -0.41 1.73 16 45 H 0.14 1.61 7.64 -52.48 -0.40 1.21 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -35.88 372.78 -7.51 -43.39 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.38 Total: -0.76 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.89 Total: -0.86 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.30 Total: -38.64 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.13 Total: -25.73 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.88 -7.51 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675524061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.623 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds