Wall clock time and date at job start Tue Mar 31 2020 13:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47137 * 2 1 4 4 O 1.21225 * 120.00096 * 359.97438 * 3 2 1 5 5 C 1.47394 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.39812 * 120.02207 * 359.72390 * 5 3 2 7 7 C 1.37773 * 119.96362 * 179.81125 * 6 5 3 8 8 C 1.39564 * 120.03246 * 0.44193 * 7 6 5 9 9 C 1.48072 * 119.97371 * 179.76658 * 8 7 6 10 10 O 1.21519 * 119.99987 * 150.51030 * 9 8 7 11 11 N 1.34773 * 120.00050 * 330.50416 * 9 8 7 12 12 C 1.46502 * 120.00267 * 186.24524 * 11 9 8 13 13 C 1.50700 * 109.47014 * 90.00288 * 12 11 9 14 14 H 1.08003 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99814 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00026 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47065 * 89.99436 * 17 15 13 19 19 H 1.48502 * 109.46864 * 209.99915 * 17 15 13 20 20 H 1.48499 * 109.46658 * 329.99529 * 17 15 13 21 21 C 1.46505 * 119.99729 * 6.24584 * 11 9 8 22 22 C 1.53001 * 109.46837 * 98.14112 * 21 11 9 23 23 O 1.42899 * 109.47324 * 64.99991 * 22 21 11 24 24 C 1.42896 * 114.00095 * 179.97438 * 23 22 21 25 25 C 1.39569 * 120.05936 * 359.78908 * 8 7 6 26 26 C 1.37778 * 120.02146 * 359.97438 * 25 8 7 27 27 H 1.09002 * 109.47188 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46928 * 299.99856 * 1 2 3 29 29 H 1.09000 * 109.46847 * 60.00104 * 1 2 3 30 30 H 1.08995 * 109.47020 * 120.00348 * 2 1 3 31 31 H 1.08998 * 109.46928 * 240.00144 * 2 1 3 32 32 H 1.07995 * 120.01647 * 0.02562 * 6 5 3 33 33 H 1.08004 * 119.98579 * 180.18615 * 7 6 5 34 34 H 1.09001 * 109.47095 * 210.00018 * 12 11 9 35 35 H 1.08996 * 109.46846 * 330.00431 * 12 11 9 36 36 H 0.97009 * 120.00138 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.47205 * 218.13779 * 21 11 9 38 38 H 1.08997 * 109.47358 * 338.13858 * 21 11 9 39 39 H 1.09007 * 109.46696 * 184.99840 * 22 21 11 40 40 H 1.09003 * 109.47341 * 304.99978 * 22 21 11 41 41 H 1.09004 * 109.46931 * 60.00182 * 24 23 22 42 42 H 1.09001 * 109.47328 * 179.97438 * 24 23 22 43 43 H 1.08993 * 109.47528 * 299.99978 * 24 23 22 44 44 H 1.07998 * 119.99273 * 179.97438 * 25 8 7 45 45 H 1.08008 * 120.01066 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2446 2.3422 -0.0005 5 6 3.4815 1.6902 -0.0006 6 6 4.3905 0.6279 0.0047 7 6 5.7447 0.8810 0.0002 8 6 6.2093 2.1971 -0.0002 9 6 7.6651 2.4676 0.0002 10 8 8.0953 3.4790 -0.5182 11 7 8.5131 1.5923 0.5756 12 6 9.9352 1.9224 0.6980 13 6 10.1759 2.6293 2.0070 14 1 9.3519 2.8145 2.6802 15 6 11.4478 3.0405 2.3446 16 7 12.4510 2.8154 1.5246 17 14 11.7464 3.9160 3.9675 18 1 12.0587 2.9156 5.0196 19 1 12.8887 4.8537 3.8212 20 1 10.5291 4.6749 4.3517 21 6 8.0127 0.3106 1.0787 22 6 8.2753 -0.7823 0.0407 23 8 9.6843 -0.9618 -0.1160 24 6 10.0399 -1.9663 -1.0681 25 6 5.3030 3.2584 -0.0006 26 6 3.9482 3.0079 -0.0011 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 4.0312 -0.3906 0.0088 33 1 6.4472 0.0607 0.0013 34 1 10.5249 1.0063 0.6660 35 1 10.2293 2.5729 -0.1257 36 1 13.3461 3.1043 1.7624 37 1 8.5249 0.0599 2.0077 38 1 6.9412 0.3861 1.2636 39 1 7.8249 -1.7169 0.3753 40 1 7.8380 -0.4895 -0.9139 41 1 9.6391 -1.6983 -2.0458 42 1 11.1257 -2.0410 -1.1291 43 1 9.6263 -2.9252 -0.7563 44 1 5.6637 4.2764 -0.0006 45 1 3.2469 3.8294 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000675524061.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:07 Heat of formation + Delta-G solvation = -87.073483 kcal Electronic energy + Delta-G solvation = -26848.196736 eV Core-core repulsion = 23024.356653 eV Total energy + Delta-G solvation = -3823.840083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.76166 -40.68207 -38.89344 -38.77116 -36.72847 -34.94666 -33.96729 -32.72771 -32.17345 -30.91013 -29.21847 -27.22017 -26.84963 -25.24558 -24.17807 -23.68627 -23.31959 -20.85353 -20.54490 -18.69006 -18.45180 -18.24348 -17.53668 -17.08866 -16.76572 -16.62281 -16.40084 -16.15620 -16.10298 -15.62747 -15.51125 -15.03462 -14.73948 -14.69141 -14.37963 -14.18541 -13.90516 -13.47000 -13.38942 -13.13869 -13.06172 -13.04730 -12.80100 -12.73618 -12.57611 -12.52670 -12.21865 -11.98464 -11.94362 -11.82926 -11.70324 -10.91158 -10.65831 -10.63441 -10.49380 -10.11459 -10.00481 -9.47241 -8.20713 -6.35528 -0.68037 0.25197 1.13798 1.35366 1.38671 1.48729 1.90441 2.21677 2.40885 2.74231 2.92101 2.95098 3.09438 3.45797 3.68657 3.85282 4.06190 4.09450 4.20507 4.22006 4.26610 4.35518 4.36685 4.42233 4.44995 4.56064 4.59679 4.64703 4.84216 4.89460 4.91176 4.94740 5.06639 5.08206 5.13660 5.15525 5.26199 5.29712 5.33918 5.40108 5.53448 5.69603 5.84341 6.08074 6.36790 6.52785 6.68245 6.74524 7.21879 7.38009 8.86642 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014021 B = 0.003427 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.486340 B = 8169.455049 C = 9401.779945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.165 4.165 3 C 0.398 3.602 4 O -0.491 6.491 5 C -0.160 4.160 6 C -0.051 4.051 7 C -0.130 4.130 8 C -0.103 4.103 9 C 0.529 3.471 10 O -0.595 6.595 11 N -0.582 5.582 12 C 0.266 3.734 13 C -0.547 4.547 14 H 0.052 0.948 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.968 3.032 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.274 1.274 21 C 0.068 3.932 22 C 0.037 3.963 23 O -0.414 6.414 24 C 0.027 3.973 25 C -0.096 4.096 26 C -0.073 4.073 27 H 0.085 0.915 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.195 0.805 33 H 0.178 0.822 34 H 0.044 0.956 35 H -0.012 1.012 36 H 0.266 0.734 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.998 -16.486 -2.769 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.202 4.202 3 C 0.278 3.722 4 O -0.369 6.369 5 C -0.161 4.161 6 C -0.069 4.069 7 C -0.147 4.147 8 C -0.107 4.107 9 C 0.318 3.682 10 O -0.478 6.478 11 N -0.310 5.310 12 C 0.145 3.855 13 C -0.586 4.586 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.206 1.206 20 H -0.199 1.199 21 C -0.053 4.053 22 C -0.040 4.040 23 O -0.334 6.334 24 C -0.069 4.069 25 C -0.115 4.115 26 C -0.091 4.091 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.212 0.788 33 H 0.195 0.805 34 H 0.062 0.938 35 H 0.007 0.993 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.164 0.836 39 H 0.127 0.873 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.135 0.865 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.822 -15.389 -2.942 26.058 hybrid contribution 1.014 1.314 0.369 1.700 sum -19.808 -14.075 -2.573 24.436 Atomic orbital electron populations 1.21630 0.94287 1.02885 1.01684 1.22122 0.97769 0.92726 1.07568 1.23193 0.86725 0.92912 0.69371 1.90518 1.58926 1.49517 1.37897 1.20964 0.96217 0.94049 1.04903 1.21876 0.90554 1.00734 0.93707 1.22465 0.98071 0.95402 0.98809 1.20227 0.91327 0.96468 1.02654 1.19112 0.87362 0.83006 0.78670 1.90701 1.79518 1.29600 1.47930 1.48056 1.09512 1.17445 1.56007 1.18809 0.76322 0.95690 0.94651 1.21742 0.93973 1.38473 1.04379 0.93022 1.25851 0.95598 0.96517 1.01121 1.70074 1.00564 1.47827 1.38132 0.85421 0.77635 0.78551 0.79217 1.18649 1.20601 1.19850 1.22838 1.03038 0.81502 0.97934 1.23264 0.82777 0.99232 0.98724 1.88083 1.23577 1.59271 1.62436 1.22874 1.01538 0.90980 0.91517 1.21137 0.92972 0.98828 0.98550 1.21399 0.94098 0.97816 0.95758 0.89617 0.93624 0.93649 0.85004 0.85102 0.78782 0.80530 0.93803 0.99341 0.92466 0.90347 0.83619 0.87255 0.92413 0.93764 0.90453 0.91321 0.86509 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.20 71.98 0.66 -0.78 16 2 C -0.17 -1.17 5.03 29.85 0.15 -1.02 16 3 C 0.40 6.67 7.12 28.10 0.20 6.87 16 4 O -0.49 -12.22 15.96 -2.86 -0.05 -12.26 16 5 C -0.16 -2.97 5.87 -20.11 -0.12 -3.09 16 6 C -0.05 -0.68 9.46 22.54 0.21 -0.46 16 7 C -0.13 -2.65 7.47 22.48 0.17 -2.48 16 8 C -0.10 -3.32 5.60 -20.03 -0.11 -3.43 16 9 C 0.53 23.68 7.47 86.85 0.65 24.33 16 10 O -0.60 -33.11 16.24 -3.77 -0.06 -33.17 16 11 N -0.58 -25.61 2.46 -829.31 -2.04 -27.65 16 12 C 0.27 15.02 5.04 85.63 0.43 15.45 16 13 C -0.55 -32.69 9.39 25.60 0.24 -32.45 16 14 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 15 C 0.01 0.48 5.46 84.65 0.46 0.95 16 16 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 17 Si 0.97 46.09 29.54 68.60 2.03 48.11 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 21 C 0.07 2.06 5.34 86.38 0.46 2.52 16 22 C 0.04 0.88 5.05 71.98 0.36 1.24 16 23 O -0.41 -13.56 8.82 -148.98 -1.31 -14.87 16 24 C 0.03 0.62 11.01 113.37 1.25 1.87 16 25 C -0.10 -2.97 9.58 22.48 0.22 -2.75 16 26 C -0.07 -1.80 9.58 22.54 0.22 -1.59 16 27 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.04 0.58 8.10 -2.39 -0.02 0.56 16 29 H 0.04 0.58 8.10 -2.39 -0.02 0.56 16 30 H 0.13 0.23 8.08 -2.39 -0.02 0.21 16 31 H 0.13 0.24 8.09 -2.39 -0.02 0.22 16 32 H 0.20 0.37 7.03 -2.91 -0.02 0.35 16 33 H 0.18 2.94 2.57 -2.91 -0.01 2.94 16 34 H 0.04 2.55 6.40 -2.39 -0.02 2.53 16 35 H -0.01 -0.76 7.34 -2.39 -0.02 -0.78 16 36 H 0.27 15.52 8.31 -92.70 -0.77 14.74 16 37 H 0.08 2.57 8.13 -2.38 -0.02 2.55 16 38 H 0.15 3.22 4.05 -2.49 -0.01 3.21 16 39 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.06 1.28 7.24 -2.39 -0.02 1.26 16 41 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.12 4.03 7.91 -2.91 -0.02 4.01 16 45 H 0.14 3.31 7.64 -2.91 -0.02 3.29 16 Total: -1.00 -88.52 372.78 5.30 -83.22 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 1.00 Total: 8.92 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 5.45 Total: 5.17 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -1.75 Total: -85.11 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -1.42 Total: -60.31 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -88.52 5.30 -83.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000675524061.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.857 kcal (2) G-P(sol) polarization free energy of solvation -88.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds