Wall clock time and date at job start Tue Mar 31 2020 13:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 117.00287 * 2 1 4 4 C 1.37930 * 119.83282 * 0.02562 * 3 2 1 5 5 C 1.39741 * 120.13466 * 179.97438 * 4 3 2 6 6 C 1.47608 * 120.24643 * 179.85611 * 5 4 3 7 7 O 1.21582 * 119.99661 * 179.97438 * 6 5 4 8 8 N 1.34778 * 120.00109 * 359.97419 * 6 5 4 9 9 C 1.46497 * 120.00132 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47141 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47115 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47312 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99912 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99968 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00038 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99994 * 180.02562 * 14 12 11 17 17 H 1.48507 * 109.46802 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47082 * 119.99544 * 16 14 12 19 19 H 1.48492 * 109.47602 * 240.00059 * 16 14 12 20 20 C 1.39786 * 119.50539 * 359.82981 * 5 4 3 21 21 C 1.37395 * 119.96443 * 0.02562 * 20 5 4 22 22 C 1.39051 * 120.96747 * 0.37368 * 21 20 5 23 23 O 1.36087 * 111.17879 * 178.95145 * 22 21 20 24 24 C 1.43767 * 109.23012 * 19.39165 * 23 22 21 25 25 H 1.09005 * 110.74252 * 213.70858 * 24 23 22 26 26 C 1.52994 * 110.74585 * 90.36663 * 24 23 22 27 27 C 1.51679 * 132.01187 * 180.88464 * 21 20 5 28 28 H 1.08997 * 109.47014 * 300.00573 * 1 2 3 29 29 H 1.09001 * 109.46828 * 59.99961 * 1 2 3 30 30 H 1.09000 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.93372 * 0.02562 * 4 3 2 32 32 H 0.97000 * 119.99998 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47538 * 300.00097 * 9 8 6 34 34 H 1.08997 * 109.46694 * 60.00444 * 9 8 6 35 35 H 1.09009 * 109.47274 * 300.00307 * 10 9 8 36 36 H 1.09001 * 109.47410 * 60.00455 * 10 9 8 37 37 H 1.08996 * 109.47362 * 299.99969 * 11 10 9 38 38 H 1.09005 * 109.47294 * 59.99839 * 11 10 9 39 39 H 0.97002 * 119.99346 * 180.02562 * 15 14 12 40 40 H 1.07997 * 120.02124 * 179.97438 * 20 5 4 41 41 H 1.08998 * 109.47750 * 61.44998 * 26 24 23 42 42 H 1.09007 * 109.47290 * 181.45201 * 26 24 23 43 43 H 1.09004 * 109.47045 * 301.44660 * 26 24 23 44 44 H 1.09006 * 110.93858 * 282.54164 * 27 21 20 45 45 H 1.08999 * 110.93731 * 46.22383 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2919 2.3663 0.0005 5 6 1.9198 3.6147 0.0011 6 6 1.1148 4.8519 -0.0016 7 8 1.6658 5.9357 -0.0006 8 7 -0.2311 4.7802 -0.0050 9 6 -1.0301 6.0081 -0.0071 10 6 -2.5173 5.6488 -0.0102 11 6 -3.3518 6.9312 -0.0130 12 6 -4.8167 6.5773 -0.0168 13 1 -5.1219 5.5414 -0.0176 14 6 -5.7671 7.5761 -0.0203 15 7 -5.3953 8.8376 -0.0198 16 14 -7.5829 7.1375 -0.0243 17 1 -7.7353 5.6603 -0.0223 18 1 -8.2314 7.7031 1.1860 19 1 -8.2255 7.7003 -1.2389 20 6 3.3160 3.6831 0.0047 21 6 4.0597 2.5278 0.0071 22 6 3.4444 1.2809 -0.0017 23 8 4.3648 0.2786 -0.0206 24 6 5.6319 0.7909 0.4254 25 1 6.4528 0.2946 -0.0924 26 6 5.7746 0.6393 1.9411 27 6 5.5566 2.2841 0.0285 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2136 2.3054 0.0014 32 1 -0.6707 3.9155 -0.0054 33 1 -0.7999 6.5929 0.8835 34 1 -0.7953 6.5927 -0.8965 35 1 -2.7479 5.0637 -0.9006 36 1 -2.7519 5.0643 0.8794 37 1 -3.1214 7.5165 0.8771 38 1 -3.1172 7.5154 -0.9029 39 1 -6.0641 9.5402 -0.0219 40 1 3.8099 4.6435 0.0047 41 1 5.7334 -0.4171 2.2062 42 1 6.7298 1.0568 2.2597 43 1 4.9624 1.1704 2.4374 44 1 5.9920 2.4476 -0.9573 45 1 6.0426 2.9108 0.7763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728849831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:42 Heat of formation + Delta-G solvation = -116.374464 kcal Electronic energy + Delta-G solvation = -25943.994237 eV Core-core repulsion = 22118.883568 eV Total energy + Delta-G solvation = -3825.110669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.50370 -40.92963 -40.07138 -37.64944 -36.95909 -35.26050 -33.92330 -33.24009 -31.86106 -30.95157 -28.74087 -28.50689 -27.40983 -25.61778 -24.12691 -22.91127 -22.52884 -22.31690 -21.35370 -19.35677 -18.57760 -18.28739 -17.98604 -17.50259 -17.25890 -16.73458 -16.69469 -16.43415 -16.36253 -15.86856 -15.42025 -15.23782 -14.82763 -14.56788 -14.26695 -14.17657 -13.76475 -13.70544 -13.65084 -13.45626 -13.22365 -13.00722 -12.78398 -12.60143 -12.51400 -12.46693 -12.34881 -12.15096 -11.99808 -11.77627 -11.68214 -11.63220 -11.25196 -11.01535 -10.56030 -10.21169 -9.72119 -9.02279 -8.19491 -6.30717 -0.38140 0.15727 1.41989 1.42149 1.55136 1.64799 2.02066 2.13850 2.27027 2.42383 2.62600 3.14550 3.33169 3.50227 3.55449 3.80234 3.94843 4.02639 4.09150 4.12509 4.20430 4.23708 4.29802 4.40183 4.44035 4.53703 4.65297 4.71434 4.75190 4.81273 4.89018 4.93365 4.94571 4.98160 5.08227 5.14470 5.17792 5.24591 5.31722 5.38258 5.52268 5.70669 5.80846 5.84427 6.22065 6.34043 6.46134 6.87068 7.10456 7.38904 8.92805 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023127 B = 0.002247 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.400497 B =12457.206817 C =13459.206446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.328 6.328 3 C 0.094 3.906 4 C -0.135 4.135 5 C -0.134 4.134 6 C 0.558 3.442 7 O -0.580 6.580 8 N -0.708 5.708 9 C 0.129 3.871 10 C -0.102 4.102 11 C 0.023 3.977 12 C -0.538 4.538 13 H 0.067 0.933 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.258 1.258 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.052 4.052 21 C -0.146 4.146 22 C 0.092 3.908 23 O -0.307 6.307 24 C 0.069 3.931 25 H 0.146 0.854 26 C -0.170 4.170 27 C -0.102 4.102 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.162 0.838 32 H 0.412 0.588 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.070 0.930 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.263 0.737 40 H 0.139 0.861 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.045 0.955 44 H 0.111 0.889 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.361 -21.712 1.353 31.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.242 6.242 3 C 0.049 3.951 4 C -0.155 4.155 5 C -0.138 4.138 6 C 0.346 3.654 7 O -0.461 6.461 8 N -0.360 5.360 9 C 0.005 3.995 10 C -0.140 4.140 11 C -0.015 4.015 12 C -0.576 4.576 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.181 1.181 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.071 4.071 21 C -0.147 4.147 22 C 0.045 3.955 23 O -0.221 6.221 24 C 0.014 3.986 25 H 0.163 0.837 26 C -0.228 4.228 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.179 0.821 32 H 0.250 0.750 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.072 0.928 40 H 0.157 0.843 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.064 0.936 44 H 0.130 0.870 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 22.715 -21.217 1.301 31.110 hybrid contribution -1.533 0.390 0.007 1.582 sum 21.183 -20.827 1.308 29.735 Atomic orbital electron populations 1.23457 0.76206 1.06076 1.02611 1.86159 1.23481 1.25437 1.89124 1.18140 0.88489 0.85644 1.02866 1.21200 1.01009 0.89714 1.03545 1.19432 0.93969 0.91806 1.08562 1.18409 0.82418 0.88754 0.75775 1.90757 1.72357 1.30935 1.52059 1.45869 1.05475 1.10643 1.74011 1.21316 0.90911 0.86155 1.01097 1.21614 0.90990 0.99133 1.02289 1.18951 0.94242 0.93149 0.95153 1.21703 0.92366 0.93339 1.50222 0.91439 1.26030 1.04454 0.94883 0.94877 1.70121 1.35403 1.00231 1.51797 0.85367 0.78928 0.78980 0.77563 1.18117 1.20662 1.20665 1.20335 0.91611 0.98392 0.96758 1.20780 0.97519 0.91278 1.05136 1.19219 0.88383 0.88335 0.99525 1.86932 1.19838 1.34101 1.81264 1.23838 0.84338 0.93464 0.96921 0.83664 1.22273 1.03662 1.03297 0.93525 1.22051 0.89773 0.96541 1.05454 0.91323 0.91379 0.86058 0.82055 0.75013 0.92804 0.92823 0.91194 0.91166 0.98883 0.98902 0.92847 0.84327 0.91248 0.88029 0.93594 0.87048 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.92 10.50 -93.48 -0.98 -7.90 16 3 C 0.09 2.11 6.70 22.62 0.15 2.26 16 4 C -0.14 -2.82 8.51 22.56 0.19 -2.63 16 5 C -0.13 -3.38 5.88 -20.07 -0.12 -3.50 16 6 C 0.56 17.29 7.77 86.72 0.67 17.97 16 7 O -0.58 -22.54 16.35 -3.98 -0.07 -22.61 16 8 N -0.71 -20.03 5.51 -466.21 -2.57 -22.60 16 9 C 0.13 4.52 5.67 86.38 0.49 5.01 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.02 1.17 4.97 29.85 0.15 1.32 16 12 C -0.54 -29.64 9.11 25.60 0.23 -29.41 16 13 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 14 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 15 N -0.94 -56.85 13.29 21.45 0.28 -56.57 16 16 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 17 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 C -0.05 -1.21 9.58 22.45 0.21 -0.99 16 21 C -0.15 -2.89 6.25 -19.56 -0.12 -3.01 16 22 C 0.09 2.05 6.88 22.88 0.16 2.21 16 23 O -0.31 -6.35 10.82 -94.53 -1.02 -7.37 16 24 C 0.07 0.81 4.31 31.17 0.13 0.95 16 25 H 0.15 0.89 8.14 -2.38 -0.02 0.87 16 26 C -0.17 -1.72 9.49 71.98 0.68 -1.04 16 27 C -0.10 -1.19 6.65 30.74 0.20 -0.99 16 28 H 0.07 0.73 7.65 -2.39 -0.02 0.71 16 29 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 30 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.16 2.51 4.59 -2.91 -0.01 2.49 16 32 H 0.41 8.78 6.51 -92.71 -0.60 8.18 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 38 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 39 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 40 H 0.14 3.25 7.66 -2.91 -0.02 3.23 16 41 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.04 0.64 8.12 -2.39 -0.02 0.62 16 44 H 0.11 0.99 8.14 -2.38 -0.02 0.98 16 45 H 0.12 0.94 7.92 -2.39 -0.02 0.92 16 Total: -1.00 -75.43 375.32 2.85 -72.57 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.40 Total: 13.13 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.78 Total: -14.12 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.28 Total: -79.17 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -2.07 Total: -37.88 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -75.43 2.85 -72.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728849831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.802 kcal (2) G-P(sol) polarization free energy of solvation -75.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds