Wall clock time and date at job start Tue Mar 31 2020 13:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 117.00049 * 2 1 4 4 C 1.37938 * 119.83183 * 0.27847 * 3 2 1 5 5 C 1.39722 * 120.13063 * 180.23829 * 4 3 2 6 6 C 1.47611 * 120.24779 * 179.58376 * 5 4 3 7 7 O 1.21581 * 120.00450 * 179.72051 * 6 5 4 8 8 N 1.34783 * 119.99634 * 359.71923 * 6 5 4 9 9 C 1.46505 * 119.99652 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.46881 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47119 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.39794 * 119.50620 * 359.30553 * 5 4 3 21 21 C 1.37386 * 119.96185 * 0.24689 * 20 5 4 22 22 C 1.39043 * 120.96980 * 0.38346 * 21 20 5 23 23 O 1.36088 * 111.17746 * 178.96139 * 22 21 20 24 24 C 1.43763 * 109.23545 * 19.40999 * 23 22 21 25 25 H 1.08997 * 110.74849 * 90.52581 * 24 23 22 26 26 C 1.53006 * 110.74637 * 213.69721 * 24 23 22 27 27 C 1.51688 * 132.01021 * 180.91556 * 21 20 5 28 28 H 1.09003 * 109.46948 * 299.99975 * 1 2 3 29 29 H 1.08997 * 109.46752 * 59.99830 * 1 2 3 30 30 H 1.08995 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.93434 * 0.02562 * 4 3 2 32 32 H 0.96993 * 119.99868 * 0.02562 * 8 6 5 33 33 H 1.08998 * 109.46922 * 60.00542 * 9 8 6 34 34 H 1.08994 * 109.47094 * 300.00180 * 9 8 6 35 35 H 1.09004 * 109.46806 * 60.00265 * 10 9 8 36 36 H 1.09000 * 109.47828 * 300.00569 * 10 9 8 37 37 H 1.09004 * 109.47066 * 60.00422 * 11 10 9 38 38 H 1.08994 * 109.47405 * 300.00252 * 11 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 40 40 H 1.07997 * 120.01669 * 180.26938 * 20 5 4 41 41 H 1.08998 * 109.47103 * 58.54237 * 26 24 23 42 42 H 1.08998 * 109.46486 * 178.54489 * 26 24 23 43 43 H 1.08998 * 109.46442 * 298.53987 * 26 24 23 44 44 H 1.09000 * 110.93935 * 282.52055 * 27 21 20 45 45 H 1.08997 * 110.94195 * 46.20488 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2919 2.3665 0.0058 5 6 1.9197 3.6147 0.0008 6 6 1.1146 4.8519 -0.0022 7 8 1.6655 5.9358 -0.0014 8 7 -0.2313 4.7801 -0.0059 9 6 -1.0303 6.0080 -0.0095 10 6 -2.5175 5.6487 -0.0140 11 6 -3.3520 6.9311 -0.0184 12 6 -4.8168 6.5771 -0.0221 13 1 -5.1221 5.5412 -0.0210 14 6 -5.7674 7.5759 -0.0206 15 7 -5.3956 8.8374 -0.0216 16 14 -7.5831 7.1372 -0.0175 17 1 -8.0619 7.0213 1.3834 18 1 -8.3502 8.1994 -0.7164 19 1 -7.7807 5.8422 -0.7168 20 6 3.3160 3.6831 0.0047 21 6 4.0596 2.5279 0.0081 22 6 3.4444 1.2810 0.0000 23 8 4.3648 0.2788 -0.0177 24 6 5.6316 0.7912 0.4289 25 1 5.7337 0.6813 1.5084 26 6 6.7844 0.0941 -0.2965 27 6 5.5566 2.2842 0.0307 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2136 2.3055 0.0108 32 1 -0.6708 3.9154 -0.0062 33 1 -0.7954 6.5918 -0.8996 34 1 -0.8003 6.5938 0.8804 35 1 -2.7527 5.0647 0.8758 36 1 -2.7472 5.0631 -0.9041 37 1 -3.1166 7.5147 -0.9084 38 1 -3.1224 7.5170 0.8715 39 1 -6.0644 9.5401 -0.0209 40 1 3.8098 4.6436 0.0052 41 1 6.6801 0.2425 -1.3713 42 1 7.7321 0.5157 0.0384 43 1 6.7620 -0.9725 -0.0731 44 1 5.9926 2.4469 -0.9550 45 1 6.0422 2.9116 0.7781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728849833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:45 Heat of formation + Delta-G solvation = -94.086203 kcal Electronic energy + Delta-G solvation = -25808.460470 eV Core-core repulsion = 21984.316293 eV Total energy + Delta-G solvation = -3824.144177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67526 -39.82845 -39.19488 -36.74179 -35.45303 -33.45672 -33.28758 -31.86705 -30.86988 -30.10470 -27.87545 -27.20682 -26.33518 -24.15860 -22.66567 -22.14827 -21.86288 -20.77319 -20.08971 -18.39146 -17.85705 -17.32296 -16.73193 -16.44059 -16.15423 -15.73638 -15.32672 -15.31960 -15.15446 -14.48156 -14.13661 -14.01415 -13.92235 -13.62259 -13.47498 -13.28900 -12.82909 -12.66942 -12.46907 -12.31052 -11.88264 -11.87330 -11.81504 -11.77769 -11.54107 -11.34169 -10.99486 -10.91197 -10.76571 -10.62480 -10.01908 -9.90356 -9.43596 -9.14759 -8.97082 -8.83698 -8.39411 -8.17319 -6.03974 -4.07194 0.53908 0.99876 2.64311 2.81994 2.96018 3.26094 3.29082 3.35732 3.38369 3.60135 3.99172 4.11250 4.41948 4.43957 4.50734 4.55857 4.69881 4.83127 4.87767 4.91229 4.92681 5.09186 5.13730 5.20514 5.25624 5.31815 5.37678 5.45412 5.61888 5.66481 5.70420 5.73865 5.90625 6.02094 6.11396 6.15547 6.41588 6.52281 6.55603 6.77878 6.96079 7.10062 7.60815 7.62631 7.73235 7.94458 8.29196 8.35951 8.99304 9.57006 11.07246 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.002190 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.124330 B =12779.735396 C =13855.909665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.311 6.311 3 C 0.106 3.894 4 C -0.143 4.143 5 C -0.118 4.118 6 C 0.556 3.444 7 O -0.538 6.538 8 N -0.720 5.720 9 C 0.116 3.884 10 C -0.121 4.121 11 C 0.024 3.976 12 C -0.523 4.523 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.044 4.044 21 C -0.149 4.149 22 C 0.101 3.899 23 O -0.291 6.291 24 C 0.074 3.926 25 H 0.089 0.911 26 C -0.149 4.149 27 C -0.104 4.104 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.142 0.858 32 H 0.396 0.604 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.142 0.858 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.476 -19.389 0.568 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.225 6.225 3 C 0.060 3.940 4 C -0.162 4.162 5 C -0.122 4.122 6 C 0.343 3.657 7 O -0.417 6.417 8 N -0.371 5.371 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.014 4.014 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.063 4.063 21 C -0.150 4.150 22 C 0.055 3.945 23 O -0.205 6.205 24 C 0.018 3.982 25 H 0.107 0.893 26 C -0.206 4.206 27 C -0.141 4.141 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.160 0.840 32 H 0.230 0.770 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.160 0.840 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.839 -18.837 0.503 29.609 hybrid contribution -1.571 -0.329 0.053 1.606 sum 21.267 -19.166 0.556 28.635 Atomic orbital electron populations 1.23162 0.77983 1.04463 1.01731 1.86178 1.21519 1.25627 1.89157 1.17951 0.88041 0.85281 1.02694 1.21117 1.00073 0.90651 1.04403 1.19649 0.93793 0.92565 1.06183 1.18028 0.82376 0.88348 0.76951 1.90782 1.71640 1.29181 1.50051 1.46128 1.05736 1.10863 1.74354 1.21703 0.91458 0.85199 1.02281 1.21901 0.91172 1.01996 1.00872 1.19031 0.93691 0.90950 0.97728 1.21193 0.91180 0.92710 1.51040 0.92659 1.25037 0.99160 0.95035 0.95271 1.69966 1.33777 0.98981 1.50458 0.86576 0.85118 0.78088 0.78089 1.20665 1.21192 1.19912 1.20283 0.91721 0.97912 0.96404 1.20511 0.95631 0.92303 1.06511 1.18879 0.87920 0.87619 1.00072 1.86909 1.18487 1.33377 1.81709 1.23444 0.83113 0.92231 0.99380 0.89338 1.21888 0.95968 1.01531 1.01262 1.21915 0.91916 0.96185 1.04069 0.92276 0.92264 0.87875 0.84005 0.76983 0.91479 0.91475 0.92707 0.92695 0.96206 0.96219 0.92906 0.84000 0.91332 0.90143 0.91160 0.88546 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.49 10.50 -19.78 -0.21 -3.70 16 3 C 0.11 1.24 6.70 -39.05 -0.26 0.98 16 4 C -0.14 -1.58 8.51 -39.14 -0.33 -1.91 16 5 C -0.12 -1.52 5.88 -104.94 -0.62 -2.13 16 6 C 0.56 8.62 7.77 -12.43 -0.10 8.52 16 7 O -0.54 -10.21 16.35 5.29 0.09 -10.12 16 8 N -0.72 -10.45 5.51 -61.33 -0.34 -10.78 16 9 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 10 C -0.12 -2.32 5.27 -26.74 -0.14 -2.47 16 11 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 12 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 13 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 16 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.04 -0.52 9.58 -39.31 -0.38 -0.90 16 21 C -0.15 -1.57 6.25 -104.15 -0.65 -2.22 16 22 C 0.10 1.20 6.98 -38.64 -0.27 0.93 16 23 O -0.29 -3.26 10.81 -20.04 -0.22 -3.47 16 24 C 0.07 0.54 4.26 -25.83 -0.11 0.43 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 C -0.15 -0.74 9.60 37.16 0.36 -0.39 16 27 C -0.10 -0.74 6.65 -26.50 -0.18 -0.92 16 28 H 0.06 0.38 7.63 -51.93 -0.40 -0.02 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.14 1.24 4.59 -52.48 -0.24 1.00 16 32 H 0.40 4.58 6.51 -40.82 -0.27 4.32 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.14 1.64 7.66 -52.49 -0.40 1.24 16 41 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.59 7.90 -51.93 -0.41 0.18 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -34.20 375.44 -8.29 -42.48 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.73 Total: -0.76 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.26 Total: -9.73 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.40 Total: -36.67 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.34 Total: -17.29 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.20 -8.29 -42.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728849833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.602 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds