Wall clock time and date at job start Tue Mar 31 2020 13:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 117.00049 * 2 1 4 4 C 1.37938 * 119.83183 * 0.27847 * 3 2 1 5 5 C 1.39722 * 120.13063 * 180.23829 * 4 3 2 6 6 C 1.47611 * 120.24779 * 179.58376 * 5 4 3 7 7 O 1.21581 * 120.00450 * 179.72051 * 6 5 4 8 8 N 1.34783 * 119.99634 * 359.71923 * 6 5 4 9 9 C 1.46505 * 119.99652 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.46881 * 179.97438 * 9 8 6 11 11 C 1.52996 * 109.47119 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.39794 * 119.50620 * 359.30553 * 5 4 3 21 21 C 1.37386 * 119.96185 * 0.24689 * 20 5 4 22 22 C 1.39043 * 120.96980 * 0.38346 * 21 20 5 23 23 O 1.36088 * 111.17746 * 178.96139 * 22 21 20 24 24 C 1.43763 * 109.23545 * 19.40999 * 23 22 21 25 25 H 1.08997 * 110.74849 * 90.52581 * 24 23 22 26 26 C 1.53006 * 110.74637 * 213.69721 * 24 23 22 27 27 C 1.51688 * 132.01021 * 180.91556 * 21 20 5 28 28 H 1.09003 * 109.46948 * 299.99975 * 1 2 3 29 29 H 1.08997 * 109.46752 * 59.99830 * 1 2 3 30 30 H 1.08995 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.93434 * 0.02562 * 4 3 2 32 32 H 0.96993 * 119.99868 * 0.02562 * 8 6 5 33 33 H 1.08998 * 109.46922 * 60.00542 * 9 8 6 34 34 H 1.08994 * 109.47094 * 300.00180 * 9 8 6 35 35 H 1.09004 * 109.46806 * 60.00265 * 10 9 8 36 36 H 1.09000 * 109.47828 * 300.00569 * 10 9 8 37 37 H 1.09004 * 109.47066 * 60.00422 * 11 10 9 38 38 H 1.08994 * 109.47405 * 300.00252 * 11 10 9 39 39 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 40 40 H 1.07997 * 120.01669 * 180.26938 * 20 5 4 41 41 H 1.08998 * 109.47103 * 58.54237 * 26 24 23 42 42 H 1.08998 * 109.46486 * 178.54489 * 26 24 23 43 43 H 1.08998 * 109.46442 * 298.53987 * 26 24 23 44 44 H 1.09000 * 110.93935 * 282.52055 * 27 21 20 45 45 H 1.08997 * 110.94195 * 46.20488 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2919 2.3665 0.0058 5 6 1.9197 3.6147 0.0008 6 6 1.1146 4.8519 -0.0022 7 8 1.6655 5.9358 -0.0014 8 7 -0.2313 4.7801 -0.0059 9 6 -1.0303 6.0080 -0.0095 10 6 -2.5175 5.6487 -0.0140 11 6 -3.3520 6.9311 -0.0184 12 6 -4.8168 6.5771 -0.0221 13 1 -5.1221 5.5412 -0.0210 14 6 -5.7674 7.5759 -0.0206 15 7 -5.3956 8.8374 -0.0216 16 14 -7.5831 7.1372 -0.0175 17 1 -8.0619 7.0213 1.3834 18 1 -8.3502 8.1994 -0.7164 19 1 -7.7807 5.8422 -0.7168 20 6 3.3160 3.6831 0.0047 21 6 4.0596 2.5279 0.0081 22 6 3.4444 1.2810 0.0000 23 8 4.3648 0.2788 -0.0177 24 6 5.6316 0.7912 0.4289 25 1 5.7337 0.6813 1.5084 26 6 6.7844 0.0941 -0.2965 27 6 5.5566 2.2842 0.0307 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2136 2.3055 0.0108 32 1 -0.6708 3.9154 -0.0062 33 1 -0.7954 6.5918 -0.8996 34 1 -0.8003 6.5938 0.8804 35 1 -2.7527 5.0647 0.8758 36 1 -2.7472 5.0631 -0.9041 37 1 -3.1166 7.5147 -0.9084 38 1 -3.1224 7.5170 0.8715 39 1 -6.0644 9.5401 -0.0209 40 1 3.8098 4.6436 0.0052 41 1 6.6801 0.2425 -1.3713 42 1 7.7321 0.5157 0.0384 43 1 6.7620 -0.9725 -0.0731 44 1 5.9926 2.4469 -0.9550 45 1 6.0422 2.9116 0.7781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728849833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:44 Heat of formation + Delta-G solvation = -116.396297 kcal Electronic energy + Delta-G solvation = -25809.427908 eV Core-core repulsion = 21984.316293 eV Total energy + Delta-G solvation = -3825.111615 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.46439 -40.91926 -40.06867 -37.66635 -36.96055 -35.25851 -33.96519 -33.29051 -32.03559 -30.94104 -28.76310 -28.50594 -27.22011 -25.54308 -24.11598 -22.77140 -22.64790 -22.30750 -21.36337 -19.32485 -18.66096 -18.54072 -18.09496 -17.61890 -17.04307 -16.75959 -16.67453 -16.43256 -16.33320 -15.88010 -15.42856 -15.18329 -14.74984 -14.34889 -14.31391 -14.17160 -13.90974 -13.75224 -13.60247 -13.41439 -13.33573 -13.01679 -12.75439 -12.59431 -12.53154 -12.47213 -12.37955 -12.15978 -11.97497 -11.74531 -11.67386 -11.62630 -11.26434 -11.01739 -10.54964 -10.21191 -9.73594 -9.03363 -8.19090 -6.30373 -0.39177 0.14586 1.42174 1.43333 1.54205 1.64215 2.00737 2.10727 2.25426 2.42616 2.61319 3.14788 3.30410 3.48084 3.54593 3.79179 3.98267 4.02052 4.08606 4.10704 4.20626 4.20986 4.28914 4.40302 4.46407 4.53886 4.67375 4.71076 4.75016 4.81601 4.85342 4.93580 4.94964 5.01526 5.08451 5.13779 5.17446 5.24141 5.32686 5.38300 5.52274 5.70920 5.80509 5.84537 6.22252 6.33305 6.46059 6.87116 7.10361 7.39090 8.92915 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024618 B = 0.002190 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.124330 B =12779.735396 C =13855.909665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.328 6.328 3 C 0.095 3.905 4 C -0.134 4.134 5 C -0.134 4.134 6 C 0.558 3.442 7 O -0.579 6.579 8 N -0.708 5.708 9 C 0.129 3.871 10 C -0.103 4.103 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.067 0.933 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.260 1.260 20 C -0.051 4.051 21 C -0.148 4.148 22 C 0.091 3.909 23 O -0.310 6.310 24 C 0.067 3.933 25 H 0.100 0.900 26 C -0.145 4.145 27 C -0.101 4.101 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.163 0.837 32 H 0.412 0.588 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.069 0.931 37 H -0.007 1.007 38 H -0.007 1.007 39 H 0.263 0.737 40 H 0.140 0.860 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.607 -21.806 0.696 31.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.242 6.242 3 C 0.050 3.950 4 C -0.153 4.153 5 C -0.137 4.137 6 C 0.347 3.653 7 O -0.461 6.461 8 N -0.360 5.360 9 C 0.005 3.995 10 C -0.140 4.140 11 C -0.015 4.015 12 C -0.578 4.578 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.184 1.184 20 C -0.070 4.070 21 C -0.149 4.149 22 C 0.044 3.956 23 O -0.224 6.224 24 C 0.012 3.988 25 H 0.117 0.883 26 C -0.202 4.202 27 C -0.137 4.137 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.180 0.820 32 H 0.250 0.750 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.071 0.929 40 H 0.158 0.842 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.127 0.873 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 22.968 -21.310 0.633 31.337 hybrid contribution -1.538 0.361 0.020 1.580 sum 21.430 -20.949 0.653 29.975 Atomic orbital electron populations 1.23464 0.76157 1.06096 1.02648 1.86165 1.23527 1.25415 1.89117 1.18122 0.88393 0.85682 1.02834 1.21203 1.01035 0.89665 1.03430 1.19436 0.93955 0.91837 1.08493 1.18402 0.82422 0.88733 0.75786 1.90758 1.72365 1.30916 1.52044 1.45870 1.05464 1.10654 1.74000 1.21318 0.90907 0.86150 1.01106 1.21614 0.90992 0.99136 1.02296 1.18948 0.94229 0.93157 0.95159 1.21680 0.92377 0.93344 1.50377 0.91431 1.26032 1.04448 0.94882 0.94863 1.70115 1.35464 1.00210 1.51690 0.85415 0.78787 0.78221 0.78413 1.19875 1.21152 1.18377 1.20340 0.91623 0.98377 0.96668 1.20789 0.97485 0.91326 1.05302 1.19212 0.88399 0.88267 0.99718 1.86894 1.19754 1.33962 1.81816 1.23777 0.82232 0.92401 1.00375 0.88264 1.21919 0.96066 1.01442 1.00801 1.22051 0.89748 0.96423 1.05497 0.91262 0.91354 0.86058 0.81960 0.74999 0.92826 0.92783 0.91153 0.91192 0.98887 0.98889 0.92856 0.84249 0.91740 0.87635 0.91242 0.87331 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.94 10.50 -93.62 -0.98 -7.93 16 3 C 0.10 2.14 6.70 22.61 0.15 2.29 16 4 C -0.13 -2.79 8.51 22.56 0.19 -2.60 16 5 C -0.13 -3.36 5.88 -20.07 -0.12 -3.48 16 6 C 0.56 17.26 7.77 86.72 0.67 17.93 16 7 O -0.58 -22.49 16.35 -3.97 -0.06 -22.56 16 8 N -0.71 -19.96 5.51 -466.19 -2.57 -22.53 16 9 C 0.13 4.51 5.67 86.38 0.49 5.00 16 10 C -0.10 -3.85 5.27 30.59 0.16 -3.69 16 11 C 0.02 1.17 4.97 29.85 0.15 1.32 16 12 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 13 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 14 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 15 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 16 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 20 C -0.05 -1.19 9.58 22.45 0.21 -0.98 16 21 C -0.15 -2.97 6.25 -19.56 -0.12 -3.10 16 22 C 0.09 2.05 6.98 22.88 0.16 2.21 16 23 O -0.31 -6.61 10.81 -94.54 -1.02 -7.63 16 24 C 0.07 0.85 4.26 31.18 0.13 0.98 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 C -0.15 -1.12 9.60 71.98 0.69 -0.43 16 27 C -0.10 -1.24 6.65 30.74 0.20 -1.03 16 28 H 0.07 0.73 7.63 -2.39 -0.02 0.71 16 29 H 0.07 0.73 7.66 -2.39 -0.02 0.72 16 30 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.16 2.50 4.59 -2.91 -0.01 2.48 16 32 H 0.41 8.73 6.51 -92.71 -0.60 8.12 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 40 H 0.14 3.26 7.66 -2.91 -0.02 3.24 16 41 H 0.06 0.56 8.11 -2.39 -0.02 0.54 16 42 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.11 1.09 7.90 -2.39 -0.02 1.07 16 45 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -75.19 375.44 2.86 -72.33 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.40 Total: 12.97 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 4.79 Total: -13.61 kcal Atomic # 7 Polarization: -76.74 SS G_CDS: -2.28 Total: -79.02 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -2.07 Total: -38.11 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -75.19 2.86 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728849833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.062 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds