Wall clock time and date at job start Tue Mar 31 2020 12:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47192 * 2 1 4 4 C 1.53006 * 109.46523 * 119.99764 * 2 1 3 5 5 N 1.46498 * 109.47321 * 304.99797 * 4 2 1 6 6 C 1.34775 * 119.99904 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00040 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.47436 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.93634 * 269.73208 * 9 8 6 11 11 C 1.38103 * 120.07235 * 179.72038 * 10 9 8 12 12 C 1.38881 * 119.92859 * 0.56979 * 11 10 9 13 13 O 1.35743 * 120.07033 * 179.67702 * 12 11 10 14 14 C 1.34829 * 117.00323 * 174.48588 * 13 12 11 15 15 H 1.08000 * 119.99772 * 5.06302 * 14 13 12 16 16 C 1.38655 * 120.00285 * 185.06067 * 14 13 12 17 17 N 1.31556 * 119.99986 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99817 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47268 * 60.00314 * 18 16 14 20 20 H 1.48504 * 109.46929 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47219 * 300.00047 * 18 16 14 22 22 C 1.38884 * 119.86119 * 359.70391 * 12 11 10 23 23 C 1.38100 * 119.93123 * 0.02562 * 22 12 11 24 24 C 1.52999 * 109.47098 * 239.99519 * 2 1 3 25 25 C 1.53003 * 117.49489 * 128.62534 * 24 2 1 26 26 C 1.52996 * 117.49547 * 60.00698 * 24 2 1 27 27 H 1.09007 * 109.47205 * 300.00325 * 1 2 3 28 28 H 1.09001 * 109.47058 * 59.99857 * 1 2 3 29 29 H 1.08995 * 109.47361 * 179.97438 * 1 2 3 30 30 H 0.96706 * 114.00165 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.46497 * 185.00080 * 4 2 1 32 32 H 1.08996 * 109.47410 * 65.00567 * 4 2 1 33 33 H 0.96999 * 119.99614 * 0.02562 * 5 4 2 34 34 H 1.08999 * 109.47119 * 60.00120 * 8 6 5 35 35 H 1.09004 * 109.47334 * 300.00265 * 8 6 5 36 36 H 1.08004 * 119.96372 * 359.97187 * 10 9 8 37 37 H 1.07998 * 120.03412 * 180.26808 * 11 10 9 38 38 H 0.97002 * 119.99992 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.03050 * 179.97438 * 22 12 11 40 40 H 1.08003 * 119.96708 * 180.02562 * 23 22 12 41 41 H 1.08996 * 115.54904 * 274.32939 * 24 2 1 42 42 H 1.08998 * 117.49949 * 0.02562 * 25 24 2 43 43 H 1.08999 * 117.49785 * 145.01848 * 25 24 2 44 44 H 1.09007 * 117.49465 * 214.97454 * 26 24 2 45 45 H 1.08999 * 117.50118 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.4557 -0.1036 2.4424 6 6 1.7645 -0.5767 3.6660 7 8 2.5264 -1.5135 3.7794 8 6 1.1641 0.0590 4.8933 9 6 1.6662 -0.6515 6.1238 10 6 0.9671 -1.7319 6.6305 11 6 1.4278 -2.3886 7.7546 12 6 2.5881 -1.9557 8.3833 13 8 3.0399 -2.5950 9.4923 14 6 4.2299 -2.1974 9.9860 15 1 4.7391 -1.3502 9.5509 16 6 4.7998 -2.8762 11.0522 17 7 4.1797 -3.9085 11.5819 18 14 6.4482 -2.3248 11.7366 19 1 6.3405 -0.9246 12.2191 20 1 6.8360 -3.2084 12.8655 21 1 7.4782 -2.4030 10.6698 22 6 3.2847 -0.8668 7.8754 23 6 2.8219 -0.2178 6.7477 24 6 2.0400 -0.7213 -1.2492 25 6 3.0742 0.0051 -2.1116 26 6 1.6358 -0.1496 -2.6095 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.9704 1.4236 0.0004 31 1 3.1262 -0.6443 1.2953 32 1 1.7516 -1.7715 1.2057 33 1 0.8467 0.6459 2.3517 34 1 0.0778 -0.0178 4.8478 35 1 1.4526 1.1093 4.9366 36 1 0.0622 -2.0649 6.1441 37 1 0.8838 -3.2349 8.1472 38 1 4.5783 -4.3831 12.3281 39 1 4.1870 -0.5276 8.3624 40 1 3.3634 0.6287 6.3520 41 1 2.1267 -1.8045 -1.1640 42 1 3.3915 0.9966 -1.7888 43 1 3.8417 -0.6003 -2.5940 44 1 1.4569 -0.8567 -3.4196 45 1 1.0062 0.7402 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743713822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:28 Heat of formation + Delta-G solvation = -67.513512 kcal Electronic energy + Delta-G solvation = -25744.997896 eV Core-core repulsion = 21922.005997 eV Total energy + Delta-G solvation = -3822.991899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28040 -39.33967 -38.61597 -36.48595 -35.71756 -34.42024 -32.44111 -31.70474 -30.89657 -30.08760 -27.62273 -26.20260 -25.03395 -23.29417 -22.73779 -21.91032 -20.98083 -20.53625 -19.90380 -17.92353 -17.60139 -17.28109 -16.86459 -16.20462 -15.83146 -15.28818 -14.93247 -14.63005 -14.51180 -14.17686 -14.14299 -13.67716 -13.49372 -13.35649 -13.08516 -12.95992 -12.80124 -12.63899 -12.47438 -12.25680 -11.84594 -11.75910 -11.46477 -11.44126 -11.20931 -10.99912 -10.80684 -10.70441 -10.60131 -10.58262 -10.39399 -10.34862 -9.65677 -9.27248 -9.11651 -8.76575 -8.08759 -7.10151 -6.39460 -3.98001 2.30925 2.32422 2.82303 3.11184 3.16565 3.19273 3.20710 3.30674 3.77822 4.01553 4.12303 4.27586 4.41145 4.58016 4.62494 4.76138 4.85296 5.03833 5.14131 5.19534 5.26774 5.28359 5.32450 5.38278 5.38962 5.41870 5.52139 5.59627 5.66329 5.70965 5.72876 5.78791 5.79391 5.91065 6.27660 6.36254 6.48063 6.76607 6.97805 7.11194 7.15925 7.29888 7.43319 7.49158 7.52536 7.90379 8.05837 8.37276 9.06163 9.77229 10.78666 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.002095 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.015112 B =13362.121480 C =13822.035547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.152 3.848 3 O -0.555 6.555 4 C 0.100 3.900 5 N -0.735 5.735 6 C 0.508 3.492 7 O -0.522 6.522 8 C -0.080 4.080 9 C -0.169 4.169 10 C -0.060 4.060 11 C -0.191 4.191 12 C 0.156 3.844 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.091 0.909 16 C 0.038 3.962 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.232 4.232 23 C -0.057 4.057 24 C -0.186 4.186 25 C -0.177 4.177 26 C -0.165 4.165 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.378 0.622 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.401 0.599 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 10.463 -25.432 28.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.111 3.889 3 O -0.362 6.362 4 C -0.025 4.025 5 N -0.390 5.390 6 C 0.294 3.706 7 O -0.396 6.396 8 C -0.119 4.119 9 C -0.170 4.170 10 C -0.078 4.078 11 C -0.211 4.211 12 C 0.102 3.898 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.166 4.166 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.252 4.252 23 C -0.075 4.075 24 C -0.205 4.205 25 C -0.214 4.214 26 C -0.202 4.202 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.227 0.773 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.236 0.764 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.748 9.531 -24.989 27.583 hybrid contribution 1.289 0.412 0.162 1.362 sum -5.460 9.943 -24.827 27.296 Atomic orbital electron populations 1.21727 0.91799 1.02876 1.02939 1.20888 0.95148 0.81762 0.91147 1.86550 1.27168 1.25692 1.96779 1.21885 0.98632 0.97731 0.84251 1.46037 1.50382 1.37180 1.05402 1.21079 0.81497 0.83722 0.84259 1.90748 1.34745 1.27691 1.86412 1.20400 1.00999 0.99943 0.90599 1.18636 0.99253 1.00998 0.98141 1.20399 0.98246 0.94279 0.94911 1.20153 0.98398 1.03624 0.98901 1.19381 0.92714 0.90823 0.86837 1.83973 1.35448 1.54381 1.34403 1.21275 0.95052 1.14999 1.15376 0.89162 1.25283 0.99506 0.95541 0.96245 1.70033 1.38290 1.18386 1.23198 0.85787 0.80432 0.78596 0.78637 1.19539 1.20314 1.19524 1.21102 1.03657 0.99998 1.00403 1.20510 0.94410 0.98077 0.94526 1.22978 1.05318 1.00030 0.92135 1.22988 0.92757 1.02157 1.03478 1.22892 0.98031 1.03169 0.96149 0.91695 0.91474 0.90723 0.77281 0.91351 0.90765 0.76404 0.89021 0.89019 0.87406 0.86563 0.92039 0.85613 0.87855 0.86899 0.88198 0.88640 0.88800 0.88346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.46 37.16 0.31 -0.54 16 2 C 0.15 1.03 0.88 -90.62 -0.08 0.95 16 3 O -0.55 -3.91 12.08 -35.23 -0.43 -4.33 16 4 C 0.10 0.91 4.80 -4.04 -0.02 0.90 16 5 N -0.73 -7.32 5.19 -60.29 -0.31 -7.63 16 6 C 0.51 7.13 7.82 -10.99 -0.09 7.04 16 7 O -0.52 -10.00 16.03 5.56 0.09 -9.91 16 8 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 9 C -0.17 -3.02 4.38 -104.58 -0.46 -3.48 16 10 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 11 C -0.19 -4.28 9.99 -39.39 -0.39 -4.67 16 12 C 0.16 3.96 6.65 -39.10 -0.26 3.70 16 13 O -0.18 -5.28 9.76 0.07 0.00 -5.28 16 14 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 15 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.91 13.67 55.48 0.76 -25.15 16 18 Si 0.94 21.05 29.55 -169.99 -5.02 16.02 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 22 C -0.23 -5.33 9.17 -39.39 -0.36 -5.69 16 23 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 24 C -0.19 -1.15 5.15 -90.62 -0.47 -1.61 16 25 C -0.18 -0.97 9.74 -26.73 -0.26 -1.23 16 26 C -0.17 -0.93 9.67 -26.73 -0.26 -1.19 16 27 H 0.06 0.40 6.57 -51.93 -0.34 0.05 16 28 H 0.07 0.40 7.29 -51.93 -0.38 0.03 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.38 1.90 7.57 45.56 0.34 2.24 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.40 3.08 6.99 -40.82 -0.29 2.80 16 34 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 40 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 41 H 0.11 0.70 8.11 -51.93 -0.42 0.28 16 42 H 0.10 0.50 6.38 -51.93 -0.33 0.16 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.58 7.61 -51.93 -0.39 0.19 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -35.15 375.21 -8.06 -43.21 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.73 Total: 7.43 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -3.07 Total: -20.02 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.45 Total: -32.78 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.34 Total: -19.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.15 -8.06 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743713822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.299 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds