Wall clock time and date at job start Tue Mar 31 2020 12:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42894 * 109.47192 * 2 1 4 4 C 1.53006 * 109.46523 * 119.99764 * 2 1 3 5 5 N 1.46498 * 109.47321 * 304.99797 * 4 2 1 6 6 C 1.34775 * 119.99904 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00014 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00040 * 179.97438 * 6 5 4 9 9 C 1.50695 * 109.47436 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.93634 * 269.73208 * 9 8 6 11 11 C 1.38103 * 120.07235 * 179.72038 * 10 9 8 12 12 C 1.38881 * 119.92859 * 0.56979 * 11 10 9 13 13 O 1.35743 * 120.07033 * 179.67702 * 12 11 10 14 14 C 1.34829 * 117.00323 * 174.48588 * 13 12 11 15 15 H 1.08000 * 119.99772 * 5.06302 * 14 13 12 16 16 C 1.38655 * 120.00285 * 185.06067 * 14 13 12 17 17 N 1.31556 * 119.99986 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99817 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47268 * 60.00314 * 18 16 14 20 20 H 1.48504 * 109.46929 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47219 * 300.00047 * 18 16 14 22 22 C 1.38884 * 119.86119 * 359.70391 * 12 11 10 23 23 C 1.38100 * 119.93123 * 0.02562 * 22 12 11 24 24 C 1.52999 * 109.47098 * 239.99519 * 2 1 3 25 25 C 1.53003 * 117.49489 * 128.62534 * 24 2 1 26 26 C 1.52996 * 117.49547 * 60.00698 * 24 2 1 27 27 H 1.09007 * 109.47205 * 300.00325 * 1 2 3 28 28 H 1.09001 * 109.47058 * 59.99857 * 1 2 3 29 29 H 1.08995 * 109.47361 * 179.97438 * 1 2 3 30 30 H 0.96706 * 114.00165 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.46497 * 185.00080 * 4 2 1 32 32 H 1.08996 * 109.47410 * 65.00567 * 4 2 1 33 33 H 0.96999 * 119.99614 * 0.02562 * 5 4 2 34 34 H 1.08999 * 109.47119 * 60.00120 * 8 6 5 35 35 H 1.09004 * 109.47334 * 300.00265 * 8 6 5 36 36 H 1.08004 * 119.96372 * 359.97187 * 10 9 8 37 37 H 1.07998 * 120.03412 * 180.26808 * 11 10 9 38 38 H 0.97002 * 119.99992 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.03050 * 179.97438 * 22 12 11 40 40 H 1.08003 * 119.96708 * 180.02562 * 23 22 12 41 41 H 1.08996 * 115.54904 * 274.32939 * 24 2 1 42 42 H 1.08998 * 117.49949 * 0.02562 * 25 24 2 43 43 H 1.08999 * 117.49785 * 145.01848 * 25 24 2 44 44 H 1.09007 * 117.49465 * 214.97454 * 26 24 2 45 45 H 1.08999 * 117.50118 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.4557 -0.1036 2.4424 6 6 1.7645 -0.5767 3.6660 7 8 2.5264 -1.5135 3.7794 8 6 1.1641 0.0590 4.8933 9 6 1.6662 -0.6515 6.1238 10 6 0.9671 -1.7319 6.6305 11 6 1.4278 -2.3886 7.7546 12 6 2.5881 -1.9557 8.3833 13 8 3.0399 -2.5950 9.4923 14 6 4.2299 -2.1974 9.9860 15 1 4.7391 -1.3502 9.5509 16 6 4.7998 -2.8762 11.0522 17 7 4.1797 -3.9085 11.5819 18 14 6.4482 -2.3248 11.7366 19 1 6.3405 -0.9246 12.2191 20 1 6.8360 -3.2084 12.8655 21 1 7.4782 -2.4030 10.6698 22 6 3.2847 -0.8668 7.8754 23 6 2.8219 -0.2178 6.7477 24 6 2.0400 -0.7213 -1.2492 25 6 3.0742 0.0051 -2.1116 26 6 1.6358 -0.1496 -2.6095 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 2.9704 1.4236 0.0004 31 1 3.1262 -0.6443 1.2953 32 1 1.7516 -1.7715 1.2057 33 1 0.8467 0.6459 2.3517 34 1 0.0778 -0.0178 4.8478 35 1 1.4526 1.1093 4.9366 36 1 0.0622 -2.0649 6.1441 37 1 0.8838 -3.2349 8.1472 38 1 4.5783 -4.3831 12.3281 39 1 4.1870 -0.5276 8.3624 40 1 3.3634 0.6287 6.3520 41 1 2.1267 -1.8045 -1.1640 42 1 3.3915 0.9966 -1.7888 43 1 3.8417 -0.6003 -2.5940 44 1 1.4569 -0.8567 -3.4196 45 1 1.0062 0.7402 -2.6145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743713822.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:27 Heat of formation + Delta-G solvation = -92.896140 kcal Electronic energy + Delta-G solvation = -25746.098569 eV Core-core repulsion = 21922.005997 eV Total energy + Delta-G solvation = -3824.092572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21355 -40.65021 -39.87256 -38.19002 -36.34096 -35.24074 -34.39460 -32.99227 -31.83551 -31.73732 -28.71444 -27.58773 -26.69975 -24.02003 -23.62959 -23.15752 -22.37912 -21.41829 -20.76921 -19.84063 -18.88063 -18.30158 -17.95739 -17.08438 -16.78422 -16.44216 -16.23706 -16.10831 -15.70462 -15.50793 -15.47958 -15.09716 -14.81830 -14.56739 -14.39605 -14.15507 -13.67412 -13.63571 -13.52537 -13.27479 -12.96036 -12.90545 -12.70629 -12.45948 -12.29968 -12.27214 -12.23685 -12.13922 -11.97930 -11.45915 -11.17863 -11.13625 -10.98141 -10.81853 -10.67086 -10.06352 -9.75797 -8.89394 -8.47042 -6.15295 0.62005 0.67971 1.33516 1.44848 1.50362 1.74693 2.17661 2.23323 2.81566 2.86129 3.17132 3.27287 3.53079 3.57138 3.75489 3.87756 3.92753 4.06003 4.10740 4.16454 4.21152 4.27679 4.38103 4.49811 4.60183 4.66777 4.72233 4.76968 4.80142 4.81773 4.88070 4.94120 5.07031 5.10105 5.14807 5.22693 5.28211 5.30548 5.31218 5.48835 5.57122 5.72055 5.78790 6.02955 6.23700 6.61874 6.72256 6.97214 7.37012 7.78737 8.76166 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.002095 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.015112 B =13362.121480 C =13822.035547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.163 3.837 3 O -0.560 6.560 4 C 0.099 3.901 5 N -0.713 5.713 6 C 0.509 3.491 7 O -0.582 6.582 8 C -0.078 4.078 9 C -0.145 4.145 10 C -0.058 4.058 11 C -0.207 4.207 12 C 0.111 3.889 13 O -0.233 6.233 14 C -0.415 4.415 15 H 0.100 0.900 16 C -0.025 4.025 17 N -0.921 5.921 18 Si 1.020 2.980 19 H -0.255 1.255 20 H -0.270 1.270 21 H -0.260 1.260 22 C -0.244 4.244 23 C -0.061 4.061 24 C -0.194 4.194 25 C -0.177 4.177 26 C -0.162 4.162 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.387 0.613 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.416 0.584 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.112 0.888 38 H 0.273 0.727 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 13.246 -28.296 32.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.122 3.878 3 O -0.369 6.369 4 C -0.026 4.026 5 N -0.367 5.367 6 C 0.297 3.703 7 O -0.461 6.461 8 C -0.117 4.117 9 C -0.146 4.146 10 C -0.076 4.076 11 C -0.226 4.226 12 C 0.061 3.939 13 O -0.140 6.140 14 C -0.491 4.491 15 H 0.117 0.883 16 C -0.222 4.222 17 N -0.559 5.559 18 Si 0.839 3.161 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.184 1.184 22 C -0.263 4.263 23 C -0.079 4.079 24 C -0.212 4.212 25 C -0.214 4.214 26 C -0.199 4.199 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.237 0.763 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.254 0.746 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.165 0.835 37 H 0.130 0.870 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.459 12.388 -27.936 31.456 hybrid contribution 1.286 -0.319 0.691 1.494 sum -6.173 12.068 -27.245 30.431 Atomic orbital electron populations 1.21770 0.91173 1.03238 1.03402 1.20748 0.95481 0.81496 0.90067 1.86535 1.28122 1.25541 1.96694 1.21950 0.98095 0.97624 0.84892 1.45834 1.49504 1.36825 1.04538 1.21186 0.80680 0.82906 0.85508 1.90755 1.37643 1.30473 1.87269 1.20529 1.03177 1.00855 0.87179 1.19263 0.97342 0.99343 0.98643 1.20884 0.99456 0.93877 0.93380 1.20447 0.97814 1.04196 1.00123 1.19943 0.94447 0.92283 0.87242 1.83933 1.36460 1.56679 1.36959 1.21779 0.95545 1.15700 1.16063 0.88298 1.26628 1.03887 0.95459 0.96257 1.70184 1.40782 1.20479 1.24504 0.84637 0.74692 0.78771 0.78019 1.17908 1.19438 1.18436 1.21230 1.03497 0.99890 1.01728 1.20939 0.95133 0.98653 0.93194 1.22946 1.06169 0.99923 0.92209 1.23073 0.92831 1.02413 1.03082 1.22925 0.98036 1.03134 0.95814 0.91208 0.91058 0.90463 0.76293 0.92410 0.91735 0.74577 0.85107 0.85492 0.83502 0.86978 0.91835 0.86481 0.84449 0.87199 0.87577 0.88343 0.88168 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.46 71.98 0.61 -0.72 16 2 C 0.16 1.81 0.88 -10.79 -0.01 1.80 16 3 O -0.56 -6.23 12.08 -148.98 -1.80 -8.03 16 4 C 0.10 1.61 4.80 86.38 0.41 2.02 16 5 N -0.71 -11.63 5.19 -463.06 -2.40 -14.03 16 6 C 0.51 12.48 7.82 87.66 0.69 13.16 16 7 O -0.58 -21.27 16.03 -3.03 -0.05 -21.32 16 8 C -0.08 -1.59 5.83 29.10 0.17 -1.42 16 9 C -0.14 -4.71 4.38 -19.83 -0.09 -4.80 16 10 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 11 C -0.21 -9.45 9.99 22.39 0.22 -9.23 16 12 C 0.11 5.90 6.65 22.58 0.15 6.05 16 13 O -0.23 -14.79 9.76 -22.66 -0.22 -15.01 16 14 C -0.41 -25.27 9.49 67.92 0.64 -24.63 16 15 H 0.10 5.56 5.20 -2.91 -0.02 5.54 16 16 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 17 N -0.92 -58.34 13.67 21.61 0.30 -58.05 16 18 Si 1.02 44.40 29.55 68.60 2.03 46.43 16 19 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 22 C -0.24 -11.42 9.17 22.39 0.21 -11.22 16 23 C -0.06 -2.26 9.69 22.25 0.22 -2.05 16 24 C -0.19 -2.02 5.15 -10.79 -0.06 -2.07 16 25 C -0.18 -1.60 9.74 30.59 0.30 -1.30 16 26 C -0.16 -1.48 9.67 30.59 0.30 -1.19 16 27 H 0.07 0.59 6.57 -2.38 -0.02 0.57 16 28 H 0.07 0.65 7.29 -2.39 -0.02 0.63 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.39 2.84 7.57 -74.05 -0.56 2.28 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.42 4.44 6.99 -92.71 -0.65 3.80 16 34 H 0.13 1.78 8.08 -2.39 -0.02 1.76 16 35 H 0.13 1.84 8.08 -2.38 -0.02 1.82 16 36 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 37 H 0.11 5.06 8.06 -2.91 -0.02 5.03 16 38 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 39 H 0.12 5.54 5.64 -2.91 -0.02 5.52 16 40 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 41 H 0.11 1.21 8.11 -2.39 -0.02 1.20 16 42 H 0.11 0.81 6.38 -2.39 -0.02 0.80 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 45 H 0.10 0.93 7.61 -2.39 -0.02 0.91 16 Total: -1.00 -83.17 375.21 2.11 -81.06 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: -0.18 Total: 27.41 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 4.44 Total: -38.47 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -2.11 Total: -72.08 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -2.07 Total: -44.35 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -83.17 2.11 -81.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743713822.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.833 kcal (2) G-P(sol) polarization free energy of solvation -83.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds