Wall clock time and date at job start Tue Mar 31 2020 13:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 O 1.42902 * 109.47075 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47020 * 120.00137 * 2 1 3 6 6 C 1.34777 * 120.00304 * 301.13531 * 5 2 1 7 7 O 1.21281 * 119.99426 * 0.02562 * 6 5 2 8 8 C 1.50690 * 120.00164 * 179.97438 * 6 5 2 9 9 C 1.50711 * 109.47248 * 179.97438 * 8 6 5 10 10 C 1.38319 * 119.96220 * 269.72542 * 9 8 6 11 11 C 1.38286 * 120.13513 * 179.76005 * 10 9 8 12 12 C 1.38120 * 120.06702 * 0.51871 * 11 10 9 13 13 C 1.38861 * 119.93253 * 359.73692 * 12 11 10 14 14 O 1.35744 * 120.07127 * 179.97438 * 13 12 11 15 15 C 1.34830 * 116.99993 * 5.32157 * 14 13 12 16 16 H 1.07994 * 120.00058 * 354.90015 * 15 14 13 17 17 C 1.38657 * 119.99975 * 174.89460 * 15 14 13 18 18 N 1.31552 * 120.00093 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99933 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47112 * 90.00300 * 19 17 15 21 21 H 1.48503 * 109.46998 * 209.99815 * 19 17 15 22 22 H 1.48502 * 109.47073 * 330.00023 * 19 17 15 23 23 C 1.38076 * 119.96204 * 89.99719 * 9 8 6 24 24 C 1.53005 * 109.47231 * 240.00095 * 2 1 3 25 25 C 1.52996 * 117.51524 * 354.56787 * 24 2 1 26 26 C 1.52994 * 117.49773 * 63.19831 * 24 2 1 27 27 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47274 * 299.99752 * 1 2 3 29 29 H 1.09005 * 109.47204 * 59.99699 * 1 2 3 30 30 H 1.08993 * 109.47251 * 299.99909 * 3 2 1 31 31 H 1.09004 * 109.47117 * 60.00083 * 3 2 1 32 32 H 0.96700 * 113.99647 * 180.02562 * 4 3 2 33 33 H 0.97007 * 119.99618 * 121.13400 * 5 2 1 34 34 H 1.08999 * 109.47456 * 299.99958 * 8 6 5 35 35 H 1.09005 * 109.47384 * 60.00400 * 8 6 5 36 36 H 1.07997 * 119.93655 * 0.02562 * 10 9 8 37 37 H 1.07998 * 119.96802 * 180.25465 * 11 10 9 38 38 H 1.08001 * 120.03677 * 179.72538 * 12 11 10 39 39 H 0.97001 * 120.00419 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.03798 * 359.96761 * 23 9 8 41 41 H 1.09001 * 115.54836 * 208.86974 * 24 2 1 42 42 H 1.08999 * 117.50011 * 214.96786 * 25 24 2 43 43 H 1.08996 * 117.50071 * 359.97438 * 25 24 2 44 44 H 1.09000 * 117.50428 * 359.97438 * 26 24 2 45 45 H 1.08995 * 117.50167 * 144.99699 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 7 2.0183 -0.6906 1.1961 6 6 1.6739 -0.2438 2.4202 7 8 0.9594 0.7299 2.5313 8 6 2.1757 -0.9545 3.6505 9 6 1.6511 -0.2601 4.8810 10 6 2.3810 0.7611 5.4619 11 6 1.9007 1.4041 6.5881 12 6 0.6951 1.0207 7.1425 13 6 -0.0374 -0.0077 6.5646 14 8 -1.2223 -0.3871 7.1074 15 6 -1.6852 0.3459 8.1401 16 1 -1.0806 1.1402 8.5523 17 6 -2.9375 0.0801 8.6727 18 7 -3.3893 0.7956 9.6799 19 14 -3.9831 -1.2941 7.9599 20 1 -3.6851 -2.5629 8.6717 21 1 -5.4203 -0.9594 8.1257 22 1 -3.6749 -1.4525 6.5159 23 6 0.4452 -0.6479 5.4303 24 6 2.0400 -0.7212 -1.2493 25 6 1.0021 -1.3908 -2.1521 26 6 1.6986 -0.1072 -2.6083 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.8623 2.3258 0.0010 33 1 2.5895 -1.4696 1.1072 34 1 1.8287 -1.9877 3.6402 35 1 3.2656 -0.9373 3.6610 36 1 3.3259 1.0600 5.0327 37 1 2.4708 2.2039 7.0371 38 1 0.3226 1.5202 8.0246 39 1 -4.2653 0.6094 10.0527 40 1 -0.1223 -1.4480 4.9784 41 1 3.0087 -1.2105 -1.1471 42 1 1.2879 -2.3205 -2.6441 43 1 -0.0444 -1.3180 -1.8560 44 1 1.1102 0.8104 -2.6126 45 1 2.4425 -0.1924 -3.4003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000761940671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:37 Heat of formation + Delta-G solvation = -57.142667 kcal Electronic energy + Delta-G solvation = -26740.656936 eV Core-core repulsion = 22918.114751 eV Total energy + Delta-G solvation = -3822.542185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.55121 -39.18654 -38.25565 -36.57744 -36.31977 -34.21069 -32.44385 -32.20617 -30.57629 -29.33719 -27.07453 -26.50332 -25.12525 -24.18492 -22.51783 -21.79130 -21.09906 -19.90798 -19.40910 -17.70782 -17.54306 -17.47247 -16.94650 -16.39599 -15.51007 -15.32753 -15.08702 -14.78945 -14.61149 -14.15183 -13.99321 -13.69943 -13.60203 -13.36141 -13.21979 -12.63423 -12.55261 -12.46407 -12.23053 -12.20672 -12.08633 -11.66498 -11.50552 -11.26061 -11.07887 -10.82442 -10.77408 -10.75523 -10.64385 -10.42659 -10.18502 -10.10871 -9.43574 -9.32433 -9.03495 -8.82100 -8.07988 -7.29487 -6.35889 -4.02505 2.07646 2.35029 2.79410 3.07928 3.26569 3.28347 3.44404 3.53037 4.00035 4.28576 4.28628 4.51069 4.56301 4.66869 4.78683 4.79883 4.97311 5.06394 5.15791 5.17482 5.24522 5.31314 5.38447 5.40858 5.52441 5.53627 5.59014 5.65066 5.74817 5.78258 5.78628 5.81500 5.90903 6.17584 6.18914 6.31517 6.51419 6.59256 6.85294 7.16620 7.27983 7.37798 7.44608 7.54407 7.67724 7.86792 8.10272 8.36871 8.99796 9.63268 10.72083 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017825 B = 0.002966 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.473535 B = 9439.635215 C =10402.976605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.214 3.786 3 C 0.065 3.935 4 O -0.566 6.566 5 N -0.720 5.720 6 C 0.519 3.481 7 O -0.521 6.521 8 C -0.095 4.095 9 C -0.032 4.032 10 C -0.187 4.187 11 C -0.076 4.076 12 C -0.218 4.218 13 C 0.160 3.840 14 O -0.220 6.220 15 C -0.387 4.387 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.174 4.174 24 C -0.148 4.148 25 C -0.184 4.184 26 C -0.168 4.168 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.375 0.625 33 H 0.399 0.601 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.132 0.868 39 H 0.278 0.722 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.118 -3.315 -22.731 26.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.128 3.872 3 C -0.014 4.014 4 O -0.371 6.371 5 N -0.373 5.373 6 C 0.306 3.694 7 O -0.396 6.396 8 C -0.135 4.135 9 C -0.033 4.033 10 C -0.206 4.206 11 C -0.095 4.095 12 C -0.238 4.238 13 C 0.109 3.891 14 O -0.126 6.126 15 C -0.463 4.463 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.193 4.193 24 C -0.166 4.166 25 C -0.221 4.221 26 C -0.206 4.206 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.222 0.778 33 H 0.233 0.767 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.137 -3.394 -22.533 25.818 hybrid contribution -0.108 -0.141 -0.196 0.264 sum 12.028 -3.535 -22.729 25.957 Atomic orbital electron populations 1.22319 0.93410 1.03107 1.03913 1.19695 0.93600 0.90376 0.83512 1.22651 0.81230 0.96443 1.01054 1.86428 1.19534 1.33363 1.97780 1.45971 1.53429 1.33130 1.04774 1.20649 0.80129 0.84549 0.84053 1.90680 1.36091 1.26356 1.86432 1.20596 1.02050 1.00055 0.90757 1.18656 0.94239 0.96351 0.94055 1.20417 1.00961 0.99983 0.99281 1.20731 0.95219 0.98127 0.95376 1.21289 0.96943 1.01684 1.03847 1.19005 0.86325 0.92349 0.91449 1.83563 1.31585 1.51606 1.45807 1.20763 1.02374 1.15705 1.07461 0.87677 1.24451 0.95980 0.98018 0.95568 1.69646 1.19763 1.39201 1.23480 0.86191 0.78631 0.81340 0.80809 1.19929 1.20866 1.18367 1.19932 0.97501 1.04567 0.97347 1.22301 0.99940 1.03846 0.90546 1.23237 0.98740 0.96719 1.03419 1.22903 1.03463 0.97400 0.96795 0.91469 0.89460 0.91867 0.93492 0.91152 0.77833 0.76704 0.88406 0.88367 0.87782 0.87250 0.85047 0.91146 0.86899 0.87208 0.88809 0.87843 0.88771 0.88656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 6.96 37.16 0.26 -1.56 16 2 C 0.21 2.16 0.70 -131.82 -0.09 2.07 16 3 C 0.06 0.69 5.56 37.16 0.21 0.90 16 4 O -0.57 -5.65 13.15 -35.23 -0.46 -6.12 16 5 N -0.72 -7.57 4.97 -47.61 -0.24 -7.80 16 6 C 0.52 7.18 7.24 -10.99 -0.08 7.10 16 7 O -0.52 -9.30 12.24 5.56 0.07 -9.23 16 8 C -0.09 -1.22 5.83 -29.03 -0.17 -1.39 16 9 C -0.03 -0.57 4.37 -104.65 -0.46 -1.03 16 10 C -0.19 -3.32 9.70 -39.53 -0.38 -3.70 16 11 C -0.08 -1.46 10.04 -39.61 -0.40 -1.86 16 12 C -0.22 -4.94 9.17 -39.39 -0.36 -5.30 16 13 C 0.16 3.87 6.65 -39.10 -0.26 3.61 16 14 O -0.22 -6.01 8.59 0.07 0.00 -6.01 16 15 C -0.39 -11.23 9.95 30.89 0.31 -10.92 16 16 H 0.11 3.11 5.44 -52.49 -0.29 2.82 16 17 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 18 N -0.88 -26.05 13.96 55.48 0.77 -25.27 16 19 Si 0.90 22.21 28.62 -169.99 -4.86 17.34 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 23 C -0.17 -3.62 9.65 -39.39 -0.38 -4.00 16 24 C -0.15 -1.19 4.97 -90.62 -0.45 -1.64 16 25 C -0.18 -1.29 9.52 -26.73 -0.25 -1.54 16 26 C -0.17 -1.18 9.38 -26.73 -0.25 -1.43 16 27 H 0.07 0.68 7.14 -51.93 -0.37 0.31 16 28 H 0.09 1.22 6.08 -51.93 -0.32 0.91 16 29 H 0.06 0.57 7.14 -51.93 -0.37 0.20 16 30 H 0.05 0.43 7.09 -51.93 -0.37 0.06 16 31 H 0.07 0.94 6.25 -51.93 -0.32 0.62 16 32 H 0.38 2.39 9.12 45.56 0.42 2.80 16 33 H 0.40 3.18 8.42 -40.82 -0.34 2.84 16 34 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 35 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.13 3.10 5.64 -52.49 -0.30 2.80 16 39 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.11 0.87 8.06 -51.93 -0.42 0.45 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.74 5.83 -51.93 -0.30 0.44 16 44 H 0.09 0.65 7.07 -51.93 -0.37 0.28 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -33.91 366.24 -7.50 -41.41 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.44 Total: 9.16 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.86 Total: -19.00 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.54 Total: -33.07 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.39 Total: -21.36 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.91 -7.50 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761940671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.732 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds