Wall clock time and date at job start Tue Mar 31 2020 13:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 O 1.42902 * 109.47075 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47020 * 120.00137 * 2 1 3 6 6 C 1.34777 * 120.00304 * 301.13531 * 5 2 1 7 7 O 1.21281 * 119.99426 * 0.02562 * 6 5 2 8 8 C 1.50690 * 120.00164 * 179.97438 * 6 5 2 9 9 C 1.50711 * 109.47248 * 179.97438 * 8 6 5 10 10 C 1.38319 * 119.96220 * 269.72542 * 9 8 6 11 11 C 1.38286 * 120.13513 * 179.76005 * 10 9 8 12 12 C 1.38120 * 120.06702 * 0.51871 * 11 10 9 13 13 C 1.38861 * 119.93253 * 359.73692 * 12 11 10 14 14 O 1.35744 * 120.07127 * 179.97438 * 13 12 11 15 15 C 1.34830 * 116.99993 * 5.32157 * 14 13 12 16 16 H 1.07994 * 120.00058 * 354.90015 * 15 14 13 17 17 C 1.38657 * 119.99975 * 174.89460 * 15 14 13 18 18 N 1.31552 * 120.00093 * 180.02562 * 17 15 14 19 19 Si 1.86807 * 119.99933 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47112 * 90.00300 * 19 17 15 21 21 H 1.48503 * 109.46998 * 209.99815 * 19 17 15 22 22 H 1.48502 * 109.47073 * 330.00023 * 19 17 15 23 23 C 1.38076 * 119.96204 * 89.99719 * 9 8 6 24 24 C 1.53005 * 109.47231 * 240.00095 * 2 1 3 25 25 C 1.52996 * 117.51524 * 354.56787 * 24 2 1 26 26 C 1.52994 * 117.49773 * 63.19831 * 24 2 1 27 27 H 1.09000 * 109.47237 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47274 * 299.99752 * 1 2 3 29 29 H 1.09005 * 109.47204 * 59.99699 * 1 2 3 30 30 H 1.08993 * 109.47251 * 299.99909 * 3 2 1 31 31 H 1.09004 * 109.47117 * 60.00083 * 3 2 1 32 32 H 0.96700 * 113.99647 * 180.02562 * 4 3 2 33 33 H 0.97007 * 119.99618 * 121.13400 * 5 2 1 34 34 H 1.08999 * 109.47456 * 299.99958 * 8 6 5 35 35 H 1.09005 * 109.47384 * 60.00400 * 8 6 5 36 36 H 1.07997 * 119.93655 * 0.02562 * 10 9 8 37 37 H 1.07998 * 119.96802 * 180.25465 * 11 10 9 38 38 H 1.08001 * 120.03677 * 179.72538 * 12 11 10 39 39 H 0.97001 * 120.00419 * 180.02562 * 18 17 15 40 40 H 1.07997 * 120.03798 * 359.96761 * 23 9 8 41 41 H 1.09001 * 115.54836 * 208.86974 * 24 2 1 42 42 H 1.08999 * 117.50011 * 214.96786 * 25 24 2 43 43 H 1.08996 * 117.50071 * 359.97438 * 25 24 2 44 44 H 1.09000 * 117.50428 * 359.97438 * 26 24 2 45 45 H 1.08995 * 117.50167 * 144.99699 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 7 2.0183 -0.6906 1.1961 6 6 1.6739 -0.2438 2.4202 7 8 0.9594 0.7299 2.5313 8 6 2.1757 -0.9545 3.6505 9 6 1.6511 -0.2601 4.8810 10 6 2.3810 0.7611 5.4619 11 6 1.9007 1.4041 6.5881 12 6 0.6951 1.0207 7.1425 13 6 -0.0374 -0.0077 6.5646 14 8 -1.2223 -0.3871 7.1074 15 6 -1.6852 0.3459 8.1401 16 1 -1.0806 1.1402 8.5523 17 6 -2.9375 0.0801 8.6727 18 7 -3.3893 0.7956 9.6799 19 14 -3.9831 -1.2941 7.9599 20 1 -3.6851 -2.5629 8.6717 21 1 -5.4203 -0.9594 8.1257 22 1 -3.6749 -1.4525 6.5159 23 6 0.4452 -0.6479 5.4303 24 6 2.0400 -0.7212 -1.2493 25 6 1.0021 -1.3908 -2.1521 26 6 1.6986 -0.1072 -2.6083 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.8623 2.3258 0.0010 33 1 2.5895 -1.4696 1.1072 34 1 1.8287 -1.9877 3.6402 35 1 3.2656 -0.9373 3.6610 36 1 3.3259 1.0600 5.0327 37 1 2.4708 2.2039 7.0371 38 1 0.3226 1.5202 8.0246 39 1 -4.2653 0.6094 10.0527 40 1 -0.1223 -1.4480 4.9784 41 1 3.0087 -1.2105 -1.1471 42 1 1.2879 -2.3205 -2.6441 43 1 -0.0444 -1.3180 -1.8560 44 1 1.1102 0.8104 -2.6126 45 1 2.4425 -0.1924 -3.4003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761940671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:36 Heat of formation + Delta-G solvation = -81.794714 kcal Electronic energy + Delta-G solvation = -26741.725929 eV Core-core repulsion = 22918.114751 eV Total energy + Delta-G solvation = -3823.611178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52137 -40.80159 -39.31669 -38.17860 -37.05668 -35.11172 -34.48598 -33.60979 -31.61289 -30.98402 -28.36670 -27.37878 -27.14323 -24.99375 -23.37081 -23.04250 -22.61822 -21.09384 -20.25297 -19.63764 -18.88266 -18.32111 -18.19001 -17.28396 -16.87382 -16.77483 -16.19548 -16.08201 -15.72639 -15.61478 -15.43292 -15.19663 -14.79543 -14.59808 -14.33865 -14.16182 -14.08016 -13.87276 -13.37905 -13.17246 -13.05025 -12.95997 -12.70966 -12.54544 -12.39676 -12.33537 -12.16304 -11.93345 -11.82232 -11.38062 -11.31162 -11.06620 -10.98155 -10.91520 -10.46837 -9.95450 -9.65341 -9.06031 -8.50699 -6.23460 0.49553 0.70334 1.28972 1.34302 1.50159 1.76248 2.18560 2.27293 2.77467 2.92353 3.03935 3.17963 3.28006 3.62280 3.79676 3.92679 4.06055 4.09122 4.10502 4.20481 4.30423 4.33350 4.44003 4.49217 4.54143 4.60170 4.65775 4.68887 4.71108 4.72806 4.85097 4.93151 4.98135 5.04989 5.16599 5.25464 5.28402 5.35407 5.39300 5.65267 5.65776 5.73384 5.76756 5.91407 6.25173 6.69841 6.83647 6.84345 7.40278 7.58777 8.61255 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017825 B = 0.002966 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.473535 B = 9439.635215 C =10402.976605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.211 3.789 3 C 0.069 3.931 4 O -0.573 6.573 5 N -0.704 5.704 6 C 0.517 3.483 7 O -0.569 6.569 8 C -0.092 4.092 9 C -0.024 4.024 10 C -0.171 4.171 11 C -0.078 4.078 12 C -0.241 4.241 13 C 0.120 3.880 14 O -0.247 6.247 15 C -0.400 4.400 16 H 0.079 0.921 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.971 3.029 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.180 4.180 24 C -0.152 4.152 25 C -0.180 4.180 26 C -0.165 4.165 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.390 0.610 33 H 0.414 0.586 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.285 0.715 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.514 -5.009 -26.064 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.125 3.875 3 C -0.010 4.010 4 O -0.380 6.380 5 N -0.357 5.357 6 C 0.305 3.695 7 O -0.447 6.447 8 C -0.131 4.131 9 C -0.025 4.025 10 C -0.189 4.189 11 C -0.096 4.096 12 C -0.261 4.261 13 C 0.071 3.929 14 O -0.155 6.155 15 C -0.476 4.476 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.793 3.207 20 H -0.186 1.186 21 H -0.191 1.191 22 H -0.191 1.191 23 C -0.199 4.199 24 C -0.170 4.170 25 C -0.216 4.216 26 C -0.203 4.203 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.239 0.761 33 H 0.251 0.749 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.157 0.843 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.603 -5.104 -25.905 30.172 hybrid contribution -0.546 0.486 0.648 0.977 sum 14.056 -4.618 -25.257 29.272 Atomic orbital electron populations 1.22262 0.94205 1.03028 1.02844 1.19756 0.93048 0.90510 0.84203 1.22522 0.81673 0.96602 1.00162 1.86380 1.18959 1.34919 1.97706 1.45835 1.52654 1.33138 1.04028 1.20786 0.79598 0.83976 0.85145 1.90697 1.38323 1.28566 1.87146 1.20699 1.04190 1.00540 0.87691 1.19190 0.92580 0.95669 0.95031 1.20978 1.01903 0.98344 0.97682 1.21096 0.93922 0.98757 0.95778 1.21312 0.98757 1.02125 1.03861 1.19581 0.86022 0.94119 0.93182 1.83501 1.33505 1.52333 1.46128 1.20716 1.02742 1.15706 1.08423 0.90315 1.25287 0.97057 1.00576 0.95971 1.69728 1.20667 1.41158 1.25017 0.85212 0.77465 0.78576 0.79413 1.18624 1.19103 1.19110 1.20249 0.98783 1.04577 0.96302 1.22197 1.00476 1.04508 0.89835 1.23284 0.98276 0.97330 1.02739 1.22989 1.03565 0.97432 0.96282 0.90998 0.93033 0.90414 0.92115 0.94385 0.76097 0.74890 0.85772 0.84544 0.83723 0.84285 0.87547 0.90562 0.86111 0.86550 0.87529 0.88226 0.88857 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 6.96 71.98 0.50 -2.87 16 2 C 0.21 3.79 0.70 3.60 0.00 3.80 16 3 C 0.07 1.36 5.56 71.98 0.40 1.76 16 4 O -0.57 -9.90 13.15 -148.98 -1.96 -11.86 16 5 N -0.70 -12.70 4.97 -422.94 -2.10 -14.81 16 6 C 0.52 12.99 7.24 87.65 0.63 13.63 16 7 O -0.57 -19.87 12.24 -3.03 -0.04 -19.91 16 8 C -0.09 -1.98 5.83 29.10 0.17 -1.81 16 9 C -0.02 -0.79 4.37 -19.88 -0.09 -0.88 16 10 C -0.17 -5.52 9.70 22.30 0.22 -5.30 16 11 C -0.08 -2.89 10.04 22.25 0.22 -2.67 16 12 C -0.24 -11.40 9.17 22.39 0.21 -11.19 16 13 C 0.12 6.00 6.65 22.58 0.15 6.15 16 14 O -0.25 -14.17 8.59 -22.67 -0.19 -14.36 16 15 C -0.40 -24.66 9.95 67.92 0.68 -23.98 16 16 H 0.08 5.09 5.44 -2.91 -0.02 5.08 16 17 C 0.01 0.55 5.49 84.83 0.47 1.01 16 18 N -0.92 -56.97 13.96 21.61 0.30 -56.67 16 19 Si 0.97 47.12 28.62 68.60 1.96 49.08 16 20 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 23 C -0.18 -7.43 9.65 22.39 0.22 -7.22 16 24 C -0.15 -1.97 4.97 -10.80 -0.05 -2.02 16 25 C -0.18 -1.96 9.52 30.59 0.29 -1.67 16 26 C -0.17 -1.81 9.38 30.59 0.29 -1.53 16 27 H 0.07 1.36 7.14 -2.39 -0.02 1.34 16 28 H 0.05 1.46 6.08 -2.39 -0.01 1.44 16 29 H 0.08 1.30 7.14 -2.38 -0.02 1.28 16 30 H 0.06 0.99 7.09 -2.39 -0.02 0.98 16 31 H 0.04 1.01 6.25 -2.39 -0.01 0.99 16 32 H 0.39 4.01 9.12 -74.06 -0.68 3.34 16 33 H 0.41 4.93 8.42 -92.70 -0.78 4.15 16 34 H 0.12 2.10 8.08 -2.39 -0.02 2.08 16 35 H 0.14 1.98 8.08 -2.38 -0.02 1.96 16 36 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.11 5.48 5.64 -2.91 -0.02 5.46 16 39 H 0.28 16.04 8.31 -92.71 -0.77 15.26 16 40 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 41 H 0.12 1.40 8.06 -2.39 -0.02 1.38 16 42 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.10 1.18 5.83 -2.39 -0.01 1.16 16 44 H 0.09 1.04 7.07 -2.39 -0.02 1.03 16 45 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -78.95 366.24 1.85 -77.09 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.42 Total: 26.23 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 4.30 Total: -34.79 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -1.80 Total: -71.48 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -2.19 Total: -46.13 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.96 Total: 49.08 kcal Total: -78.95 1.85 -77.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761940671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.703 kcal (2) G-P(sol) polarization free energy of solvation -78.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds