Wall clock time and date at job start Tue Mar 31 2020 13:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.87085 * 2 1 4 4 O 1.43753 * 109.87758 * 238.84389 * 2 1 3 5 5 C 1.44382 * 106.97121 * 214.05891 * 4 2 1 6 6 C 1.55346 * 103.50238 * 40.09403 * 5 4 2 7 7 C 1.54097 * 109.88278 * 121.01147 * 2 1 3 8 8 C 1.53001 * 110.48639 * 2.64714 * 7 2 1 9 9 N 1.46499 * 110.49070 * 240.13160 * 7 2 1 10 10 C 1.34778 * 120.00154 * 181.56944 * 9 7 2 11 11 O 1.21279 * 119.99859 * 0.27170 * 10 9 7 12 12 C 1.50697 * 119.99970 * 180.27504 * 10 9 7 13 13 C 1.50703 * 109.47070 * 179.97438 * 12 10 9 14 14 C 1.38303 * 119.93211 * 269.72897 * 13 12 10 15 15 C 1.38097 * 120.06606 * 179.72494 * 14 13 12 16 16 C 1.38881 * 119.93086 * 0.57211 * 15 14 13 17 17 O 1.35749 * 120.06573 * 179.68800 * 16 15 14 18 18 C 1.34833 * 117.00010 * 174.48355 * 17 16 15 19 19 H 1.08005 * 119.99826 * 5.05378 * 18 17 16 20 20 C 1.38651 * 120.00211 * 185.05159 * 18 17 16 21 21 N 1.31557 * 120.00061 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99905 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47158 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47045 * 119.99916 * 22 20 18 25 25 H 1.48502 * 109.46749 * 239.99905 * 22 20 18 26 26 C 1.38877 * 119.86118 * 359.69774 * 16 15 14 27 27 C 1.38099 * 119.93290 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.47022 * 298.98699 * 1 2 3 29 29 H 1.08998 * 109.47772 * 58.98945 * 1 2 3 30 30 H 1.09004 * 109.47141 * 178.98648 * 1 2 3 31 31 H 1.09006 * 110.60988 * 158.56298 * 5 4 2 32 32 H 1.08995 * 110.61901 * 281.55459 * 5 4 2 33 33 H 1.08999 * 111.00493 * 204.78405 * 6 5 4 34 34 H 1.09007 * 110.95662 * 81.07720 * 6 5 4 35 35 H 1.09007 * 109.46802 * 298.15465 * 8 7 2 36 36 H 1.09004 * 109.47165 * 58.15460 * 8 7 2 37 37 H 1.09003 * 109.47445 * 178.15676 * 8 7 2 38 38 H 0.97005 * 119.99707 * 1.83995 * 9 7 2 39 39 H 1.08998 * 109.47273 * 299.99794 * 12 10 9 40 40 H 1.09003 * 109.47424 * 59.99661 * 12 10 9 41 41 H 1.08003 * 119.96266 * 359.97351 * 14 13 12 42 42 H 1.07998 * 120.03295 * 180.27118 * 15 14 13 43 43 H 0.96993 * 119.99778 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.03439 * 179.97438 * 26 16 15 45 45 H 1.08002 * 119.96546 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0187 -0.6994 -1.1569 5 6 3.2379 -1.3651 -0.7630 6 6 2.9188 -1.8926 0.6628 7 6 2.0540 -0.7466 1.2420 8 6 0.8898 -1.3136 2.0568 9 7 2.8711 0.1446 2.0692 10 6 3.4535 -0.3229 3.1912 11 8 3.3051 -1.4827 3.5133 12 6 4.2889 0.5954 4.0454 13 6 4.8210 -0.1673 5.2312 14 6 4.0930 -0.2118 6.4063 15 6 4.5753 -0.9147 7.4928 16 6 5.7983 -1.5673 7.4084 17 8 6.2780 -2.2537 8.4769 18 6 7.4130 -2.9579 8.2927 19 1 7.9421 -2.8933 7.3533 20 6 7.9009 -3.7648 9.3091 21 7 7.2568 -3.8430 10.4535 22 14 9.4738 -4.7398 9.0541 23 1 10.0019 -4.4797 7.6908 24 1 10.4817 -4.3262 10.0631 25 1 9.1877 -6.1891 9.2054 26 6 6.5295 -1.5160 6.2289 27 6 6.0392 -0.8163 5.1440 28 1 -0.3633 0.4980 0.8989 29 1 -0.3634 0.5294 -0.8807 30 1 -0.3634 -1.0275 -0.0182 31 1 3.4584 -2.1926 -1.4375 32 1 4.0684 -0.6598 -0.7349 33 1 3.8314 -2.0234 1.2444 34 1 2.3520 -2.8226 0.6167 35 1 0.2600 -0.4962 2.4081 36 1 0.3002 -1.9833 1.4306 37 1 1.2796 -1.8654 2.9122 38 1 2.9898 1.0722 1.8115 39 1 5.1218 0.9809 3.4574 40 1 3.6750 1.4261 4.3938 41 1 3.1445 0.3003 6.4729 42 1 4.0043 -0.9527 8.4087 43 1 7.5980 -4.4078 11.1644 44 1 7.4811 -2.0222 6.1604 45 1 6.6072 -0.7764 4.2263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784241883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:46 Heat of formation + Delta-G solvation = -105.428957 kcal Electronic energy + Delta-G solvation = -26593.774085 eV Core-core repulsion = 22769.138049 eV Total energy + Delta-G solvation = -3824.636036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76940 -40.79506 -39.79207 -38.17296 -35.92622 -34.40499 -33.51208 -32.71632 -31.89282 -31.73901 -28.58039 -28.15219 -27.06530 -25.79568 -23.68199 -23.61742 -22.54290 -21.12513 -20.49415 -19.84078 -18.88277 -18.41215 -17.54099 -16.87029 -16.61678 -16.48064 -16.29797 -16.02800 -15.77472 -15.54127 -15.43344 -15.04248 -14.84119 -14.62462 -14.40252 -14.15312 -13.78087 -13.71967 -13.57349 -13.29107 -12.98028 -12.79598 -12.62621 -12.60975 -12.43611 -12.26557 -12.21570 -12.18726 -12.10227 -11.95043 -11.71898 -11.17402 -10.83499 -10.69836 -10.58481 -10.06848 -9.75437 -8.88925 -8.47981 -6.15989 0.62370 0.68314 1.33193 1.41892 1.51968 1.77431 2.16379 2.18993 2.81527 2.87019 3.18033 3.43019 3.53240 3.70376 3.80389 3.88717 4.05986 4.07161 4.14531 4.18808 4.21477 4.37414 4.50296 4.56972 4.61323 4.64769 4.72821 4.74208 4.74768 4.81657 4.85236 4.94505 5.02799 5.07782 5.10397 5.14885 5.17969 5.31446 5.41915 5.55560 5.57680 5.72437 5.79135 5.90816 6.02929 6.24284 6.66784 6.96840 7.41511 7.78665 8.75848 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.002488 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.510127 B =11249.897797 C =11738.534989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.077 3.923 3 H 0.093 0.907 4 O -0.386 6.386 5 C 0.049 3.951 6 C -0.158 4.158 7 C 0.147 3.853 8 C -0.156 4.156 9 N -0.711 5.711 10 C 0.513 3.487 11 O -0.565 6.565 12 C -0.079 4.079 13 C -0.142 4.142 14 C -0.057 4.057 15 C -0.207 4.207 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.269 1.269 26 C -0.244 4.244 27 C -0.060 4.060 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.416 0.584 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.146 0.854 42 H 0.110 0.890 43 H 0.273 0.727 44 H 0.115 0.885 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 12.600 -24.241 29.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.019 3.981 3 H 0.110 0.890 4 O -0.306 6.306 5 C -0.027 4.027 6 C -0.197 4.197 7 C 0.060 3.940 8 C -0.214 4.214 9 N -0.366 5.366 10 C 0.301 3.699 11 O -0.442 6.442 12 C -0.118 4.118 13 C -0.143 4.143 14 C -0.075 4.075 15 C -0.226 4.226 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.175 1.175 24 H -0.190 1.190 25 H -0.194 1.194 26 C -0.263 4.263 27 C -0.078 4.078 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.255 0.745 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.164 0.836 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.686 11.664 -23.811 28.587 hybrid contribution 0.937 -0.614 0.721 1.332 sum -9.748 11.050 -23.090 27.391 Atomic orbital electron populations 1.22056 0.92079 1.03271 1.03466 1.23020 0.96430 0.95860 0.82778 0.88977 1.88905 1.40375 1.67975 1.33312 1.23690 0.87389 0.96949 0.94659 1.23502 1.00776 0.98696 0.96741 1.21590 0.90979 0.90345 0.91097 1.22239 0.96933 1.01797 1.00390 1.46013 1.51473 1.14635 1.24486 1.21085 0.79319 0.88557 0.80909 1.90743 1.61498 1.20205 1.71795 1.20543 1.00826 0.97167 0.93260 1.19244 0.95719 1.03948 0.95434 1.20868 0.98896 0.96372 0.91347 1.20441 0.95438 1.05434 1.01282 1.19941 0.93755 0.92382 0.87812 1.83937 1.40675 1.56880 1.32657 1.21849 0.99847 1.24389 1.02784 0.88307 1.26611 1.03476 0.97968 0.94140 1.70192 1.41295 1.39317 1.05243 0.84521 0.74973 0.77210 0.79421 1.17549 1.19022 1.19420 1.21217 1.02478 1.07887 0.94752 1.20917 0.95748 0.94355 0.96770 0.89455 0.91214 0.91955 0.87938 0.90976 0.91152 0.90619 0.90676 0.90779 0.93322 0.74536 0.85530 0.85181 0.83584 0.87145 0.91844 0.86677 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.40 71.98 0.60 -0.98 16 2 C 0.08 0.98 3.86 30.96 0.12 1.10 16 3 H 0.09 0.79 7.48 -2.39 -0.02 0.78 16 4 O -0.39 -6.58 11.19 -148.98 -1.67 -8.25 16 5 C 0.05 0.75 7.73 72.79 0.56 1.31 16 6 C -0.16 -3.06 5.95 32.02 0.19 -2.87 16 7 C 0.15 2.38 0.95 4.59 0.00 2.38 16 8 C -0.16 -2.87 7.19 71.98 0.52 -2.35 16 9 N -0.71 -10.07 5.16 -418.46 -2.16 -12.23 16 10 C 0.51 11.21 7.03 87.66 0.62 11.83 16 11 O -0.56 -18.61 12.99 -3.03 -0.04 -18.65 16 12 C -0.08 -1.44 5.83 29.10 0.17 -1.27 16 13 C -0.14 -4.39 4.38 -19.83 -0.09 -4.48 16 14 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 15 C -0.21 -9.28 9.99 22.39 0.22 -9.05 16 16 C 0.11 5.83 6.65 22.58 0.15 5.98 16 17 O -0.23 -14.73 9.76 -22.76 -0.22 -14.96 16 18 C -0.41 -24.97 9.49 67.92 0.64 -24.32 16 19 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 20 C -0.02 -1.46 5.49 84.83 0.47 -0.99 16 21 N -0.92 -58.18 13.67 21.61 0.30 -57.88 16 22 Si 1.02 44.23 29.55 68.60 2.03 46.26 16 23 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 C -0.24 -11.20 9.17 22.39 0.21 -10.99 16 27 C -0.06 -2.13 9.69 22.25 0.22 -1.92 16 28 H 0.09 0.68 6.87 -2.39 -0.02 0.67 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.75 6.67 -2.38 -0.02 0.74 16 31 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.68 6.81 -2.39 -0.02 1.66 16 34 H 0.08 1.57 7.87 -2.38 -0.02 1.55 16 35 H 0.07 1.12 6.84 -2.38 -0.02 1.10 16 36 H 0.07 1.23 6.71 -2.39 -0.02 1.22 16 37 H 0.05 1.27 6.18 -2.39 -0.01 1.26 16 38 H 0.42 2.79 8.11 -92.70 -0.75 2.04 16 39 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 40 H 0.13 1.53 8.08 -2.39 -0.02 1.51 16 41 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 44 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 45 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -82.17 362.57 3.32 -78.85 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.27 Total: 25.25 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 4.82 Total: -38.39 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -1.86 Total: -70.11 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.93 Total: -41.85 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -82.17 3.32 -78.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784241883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.580 kcal (2) G-P(sol) polarization free energy of solvation -82.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds