Wall clock time and date at job start Tue Mar 31 2020 13:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.86528 * 2 1 4 4 O 1.43741 * 109.87718 * 238.84465 * 2 1 3 5 5 C 1.44380 * 106.97263 * 267.08603 * 4 2 1 6 6 C 1.55350 * 103.50242 * 319.90870 * 5 4 2 7 7 C 1.54097 * 109.88110 * 121.01056 * 2 1 3 8 8 C 1.53002 * 110.48619 * 236.20480 * 7 2 1 9 9 N 1.46506 * 110.48565 * 358.71730 * 7 2 1 10 10 C 1.34775 * 119.99748 * 178.15770 * 9 7 2 11 11 O 1.21288 * 120.00138 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00030 * 180.02562 * 10 9 7 13 13 C 1.50703 * 109.46963 * 179.97438 * 12 10 9 14 14 C 1.38298 * 119.93042 * 90.00328 * 13 12 10 15 15 C 1.38096 * 120.06798 * 179.97438 * 14 13 12 16 16 C 1.38878 * 119.93166 * 359.97438 * 15 14 13 17 17 O 1.35751 * 120.06632 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00369 * 354.47748 * 17 16 15 19 19 H 1.07998 * 120.00313 * 5.06007 * 18 17 16 20 20 C 1.38655 * 120.00287 * 185.06530 * 18 17 16 21 21 N 1.31555 * 119.99917 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00297 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47008 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47461 * 119.99469 * 22 20 18 25 25 H 1.48499 * 109.46853 * 239.99813 * 22 20 18 26 26 C 1.38873 * 119.86379 * 359.97438 * 16 15 14 27 27 C 1.38098 * 119.93065 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.46818 * 298.98922 * 1 2 3 29 29 H 1.08996 * 109.47387 * 58.99511 * 1 2 3 30 30 H 1.09004 * 109.46851 * 178.98859 * 1 2 3 31 31 H 1.08997 * 110.62324 * 78.44364 * 5 4 2 32 32 H 1.09000 * 110.61994 * 201.28260 * 5 4 2 33 33 H 1.08999 * 110.95801 * 278.91821 * 6 5 4 34 34 H 1.09003 * 111.00487 * 155.21142 * 6 5 4 35 35 H 1.08999 * 109.46863 * 181.84417 * 8 7 2 36 36 H 1.08993 * 109.46843 * 301.84548 * 8 7 2 37 37 H 1.09001 * 109.47117 * 61.84454 * 8 7 2 38 38 H 0.96995 * 120.00015 * 358.15590 * 9 7 2 39 39 H 1.09004 * 109.47078 * 60.00186 * 12 10 9 40 40 H 1.08995 * 109.46873 * 299.99779 * 12 10 9 41 41 H 1.08001 * 119.96195 * 0.02562 * 14 13 12 42 42 H 1.08003 * 120.03408 * 179.72170 * 15 14 13 43 43 H 0.96997 * 120.00240 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.03394 * 180.02562 * 26 16 15 45 45 H 1.08002 * 119.96899 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6994 -1.1568 5 6 2.2281 -2.0723 -0.7621 6 6 2.8347 -1.9515 0.6630 7 6 2.0541 -0.7466 1.2420 8 6 2.9859 0.1545 2.0549 9 7 0.9382 -1.2091 2.0710 10 6 1.1796 -1.9199 3.1903 11 8 2.3207 -2.1770 3.5111 12 6 0.0318 -2.3961 4.0428 13 6 0.5679 -3.1614 5.2252 14 6 0.8634 -2.4963 6.4012 15 6 1.3543 -3.1949 7.4866 16 6 1.5508 -4.5667 7.3964 17 8 2.0337 -5.2561 8.4615 18 6 2.4102 -4.5357 9.5372 19 1 2.2453 -3.4686 9.5572 20 6 3.0093 -5.1649 10.6179 21 7 3.2099 -6.4648 10.5938 22 14 3.5303 -4.1670 12.1086 23 1 3.1959 -2.7369 11.8884 24 1 2.8149 -4.6635 13.3114 25 1 4.9948 -4.3070 12.3106 26 6 1.2522 -5.2319 6.2145 27 6 0.7615 -4.5277 5.1326 28 1 -0.3633 0.4980 0.8989 29 1 -0.3634 0.5293 -0.8808 30 1 -0.3633 -1.0276 -0.0181 31 1 1.2815 -2.6118 -0.7322 32 1 2.9274 -2.5638 -1.4384 33 1 3.9023 -1.7368 0.6154 34 1 2.6463 -2.8533 1.2456 35 1 3.3722 -0.3997 2.9103 36 1 3.8159 0.4791 1.4274 37 1 2.4334 1.0260 2.4061 38 1 0.0257 -1.0037 1.8143 39 1 -0.6141 -3.0460 3.4524 40 1 -0.5403 -1.5375 4.3944 41 1 0.7091 -1.4297 6.4710 42 1 1.5891 -2.6743 8.4033 43 1 3.6286 -6.9051 11.3499 44 1 1.4035 -6.2987 6.1415 45 1 0.5287 -5.0444 4.2132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784241884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:50 Heat of formation + Delta-G solvation = -77.563683 kcal Electronic energy + Delta-G solvation = -26695.510804 eV Core-core repulsion = 22872.083097 eV Total energy + Delta-G solvation = -3823.427707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02777 -39.28218 -38.54427 -36.50933 -35.06309 -32.57492 -32.07984 -31.62514 -30.64420 -30.11615 -28.94754 -26.60070 -25.11761 -24.74669 -22.40696 -21.94802 -21.62184 -20.25325 -19.51877 -17.95363 -17.67186 -16.94034 -16.84788 -16.40242 -15.29022 -14.98101 -14.83008 -14.53307 -14.37272 -14.24199 -13.87321 -13.72147 -13.51775 -13.44543 -13.31554 -13.00179 -12.79203 -12.67048 -12.38907 -12.28645 -11.95414 -11.84154 -11.53585 -11.48515 -11.31890 -11.24573 -10.90435 -10.82374 -10.73341 -10.57681 -10.39984 -10.01330 -9.55601 -9.29423 -9.17315 -8.79775 -8.12200 -7.13371 -6.42176 -4.00632 2.27405 2.28774 2.75696 3.08553 3.15106 3.17198 3.21265 3.53218 3.99239 4.08938 4.40495 4.49954 4.56860 4.71579 4.82420 4.91213 4.98493 5.07006 5.11125 5.19224 5.27475 5.32594 5.34652 5.37606 5.48332 5.57729 5.59119 5.66830 5.69486 5.73622 5.75336 5.86777 5.87361 6.13859 6.24574 6.32760 6.44740 6.59061 6.73186 6.94373 7.08622 7.26882 7.39962 7.44318 7.48744 7.87010 8.03333 8.33021 9.03761 9.74577 10.76127 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.002459 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.446348 B =11382.883766 C =11554.014915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 H 0.103 0.897 4 O -0.369 6.369 5 C 0.044 3.956 6 C -0.155 4.155 7 C 0.149 3.851 8 C -0.159 4.159 9 N -0.735 5.735 10 C 0.509 3.491 11 O -0.513 6.513 12 C -0.081 4.081 13 C -0.169 4.169 14 C -0.056 4.056 15 C -0.232 4.232 16 C 0.157 3.843 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.191 4.191 27 C -0.059 4.059 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.116 0.884 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 12.854 -20.400 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.015 3.985 3 H 0.121 0.879 4 O -0.288 6.288 5 C -0.032 4.032 6 C -0.193 4.193 7 C 0.062 3.938 8 C -0.217 4.217 9 N -0.393 5.393 10 C 0.296 3.704 11 O -0.386 6.386 12 C -0.121 4.121 13 C -0.170 4.170 14 C -0.074 4.074 15 C -0.252 4.252 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.211 4.211 27 C -0.078 4.078 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.238 0.762 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.079 0.921 44 H 0.134 0.866 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.741 12.330 -20.156 24.316 hybrid contribution -0.217 0.556 0.827 1.020 sum -5.958 12.886 -19.329 23.982 Atomic orbital electron populations 1.22298 0.95770 1.02867 1.02992 1.23000 0.94116 0.97055 0.84356 0.87888 1.88928 1.86004 1.21174 1.32682 1.23676 0.99982 0.83914 0.95675 1.23540 1.00684 0.99409 0.95710 1.21516 0.87552 0.94138 0.90573 1.22182 0.98775 0.98978 1.01749 1.46566 1.09406 1.57535 1.25810 1.21060 0.91641 0.77308 0.80400 1.90717 1.22967 1.54626 1.70333 1.20422 0.95723 1.00628 0.95289 1.18609 1.10618 0.93565 0.94239 1.20493 0.96695 0.97836 0.92417 1.21104 1.09290 0.94525 1.00242 1.19375 0.91629 0.90555 0.88122 1.83975 1.69216 1.34497 1.20536 1.21373 1.39846 0.92663 0.92758 0.89048 1.25287 0.96407 0.96149 0.98728 1.70048 1.40233 1.08329 1.31252 0.85650 0.78572 0.79199 0.80022 1.19111 1.20168 1.20154 1.20148 1.09058 0.99810 0.92062 1.20383 0.97577 0.93144 0.96679 0.90938 0.91046 0.91666 0.92221 0.88762 0.89623 0.88983 0.89540 0.91655 0.92455 0.76157 0.89121 0.89112 0.87902 0.85623 0.92112 0.86594 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 8.10 37.16 0.30 -0.77 16 2 C 0.07 0.58 3.76 -26.15 -0.10 0.48 16 3 H 0.10 0.74 7.69 -51.93 -0.40 0.34 16 4 O -0.37 -3.60 11.19 -35.23 -0.39 -4.00 16 5 C 0.04 0.38 7.67 38.40 0.29 0.68 16 6 C -0.15 -1.58 5.94 -24.53 -0.15 -1.73 16 7 C 0.15 1.41 0.93 -130.29 -0.12 1.29 16 8 C -0.16 -1.63 8.18 37.16 0.30 -1.33 16 9 N -0.73 -6.81 4.85 -46.19 -0.22 -7.03 16 10 C 0.51 6.55 7.03 -10.99 -0.08 6.47 16 11 O -0.51 -8.87 12.99 5.55 0.07 -8.80 16 12 C -0.08 -0.97 5.83 -29.03 -0.17 -1.14 16 13 C -0.17 -2.89 4.38 -104.57 -0.46 -3.35 16 14 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 15 C -0.23 -5.21 9.17 -39.40 -0.36 -5.57 16 16 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 17 O -0.18 -5.22 9.76 0.06 0.00 -5.22 16 18 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 22 Si 0.94 20.88 29.55 -169.99 -5.02 15.85 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 26 C -0.19 -4.18 9.99 -39.40 -0.39 -4.58 16 27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 28 H 0.07 0.33 7.25 -51.93 -0.38 -0.04 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.38 7.43 -51.93 -0.39 -0.01 16 31 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.88 7.87 -51.93 -0.41 0.47 16 34 H 0.09 1.12 6.79 -51.93 -0.35 0.77 16 35 H 0.09 1.17 6.19 -51.93 -0.32 0.85 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.40 2.64 5.30 -40.82 -0.22 2.43 16 39 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 40 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.13 2.82 5.64 -52.48 -0.30 2.53 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -33.89 364.01 -7.46 -41.35 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.38 Total: 5.98 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.76 Total: -18.66 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.53 Total: -31.99 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.32 Total: -18.02 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.89 -7.46 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784241884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.211 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds