Wall clock time and date at job start Tue Mar 31 2020 13:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 109.86528 * 2 1 4 4 O 1.43741 * 109.87718 * 238.84465 * 2 1 3 5 5 C 1.44380 * 106.97263 * 267.08603 * 4 2 1 6 6 C 1.55350 * 103.50242 * 319.90870 * 5 4 2 7 7 C 1.54097 * 109.88110 * 121.01056 * 2 1 3 8 8 C 1.53002 * 110.48619 * 236.20480 * 7 2 1 9 9 N 1.46506 * 110.48565 * 358.71730 * 7 2 1 10 10 C 1.34775 * 119.99748 * 178.15770 * 9 7 2 11 11 O 1.21288 * 120.00138 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00030 * 180.02562 * 10 9 7 13 13 C 1.50703 * 109.46963 * 179.97438 * 12 10 9 14 14 C 1.38298 * 119.93042 * 90.00328 * 13 12 10 15 15 C 1.38096 * 120.06798 * 179.97438 * 14 13 12 16 16 C 1.38878 * 119.93166 * 359.97438 * 15 14 13 17 17 O 1.35751 * 120.06632 * 179.97438 * 16 15 14 18 18 C 1.34825 * 117.00369 * 354.47748 * 17 16 15 19 19 H 1.07998 * 120.00313 * 5.06007 * 18 17 16 20 20 C 1.38655 * 120.00287 * 185.06530 * 18 17 16 21 21 N 1.31555 * 119.99917 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00297 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47008 * 359.97438 * 22 20 18 24 24 H 1.48491 * 109.47461 * 119.99469 * 22 20 18 25 25 H 1.48499 * 109.46853 * 239.99813 * 22 20 18 26 26 C 1.38873 * 119.86379 * 359.97438 * 16 15 14 27 27 C 1.38098 * 119.93065 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.46818 * 298.98922 * 1 2 3 29 29 H 1.08996 * 109.47387 * 58.99511 * 1 2 3 30 30 H 1.09004 * 109.46851 * 178.98859 * 1 2 3 31 31 H 1.08997 * 110.62324 * 78.44364 * 5 4 2 32 32 H 1.09000 * 110.61994 * 201.28260 * 5 4 2 33 33 H 1.08999 * 110.95801 * 278.91821 * 6 5 4 34 34 H 1.09003 * 111.00487 * 155.21142 * 6 5 4 35 35 H 1.08999 * 109.46863 * 181.84417 * 8 7 2 36 36 H 1.08993 * 109.46843 * 301.84548 * 8 7 2 37 37 H 1.09001 * 109.47117 * 61.84454 * 8 7 2 38 38 H 0.96995 * 120.00015 * 358.15590 * 9 7 2 39 39 H 1.09004 * 109.47078 * 60.00186 * 12 10 9 40 40 H 1.08995 * 109.46873 * 299.99779 * 12 10 9 41 41 H 1.08001 * 119.96195 * 0.02562 * 14 13 12 42 42 H 1.08003 * 120.03408 * 179.72170 * 15 14 13 43 43 H 0.96997 * 120.00240 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.03394 * 180.02562 * 26 16 15 45 45 H 1.08002 * 119.96899 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6994 -1.1568 5 6 2.2281 -2.0723 -0.7621 6 6 2.8347 -1.9515 0.6630 7 6 2.0541 -0.7466 1.2420 8 6 2.9859 0.1545 2.0549 9 7 0.9382 -1.2091 2.0710 10 6 1.1796 -1.9199 3.1903 11 8 2.3207 -2.1770 3.5111 12 6 0.0318 -2.3961 4.0428 13 6 0.5679 -3.1614 5.2252 14 6 0.8634 -2.4963 6.4012 15 6 1.3543 -3.1949 7.4866 16 6 1.5508 -4.5667 7.3964 17 8 2.0337 -5.2561 8.4615 18 6 2.4102 -4.5357 9.5372 19 1 2.2453 -3.4686 9.5572 20 6 3.0093 -5.1649 10.6179 21 7 3.2099 -6.4648 10.5938 22 14 3.5303 -4.1670 12.1086 23 1 3.1959 -2.7369 11.8884 24 1 2.8149 -4.6635 13.3114 25 1 4.9948 -4.3070 12.3106 26 6 1.2522 -5.2319 6.2145 27 6 0.7615 -4.5277 5.1326 28 1 -0.3633 0.4980 0.8989 29 1 -0.3634 0.5293 -0.8808 30 1 -0.3633 -1.0276 -0.0181 31 1 1.2815 -2.6118 -0.7322 32 1 2.9274 -2.5638 -1.4384 33 1 3.9023 -1.7368 0.6154 34 1 2.6463 -2.8533 1.2456 35 1 3.3722 -0.3997 2.9103 36 1 3.8159 0.4791 1.4274 37 1 2.4334 1.0260 2.4061 38 1 0.0257 -1.0037 1.8143 39 1 -0.6141 -3.0460 3.4524 40 1 -0.5403 -1.5375 4.3944 41 1 0.7091 -1.4297 6.4710 42 1 1.5891 -2.6743 8.4033 43 1 3.6286 -6.9051 11.3499 44 1 1.4035 -6.2987 6.1415 45 1 0.5287 -5.0444 4.2132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784241884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:49 Heat of formation + Delta-G solvation = -100.953407 kcal Electronic energy + Delta-G solvation = -26696.525059 eV Core-core repulsion = 22872.083097 eV Total energy + Delta-G solvation = -3824.441961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84762 -40.79793 -39.76850 -38.16995 -35.95169 -34.40473 -33.31676 -32.35007 -31.83818 -31.70194 -29.64930 -28.14561 -26.95944 -25.44033 -23.62805 -23.31617 -22.64779 -21.53244 -20.37395 -19.84290 -18.89424 -18.42455 -17.56261 -17.30941 -16.59111 -16.41089 -16.07073 -15.83907 -15.55051 -15.45009 -15.44813 -14.99718 -14.70457 -14.43800 -14.36643 -14.21321 -14.00558 -13.74031 -13.61870 -13.39686 -12.99319 -12.87805 -12.72240 -12.68977 -12.43565 -12.27528 -12.25521 -12.19721 -12.10142 -12.04318 -11.61961 -11.17228 -10.83689 -10.67031 -10.58338 -10.05276 -9.75375 -8.88871 -8.47880 -6.15877 0.62438 0.68488 1.33348 1.42045 1.52125 1.77915 2.16775 2.21638 2.83778 2.88501 3.18115 3.40770 3.53299 3.73555 3.79141 3.88785 4.06362 4.09462 4.15279 4.19104 4.22674 4.33886 4.50062 4.55182 4.60112 4.61685 4.69129 4.71124 4.73023 4.81637 4.88299 4.93875 5.01403 5.06173 5.10256 5.14979 5.27964 5.29049 5.31548 5.55277 5.57679 5.72549 5.79214 5.89658 6.03032 6.24251 6.65931 6.96951 7.41500 7.78816 8.75969 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.002459 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.446348 B =11382.883766 C =11554.014915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.074 3.926 3 H 0.112 0.888 4 O -0.384 6.384 5 C 0.049 3.951 6 C -0.158 4.158 7 C 0.147 3.853 8 C -0.156 4.156 9 N -0.713 5.713 10 C 0.511 3.489 11 O -0.565 6.565 12 C -0.080 4.080 13 C -0.142 4.142 14 C -0.059 4.059 15 C -0.244 4.244 16 C 0.112 3.888 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.020 2.980 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.269 1.269 26 C -0.207 4.207 27 C -0.057 4.057 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.417 0.583 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.116 0.884 43 H 0.273 0.727 44 H 0.110 0.890 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.958 15.876 -22.879 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.016 3.984 3 H 0.130 0.870 4 O -0.303 6.303 5 C -0.028 4.028 6 C -0.196 4.196 7 C 0.060 3.940 8 C -0.214 4.214 9 N -0.371 5.371 10 C 0.299 3.701 11 O -0.443 6.443 12 C -0.119 4.119 13 C -0.143 4.143 14 C -0.077 4.077 15 C -0.264 4.264 16 C 0.062 3.938 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.175 1.175 24 H -0.190 1.190 25 H -0.194 1.194 26 C -0.226 4.226 27 C -0.075 4.075 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.259 0.741 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.155 0.845 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.128 0.872 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.023 15.401 -22.716 28.593 hybrid contribution 0.351 -0.256 1.213 1.288 sum -7.672 15.144 -21.504 27.397 Atomic orbital electron populations 1.22306 0.93770 1.03498 1.04223 1.23094 0.95674 0.96889 0.82745 0.87017 1.88920 1.86344 1.21594 1.33447 1.23692 1.00587 0.83829 0.94645 1.23495 1.00590 0.98852 0.96710 1.21543 0.87465 0.93852 0.91092 1.22133 0.99458 0.99105 1.00745 1.46336 1.10387 1.55969 1.24456 1.21127 0.90872 0.77135 0.81013 1.90740 1.24960 1.56826 1.71766 1.20552 0.95836 1.02130 0.93394 1.19233 1.06388 0.93399 0.95286 1.20919 0.95535 0.99495 0.91792 1.21221 1.09998 0.93777 1.01358 1.19932 0.93383 0.92064 0.88445 1.83935 1.72167 1.36055 1.22000 1.21850 1.40387 0.93275 0.93367 0.88296 1.26610 0.96124 0.97433 1.02012 1.70192 1.42565 1.10522 1.32790 0.84521 0.78244 0.77970 0.75395 1.17531 1.19022 1.19429 1.20435 1.09665 1.00080 0.92437 1.20862 0.95952 0.94020 0.96665 0.89159 0.90475 0.91272 0.91146 0.87921 0.90518 0.91065 0.92948 0.90911 0.91121 0.74100 0.85308 0.85452 0.84460 0.86659 0.91844 0.87156 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.10 71.98 0.58 -0.73 16 2 C 0.07 0.93 3.76 30.97 0.12 1.05 16 3 H 0.11 1.22 7.69 -2.38 -0.02 1.20 16 4 O -0.38 -6.44 11.19 -148.98 -1.67 -8.11 16 5 C 0.05 0.73 7.67 72.79 0.56 1.29 16 6 C -0.16 -3.02 5.94 32.02 0.19 -2.83 16 7 C 0.15 2.41 0.93 4.59 0.00 2.42 16 8 C -0.16 -2.95 8.18 71.98 0.59 -2.36 16 9 N -0.71 -10.36 4.85 -418.45 -2.03 -12.39 16 10 C 0.51 11.28 7.03 87.66 0.62 11.90 16 11 O -0.57 -18.68 12.99 -3.06 -0.04 -18.72 16 12 C -0.08 -1.48 5.83 29.10 0.17 -1.31 16 13 C -0.14 -4.39 4.38 -19.83 -0.09 -4.48 16 14 C -0.06 -2.12 9.69 22.25 0.22 -1.90 16 15 C -0.24 -11.21 9.17 22.39 0.21 -11.00 16 16 C 0.11 5.86 6.65 22.58 0.15 6.01 16 17 O -0.23 -14.74 9.76 -22.71 -0.22 -14.96 16 18 C -0.41 -24.97 9.49 67.92 0.64 -24.33 16 19 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 20 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 21 N -0.92 -58.20 13.67 21.61 0.30 -57.91 16 22 Si 1.02 44.22 29.55 68.60 2.03 46.25 16 23 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C -0.21 -9.29 9.99 22.39 0.22 -9.07 16 27 C -0.06 -1.98 9.69 22.25 0.22 -1.76 16 28 H 0.09 0.35 7.25 -2.39 -0.02 0.33 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.47 7.43 -2.38 -0.02 0.45 16 31 H 0.07 0.91 8.11 -2.39 -0.02 0.89 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.57 7.87 -2.39 -0.02 1.55 16 34 H 0.07 1.68 6.79 -2.39 -0.02 1.66 16 35 H 0.05 1.39 6.19 -2.39 -0.01 1.37 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.42 3.26 5.30 -92.71 -0.49 2.76 16 39 H 0.13 1.55 8.08 -2.38 -0.02 1.53 16 40 H 0.13 1.58 8.08 -2.39 -0.02 1.56 16 41 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.12 5.40 5.64 -2.91 -0.02 5.38 16 43 H 0.27 15.67 8.31 -92.71 -0.77 14.89 16 44 H 0.11 4.92 8.06 -2.91 -0.02 4.89 16 45 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -81.90 364.01 3.74 -78.16 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.52 Total: 25.77 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 4.86 Total: -38.09 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: -1.73 Total: -70.29 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.93 Total: -41.79 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -81.90 3.74 -78.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784241884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.798 kcal (2) G-P(sol) polarization free energy of solvation -81.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds