Wall clock time and date at job start Tue Mar 31 2020 13:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.99202 * 2 1 4 4 O 1.43746 * 109.87612 * 238.91786 * 2 1 3 5 5 C 1.44385 * 106.97345 * 214.06358 * 4 2 1 6 6 C 1.54988 * 103.49097 * 40.06037 * 5 4 2 7 7 C 1.54101 * 109.87839 * 121.08769 * 2 1 3 8 8 C 1.53003 * 110.48932 * 2.77366 * 7 2 1 9 9 N 1.46500 * 110.48741 * 240.12715 * 7 2 1 10 10 C 1.34775 * 120.00386 * 180.02562 * 9 7 2 11 11 O 1.21281 * 119.99812 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00161 * 179.97438 * 10 9 7 13 13 C 1.50702 * 109.46845 * 179.97438 * 12 10 9 14 14 C 1.38319 * 119.96634 * 90.00450 * 13 12 10 15 15 C 1.38281 * 120.13866 * 179.97438 * 14 13 12 16 16 C 1.38118 * 120.07039 * 359.97438 * 15 14 13 17 17 C 1.38866 * 119.93012 * 359.97438 * 16 15 14 18 18 O 1.35744 * 120.06972 * 180.02562 * 17 16 15 19 19 C 1.34837 * 117.00331 * 354.45984 * 18 17 16 20 20 H 1.08002 * 119.98916 * 5.06044 * 19 18 17 21 21 C 1.38648 * 120.00196 * 185.05394 * 19 18 17 22 22 N 1.31560 * 119.99593 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 119.99998 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47419 * 89.99603 * 23 21 19 25 25 H 1.48505 * 109.47141 * 209.99600 * 23 21 19 26 26 H 1.48500 * 109.47329 * 329.99373 * 23 21 19 27 27 C 1.38079 * 119.96521 * 269.72307 * 13 12 10 28 28 H 1.08994 * 109.47223 * 179.63046 * 1 2 3 29 29 H 1.09001 * 109.46633 * 299.63015 * 1 2 3 30 30 H 1.08999 * 109.47130 * 59.62374 * 1 2 3 31 31 H 1.09002 * 110.61521 * 158.56144 * 5 4 2 32 32 H 1.08999 * 110.61534 * 281.55818 * 5 4 2 33 33 H 1.08998 * 110.90911 * 81.17567 * 6 5 4 34 34 H 1.09003 * 110.90889 * 204.77435 * 6 5 4 35 35 H 1.08996 * 109.46676 * 60.00409 * 8 7 2 36 36 H 1.08996 * 109.46852 * 180.02562 * 8 7 2 37 37 H 1.08997 * 109.47021 * 299.99887 * 8 7 2 38 38 H 0.97010 * 119.99580 * 359.97438 * 9 7 2 39 39 H 1.08993 * 109.46930 * 299.99506 * 12 10 9 40 40 H 1.09002 * 109.47111 * 59.99980 * 12 10 9 41 41 H 1.08001 * 119.93183 * 359.96934 * 14 13 12 42 42 H 1.08001 * 119.96469 * 179.97438 * 15 14 13 43 43 H 1.07997 * 120.03670 * 180.02562 * 16 15 14 44 44 H 0.97003 * 119.99404 * 180.02562 * 22 21 19 45 45 H 1.08004 * 120.03383 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6979 -1.1577 5 6 3.2379 -1.3642 -0.7648 6 6 2.9195 -1.8915 0.6574 7 6 2.0540 -0.7483 1.2411 8 6 0.8899 -1.3191 2.0534 9 7 2.8712 0.1418 2.0694 10 6 3.4279 -0.3188 3.2071 11 8 3.2521 -1.4701 3.5453 12 6 4.2690 0.5967 4.0589 13 6 4.7687 -0.1571 5.2643 14 6 5.9748 -0.8318 5.2061 15 6 6.4369 -1.5242 6.3103 16 6 5.6953 -1.5436 7.4753 17 6 4.4845 -0.8664 7.5372 18 8 3.7536 -0.8831 8.6809 19 6 4.2006 -1.6683 9.6818 20 1 5.1448 -2.1834 9.5832 21 6 3.4484 -1.8143 10.8373 22 7 3.8845 -2.5808 11.8135 23 14 1.8152 -0.9237 11.0072 24 1 0.7246 -1.7858 10.4852 25 1 1.5637 -0.6198 12.4389 26 1 1.8589 0.3426 10.2328 27 6 4.0249 -0.1688 6.4276 28 1 -0.3633 -1.0276 -0.0066 29 1 -0.3632 0.5081 0.8933 30 1 -0.3633 0.5197 -0.8866 31 1 3.4584 -2.1908 -1.4402 32 1 4.0685 -0.6589 -0.7357 33 1 2.3540 -2.8220 0.6097 34 1 3.8332 -2.0226 1.2373 35 1 0.3214 -2.0136 1.4349 36 1 1.2786 -1.8437 2.9262 37 1 0.2403 -0.5062 2.3780 38 1 3.0121 1.0626 1.7986 39 1 5.1177 0.9562 3.4772 40 1 3.6667 1.4447 4.3850 41 1 6.5567 -0.8179 4.2964 42 1 7.3788 -2.0504 6.2616 43 1 6.0569 -2.0842 8.3374 44 1 3.3580 -2.6832 12.6218 45 1 3.0852 0.3617 6.4737 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784253289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:58 Heat of formation + Delta-G solvation = -79.019416 kcal Electronic energy + Delta-G solvation = -26803.000201 eV Core-core repulsion = 22979.509369 eV Total energy + Delta-G solvation = -3823.490832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.98392 -39.42435 -38.67638 -36.65621 -35.08624 -32.78135 -32.37076 -32.08300 -31.19874 -29.41478 -27.84359 -27.13923 -25.32301 -25.02156 -22.91214 -21.84703 -21.22682 -20.11828 -19.69652 -17.84946 -17.61826 -16.97554 -16.70128 -16.17218 -15.73358 -15.40462 -15.13570 -14.82155 -14.58326 -14.20871 -13.97260 -13.83472 -13.68608 -13.43508 -13.03181 -12.99336 -12.65217 -12.58337 -12.41512 -12.19000 -11.93048 -11.86760 -11.73298 -11.44928 -11.29172 -11.24519 -11.01869 -10.82975 -10.74726 -10.73827 -10.14063 -10.04861 -9.63495 -9.36386 -9.24227 -8.84491 -8.12978 -7.33559 -6.38378 -4.05088 2.02045 2.30596 2.66929 3.00218 3.23640 3.27961 3.41727 3.49105 4.11148 4.26322 4.36784 4.47093 4.50220 4.70255 4.73505 4.85991 4.87722 4.98403 5.10722 5.14777 5.20457 5.30354 5.32764 5.40028 5.46163 5.53881 5.57441 5.60971 5.69784 5.71706 5.78374 5.83970 5.85245 6.13732 6.18398 6.27105 6.32231 6.54564 6.57473 6.80687 7.11616 7.22932 7.33363 7.37082 7.63240 7.83636 8.07337 8.23874 8.97220 9.60065 10.69553 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019081 B = 0.002890 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.090007 B = 9686.223115 C =10568.814894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.075 3.925 3 H 0.071 0.929 4 O -0.371 6.371 5 C 0.045 3.955 6 C -0.156 4.156 7 C 0.148 3.852 8 C -0.162 4.162 9 N -0.730 5.730 10 C 0.515 3.485 11 O -0.510 6.510 12 C -0.094 4.094 13 C -0.034 4.034 14 C -0.188 4.188 15 C -0.076 4.076 16 C -0.218 4.218 17 C 0.161 3.839 18 O -0.219 6.219 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.063 3.937 22 N -0.881 5.881 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.174 4.174 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.398 0.602 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.279 0.721 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 7.514 -24.226 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 H 0.089 0.911 4 O -0.290 6.290 5 C -0.031 4.031 6 C -0.194 4.194 7 C 0.062 3.938 8 C -0.219 4.219 9 N -0.385 5.385 10 C 0.302 3.698 11 O -0.383 6.383 12 C -0.134 4.134 13 C -0.035 4.035 14 C -0.207 4.207 15 C -0.094 4.094 16 C -0.237 4.237 17 C 0.109 3.891 18 O -0.125 6.125 19 C -0.464 4.464 20 H 0.123 0.877 21 C -0.140 4.140 22 N -0.520 5.520 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.194 4.194 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.232 0.768 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.089 0.911 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.072 6.683 -23.870 24.978 hybrid contribution -0.311 0.641 0.327 0.784 sum -3.383 7.324 -23.543 24.887 Atomic orbital electron populations 1.22031 0.92886 1.03464 1.02498 1.22922 0.95796 0.95381 0.84245 0.91116 1.88915 1.39920 1.67715 1.32476 1.23597 0.87408 0.96448 0.95675 1.23494 1.01596 0.98546 0.95792 1.21577 0.91416 0.90222 0.90597 1.22309 0.96430 1.01509 1.01699 1.46203 1.53228 1.14624 1.24459 1.20733 0.79652 0.88981 0.80418 1.90733 1.58828 1.18384 1.70382 1.20604 0.99811 0.97940 0.95078 1.18635 0.94579 0.97960 0.92333 1.20400 0.97687 1.04152 0.98473 1.20733 0.98465 0.97439 0.92763 1.21297 0.96637 1.06049 0.99701 1.19004 0.90432 0.93373 0.86309 1.83564 1.48400 1.60363 1.20153 1.20763 1.07459 1.24897 0.93259 0.87661 1.24452 0.99117 0.96229 0.94209 1.69652 1.39134 1.36753 1.06439 0.86186 0.82490 0.80987 0.77259 1.19902 1.20819 1.18414 1.19927 1.01209 1.06465 0.91763 0.91156 0.90731 0.91874 0.88746 0.92144 0.89593 0.89161 0.91413 0.89577 0.92058 0.76756 0.88371 0.88295 0.87815 0.87212 0.85012 0.91112 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.40 37.16 0.31 -0.77 16 2 C 0.07 0.61 3.86 -26.15 -0.10 0.51 16 3 H 0.07 0.48 7.48 -51.93 -0.39 0.09 16 4 O -0.37 -3.63 11.19 -35.23 -0.39 -4.03 16 5 C 0.05 0.38 7.72 38.21 0.29 0.67 16 6 C -0.16 -1.55 5.95 -24.73 -0.15 -1.69 16 7 C 0.15 1.41 0.95 -130.29 -0.12 1.28 16 8 C -0.16 -1.71 7.21 37.16 0.27 -1.44 16 9 N -0.73 -6.66 5.16 -46.19 -0.24 -6.90 16 10 C 0.52 6.56 7.03 -10.99 -0.08 6.48 16 11 O -0.51 -8.77 13.01 5.56 0.07 -8.70 16 12 C -0.09 -1.11 5.83 -29.03 -0.17 -1.28 16 13 C -0.03 -0.58 4.37 -104.65 -0.46 -1.04 16 14 C -0.19 -3.21 9.70 -39.54 -0.38 -3.60 16 15 C -0.08 -1.42 10.04 -39.61 -0.40 -1.81 16 16 C -0.22 -4.85 9.17 -39.39 -0.36 -5.21 16 17 C 0.16 3.82 6.65 -39.10 -0.26 3.56 16 18 O -0.22 -5.93 8.59 0.05 0.00 -5.93 16 19 C -0.39 -11.16 9.95 30.88 0.31 -10.86 16 20 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 21 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 22 N -0.88 -25.86 13.96 55.48 0.77 -25.09 16 23 Si 0.91 22.04 28.62 -169.99 -4.86 17.18 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 27 C -0.17 -3.54 9.64 -39.40 -0.38 -3.92 16 28 H 0.07 0.53 6.67 -51.93 -0.35 0.18 16 29 H 0.07 0.47 6.87 -51.93 -0.36 0.11 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.87 7.85 -51.93 -0.41 0.46 16 34 H 0.09 1.05 6.96 -51.93 -0.36 0.69 16 35 H 0.07 0.63 6.78 -51.93 -0.35 0.28 16 36 H 0.09 1.20 6.01 -51.93 -0.31 0.89 16 37 H 0.06 0.59 6.74 -51.93 -0.35 0.24 16 38 H 0.40 2.42 8.11 -40.82 -0.33 2.08 16 39 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 43 H 0.13 3.07 5.64 -52.49 -0.30 2.77 16 44 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.11 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -33.25 361.41 -7.27 -40.52 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.30 Total: 4.91 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -1.77 Total: -17.42 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.54 Total: -31.99 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.32 Total: -18.66 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.25 -7.27 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784253289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.500 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds