Wall clock time and date at job start Tue Mar 31 2020 13:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.99213 * 2 1 4 4 O 1.43738 * 109.87553 * 121.08563 * 2 1 3 5 5 C 1.44387 * 106.97512 * 145.93721 * 4 2 1 6 6 C 1.54996 * 103.48913 * 319.93562 * 5 4 2 7 7 C 1.54105 * 109.87692 * 238.91458 * 2 1 3 8 8 C 1.53000 * 110.48886 * 357.22560 * 7 2 1 9 9 N 1.46496 * 110.48533 * 119.73843 * 7 2 1 10 10 C 1.34782 * 120.00059 * 179.97438 * 9 7 2 11 11 O 1.21277 * 119.99831 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99959 * 180.02562 * 10 9 7 13 13 C 1.50706 * 109.46915 * 180.02562 * 12 10 9 14 14 C 1.38325 * 119.96360 * 269.72709 * 13 12 10 15 15 C 1.38281 * 120.13547 * 179.76818 * 14 13 12 16 16 C 1.38115 * 120.06998 * 0.50681 * 15 14 13 17 17 C 1.38859 * 119.93238 * 359.74454 * 16 15 14 18 18 O 1.35743 * 120.07246 * 180.02562 * 17 16 15 19 19 C 1.34838 * 117.00081 * 354.43846 * 18 17 16 20 20 H 1.07999 * 119.99339 * 5.05638 * 19 18 17 21 21 C 1.38645 * 120.00522 * 185.05894 * 19 18 17 22 22 N 1.31560 * 119.99864 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00255 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47104 * 59.99863 * 23 21 19 25 25 H 1.48501 * 109.47142 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46856 * 299.99660 * 23 21 19 27 27 C 1.38077 * 119.96739 * 89.99933 * 13 12 10 28 28 H 1.09001 * 109.47062 * 181.08161 * 1 2 3 29 29 H 1.08995 * 109.47203 * 301.08698 * 1 2 3 30 30 H 1.09005 * 109.46529 * 61.08556 * 1 2 3 31 31 H 1.08999 * 110.61630 * 201.43845 * 5 4 2 32 32 H 1.08997 * 110.74934 * 78.50084 * 5 4 2 33 33 H 1.08999 * 110.90984 * 278.82871 * 6 5 4 34 34 H 1.08994 * 110.93492 * 155.23286 * 6 5 4 35 35 H 1.08996 * 109.47186 * 59.99730 * 8 7 2 36 36 H 1.08998 * 109.47102 * 179.97438 * 8 7 2 37 37 H 1.09007 * 109.46889 * 299.99825 * 8 7 2 38 38 H 0.97000 * 120.00295 * 359.97438 * 9 7 2 39 39 H 1.08996 * 109.47289 * 299.99983 * 12 10 9 40 40 H 1.08998 * 109.47402 * 60.00624 * 12 10 9 41 41 H 1.08001 * 119.92800 * 359.97438 * 14 13 12 42 42 H 1.08003 * 119.95883 * 180.23104 * 15 14 13 43 43 H 1.08001 * 120.03526 * 179.77021 * 16 15 14 44 44 H 0.96997 * 120.00024 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.03197 * 359.95522 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6979 1.1576 5 6 3.2379 -1.3642 0.7647 6 6 2.9195 -1.8916 -0.6576 7 6 2.0540 -0.7483 -1.2411 8 6 0.8898 -1.3190 -2.0535 9 7 2.8685 0.1428 -2.0711 10 6 3.4248 -0.3177 -3.2091 11 8 3.2507 -1.4696 -3.5462 12 6 4.2631 0.5987 -4.0625 13 6 4.7629 -0.1551 -5.2680 14 6 5.9730 -0.8228 -5.2125 15 6 6.4327 -1.5196 -6.3149 16 6 5.6893 -1.5420 -7.4787 17 6 4.4766 -0.8684 -7.5394 18 8 3.7434 -0.8889 -8.6816 19 6 4.3006 -1.4834 -9.7560 20 1 5.2514 -1.9868 -9.6620 21 6 3.6529 -1.4483 -10.9814 22 7 2.4949 -0.8345 -11.0960 23 14 4.4245 -2.2724 -12.4697 24 1 4.5994 -3.7217 -12.1977 25 1 3.5401 -2.0927 -13.6490 26 1 5.7476 -1.6573 -12.7455 27 6 4.0151 -0.1738 -6.4286 28 1 -0.3633 -1.0275 0.0194 29 1 -0.3633 0.5306 0.8800 30 1 -0.3632 0.4969 -0.8996 31 1 3.4584 -2.1909 1.4401 32 1 4.0702 -0.6610 0.7360 33 1 2.3539 -2.8221 -0.6099 34 1 3.8328 -2.0229 -1.2377 35 1 0.2403 -0.5061 -2.3780 36 1 1.2785 -1.8436 -2.9263 37 1 0.3213 -2.0136 -1.4349 38 1 3.0075 1.0642 -1.8016 39 1 3.6589 1.4453 -4.3886 40 1 5.1120 0.9603 -3.4821 41 1 6.5584 -0.8027 -4.3051 42 1 7.3762 -2.0430 -6.2672 43 1 6.0507 -2.0833 -8.3406 44 1 2.0416 -0.8103 -11.9532 45 1 3.0721 0.3509 -6.4725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784253292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:05 Heat of formation + Delta-G solvation = -104.878903 kcal Electronic energy + Delta-G solvation = -26717.351746 eV Core-core repulsion = 22892.739563 eV Total energy + Delta-G solvation = -3824.612184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81225 -40.80705 -39.81854 -38.16765 -35.95693 -34.34954 -33.76779 -32.99109 -32.09557 -30.84625 -28.70449 -28.29907 -27.25532 -25.91160 -23.71991 -23.26298 -22.72915 -21.31268 -20.53936 -19.50326 -18.85961 -18.33200 -17.58436 -16.91082 -16.76206 -16.58003 -16.34601 -16.12674 -15.80637 -15.69341 -15.44461 -15.04952 -14.78114 -14.70757 -14.32619 -14.00061 -13.81486 -13.72628 -13.56630 -13.29909 -12.95325 -12.83417 -12.65427 -12.59982 -12.42753 -12.35607 -12.21711 -12.19668 -12.13212 -11.98047 -11.73683 -11.20428 -10.81195 -10.69985 -10.67290 -10.11107 -9.62320 -8.97006 -8.47033 -6.15707 0.53006 0.76848 1.33483 1.44761 1.50110 1.70253 2.13308 2.17929 2.81372 2.86884 3.18679 3.41350 3.45192 3.69148 3.78272 3.82171 4.05916 4.09311 4.12227 4.19009 4.32624 4.34985 4.45349 4.54440 4.59965 4.62686 4.65990 4.71368 4.72824 4.74660 4.84980 4.93262 5.01621 5.06297 5.08252 5.12979 5.16095 5.31714 5.39574 5.52023 5.65984 5.73699 5.76352 5.89857 6.02930 6.24510 6.60477 6.97482 7.34473 7.79293 8.76370 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.023741 B = 0.002599 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.107813 B =10768.956052 C =11383.245701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.079 3.921 3 H 0.093 0.907 4 O -0.385 6.385 5 C 0.050 3.950 6 C -0.157 4.157 7 C 0.146 3.854 8 C -0.159 4.159 9 N -0.709 5.709 10 C 0.518 3.482 11 O -0.562 6.562 12 C -0.092 4.092 13 C -0.023 4.023 14 C -0.180 4.180 15 C -0.074 4.074 16 C -0.248 4.248 17 C 0.112 3.888 18 O -0.235 6.235 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.019 2.981 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.256 1.256 27 C -0.192 4.192 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.417 0.583 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.273 0.727 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 4.416 24.412 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.021 3.979 3 H 0.110 0.890 4 O -0.305 6.305 5 C -0.026 4.026 6 C -0.195 4.195 7 C 0.060 3.940 8 C -0.217 4.217 9 N -0.365 5.365 10 C 0.305 3.695 11 O -0.440 6.440 12 C -0.131 4.131 13 C -0.024 4.024 14 C -0.198 4.198 15 C -0.092 4.092 16 C -0.267 4.267 17 C 0.062 3.938 18 O -0.142 6.142 19 C -0.491 4.491 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.838 3.162 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.180 1.180 27 C -0.211 4.211 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.255 0.745 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.162 0.838 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.122 3.733 24.192 24.570 hybrid contribution 0.114 -0.214 -1.335 1.357 sum 2.236 3.519 22.857 23.234 Atomic orbital electron populations 1.22052 0.92292 1.03285 1.03326 1.22986 0.96290 0.95882 0.82784 0.88961 1.88905 1.40477 1.68028 1.33058 1.23644 0.87372 0.97054 0.94548 1.23439 1.00736 0.98498 0.96868 1.21606 0.90948 0.90533 0.90957 1.22269 0.97138 1.01741 1.00565 1.45966 1.52014 1.15401 1.23079 1.20825 0.79436 0.88239 0.80987 1.90736 1.60820 1.20637 1.71806 1.20715 1.01712 0.97521 0.93202 1.19179 0.93873 0.96741 0.92606 1.20961 0.97435 1.02092 0.99321 1.21124 0.99117 0.97219 0.91753 1.21290 0.97335 1.07196 1.00924 1.19883 0.91473 0.94537 0.87913 1.83933 1.42057 1.70933 1.17258 1.21778 1.06823 1.34150 0.86354 0.88315 1.26599 0.96421 0.97804 1.01241 1.70183 1.16220 1.42896 1.26767 0.84652 0.78162 0.78514 0.74894 1.18361 1.19452 1.17983 1.20214 1.01927 1.06015 0.92989 0.91895 0.91038 0.89917 0.87653 0.90744 0.90520 0.90810 0.91219 0.93339 0.90588 0.74488 0.86187 0.83934 0.83524 0.83840 0.86591 0.91846 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.40 71.98 0.60 -1.35 16 2 C 0.08 1.12 3.86 30.97 0.12 1.24 16 3 H 0.09 0.95 7.48 -2.39 -0.02 0.93 16 4 O -0.39 -6.74 11.19 -148.98 -1.67 -8.41 16 5 C 0.05 0.74 7.72 72.67 0.56 1.30 16 6 C -0.16 -3.03 5.95 31.90 0.19 -2.84 16 7 C 0.15 2.65 0.95 4.60 0.00 2.65 16 8 C -0.16 -3.49 7.20 71.98 0.52 -2.97 16 9 N -0.71 -11.78 5.16 -418.44 -2.16 -13.94 16 10 C 0.52 12.80 7.03 87.66 0.62 13.42 16 11 O -0.56 -19.95 13.01 -3.02 -0.04 -19.99 16 12 C -0.09 -2.01 5.83 29.10 0.17 -1.84 16 13 C -0.02 -0.80 4.37 -19.88 -0.09 -0.88 16 14 C -0.18 -5.78 9.70 22.30 0.22 -5.56 16 15 C -0.07 -2.69 10.04 22.25 0.22 -2.47 16 16 C -0.25 -11.47 9.17 22.39 0.21 -11.26 16 17 C 0.11 5.89 6.65 22.58 0.15 6.04 16 18 O -0.23 -14.79 9.76 -22.75 -0.22 -15.02 16 19 C -0.41 -25.13 9.49 67.92 0.64 -24.49 16 20 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 21 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 22 N -0.92 -58.11 13.67 21.61 0.30 -57.81 16 23 Si 1.02 44.08 29.55 68.60 2.03 46.10 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 27 C -0.19 -8.59 9.65 22.39 0.22 -8.38 16 28 H 0.06 0.90 6.71 -2.39 -0.02 0.88 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.93 6.83 -2.38 -0.02 0.91 16 31 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.58 7.85 -2.39 -0.02 1.57 16 34 H 0.07 1.68 6.96 -2.39 -0.02 1.67 16 35 H 0.07 1.37 6.72 -2.39 -0.02 1.35 16 36 H 0.05 1.46 6.01 -2.39 -0.01 1.45 16 37 H 0.08 1.48 6.80 -2.38 -0.02 1.46 16 38 H 0.42 3.79 8.11 -92.71 -0.75 3.04 16 39 H 0.12 2.19 8.08 -2.39 -0.02 2.17 16 40 H 0.14 1.88 8.08 -2.39 -0.02 1.86 16 41 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 42 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 43 H 0.12 5.43 5.64 -2.91 -0.02 5.42 16 44 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 45 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -82.33 362.53 3.32 -79.01 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 0.27 Total: 28.36 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 4.82 Total: -38.30 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -1.86 Total: -71.75 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.93 Total: -43.42 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -82.33 3.32 -79.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784253292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.871 kcal (2) G-P(sol) polarization free energy of solvation -82.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds