Wall clock time and date at job start Tue Mar 31 2020 12:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46895 * 2 1 4 4 N 1.46500 * 109.46813 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99827 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00087 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99829 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.47139 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47139 * 179.97438 * 8 7 5 10 10 O 1.20822 * 120.00052 * 0.02562 * 9 8 7 11 11 O 1.34227 * 119.99544 * 180.02562 * 9 8 7 12 12 C 1.45205 * 116.99795 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47141 * 180.02562 * 12 11 9 14 14 C 1.38638 * 119.74606 * 269.72300 * 13 12 11 15 15 C 1.37621 * 120.24755 * 179.72019 * 14 13 12 16 16 C 1.40718 * 119.74108 * 0.57711 * 15 14 13 17 17 C 1.41399 * 120.24264 * 179.67662 * 16 15 14 18 18 H 1.08000 * 119.99997 * 204.39703 * 17 16 15 19 19 C 1.39945 * 119.99725 * 24.40249 * 17 16 15 20 20 N 1.30824 * 120.00405 * 17.85665 * 19 17 16 21 21 Si 1.86797 * 119.99936 * 197.85493 * 19 17 16 22 22 H 1.48499 * 109.47149 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47189 * 120.00075 * 21 19 17 24 24 H 1.48505 * 109.47249 * 240.00131 * 21 19 17 25 25 C 1.40713 * 119.51470 * 359.70015 * 16 15 14 26 26 C 1.37621 * 119.74491 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47119 * 300.00143 * 1 2 3 29 29 H 1.09004 * 109.47065 * 60.00231 * 1 2 3 30 30 H 1.08994 * 109.47335 * 239.99588 * 2 1 3 31 31 H 1.09001 * 109.46585 * 119.99630 * 2 1 3 32 32 H 1.09002 * 109.47354 * 60.00001 * 3 2 1 33 33 H 1.09004 * 109.47075 * 299.99762 * 3 2 1 34 34 H 0.97002 * 120.00066 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.46843 * 60.00321 * 7 5 4 36 36 H 1.08996 * 109.47506 * 300.00466 * 7 5 4 37 37 H 1.09002 * 109.46830 * 60.00510 * 8 7 5 38 38 H 1.08996 * 109.47464 * 300.00690 * 8 7 5 39 39 H 1.09007 * 109.46874 * 299.99831 * 12 11 9 40 40 H 1.08999 * 109.46972 * 59.99668 * 12 11 9 41 41 H 1.07996 * 119.87536 * 359.97438 * 14 13 12 42 42 H 1.08002 * 120.12997 * 180.27512 * 15 14 13 43 43 H 0.97002 * 120.00394 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.13056 * 179.97438 * 25 16 15 45 45 H 1.07993 * 119.87567 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6097 0.0002 6 8 3.5724 3.6600 -0.0002 7 6 5.6859 2.6097 0.0014 8 6 6.1959 4.0522 0.0000 9 6 7.7029 4.0522 0.0019 10 8 8.3070 3.0058 0.0036 11 8 8.3740 5.2147 0.0016 12 6 9.8240 5.1387 0.0028 13 6 10.4000 6.5313 0.0029 14 6 10.6693 7.1643 -1.2007 15 6 11.1900 8.4382 -1.2127 16 6 11.4602 9.0933 0.0030 17 6 12.0016 10.3996 0.0030 18 1 12.5645 10.7508 0.8552 19 6 11.8079 11.2373 -1.1012 20 7 10.8620 10.9724 -1.9653 21 14 12.8998 12.7337 -1.3412 22 1 13.8859 12.8098 -0.2334 23 1 13.6183 12.6198 -2.6358 24 1 12.0637 13.9611 -1.3455 25 6 11.1883 8.4388 1.2186 26 6 10.6624 7.1671 1.2066 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9900 0.6024 0.0006 35 1 6.0499 2.0952 -0.8879 36 1 6.0485 2.0965 0.8920 37 1 5.8319 4.5671 0.8891 38 1 5.8332 4.5650 -0.8908 39 1 10.1592 4.6072 0.8936 40 1 10.1607 4.6059 -0.8864 41 1 10.4659 6.6575 -2.1324 42 1 11.3949 8.9313 -2.1515 43 1 10.7280 11.5529 -2.7309 44 1 11.3923 8.9322 2.1574 45 1 10.4524 6.6630 2.1383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785319484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:25 Heat of formation + Delta-G solvation = -132.950208 kcal Electronic energy + Delta-G solvation = -24727.834781 eV Core-core repulsion = 20902.005334 eV Total energy + Delta-G solvation = -3825.829447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38120 -39.73739 -37.68957 -36.30411 -36.04895 -33.85899 -33.33096 -32.74194 -30.78029 -29.36041 -27.82702 -26.96085 -25.18254 -23.61609 -22.11791 -21.08934 -20.95561 -20.11778 -20.02804 -17.91987 -17.38427 -16.78108 -16.63213 -16.39577 -16.09705 -15.83729 -15.35775 -15.16381 -14.34607 -14.01565 -13.98706 -13.68268 -13.41567 -13.32831 -12.85355 -12.75875 -12.59177 -12.41638 -12.22498 -12.05977 -11.97557 -11.71652 -11.63565 -11.42316 -11.36240 -11.17921 -10.97851 -10.83773 -10.44028 -10.26598 -10.13290 -10.12340 -9.68198 -9.46412 -9.43437 -9.21538 -7.55280 -7.44084 -6.85571 -4.45392 2.37455 2.41460 2.44643 2.76520 3.00844 3.01920 3.04450 3.09208 3.47022 3.86796 4.31629 4.40433 4.46752 4.54133 4.68420 4.80561 4.85370 5.12776 5.14193 5.15441 5.30437 5.40894 5.51814 5.59196 5.62276 5.62618 5.68608 5.71107 5.71980 5.77138 6.07591 6.08788 6.26266 6.32333 6.86305 6.89665 6.98648 7.12543 7.19438 7.27642 7.52827 7.74998 7.91668 7.97022 8.01860 8.07007 8.20364 8.55135 8.79725 8.87906 10.08210 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027769 B = 0.001738 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.083504 B =16109.641787 C =16688.340303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.735 5.735 5 C 0.514 3.486 6 O -0.536 6.536 7 C -0.128 4.128 8 C -0.102 4.102 9 C 0.458 3.542 10 O -0.527 6.527 11 O -0.347 6.347 12 C 0.136 3.864 13 C -0.237 4.237 14 C -0.075 4.075 15 C -0.170 4.170 16 C 0.118 3.882 17 C -0.456 4.456 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.785 5.785 21 Si 0.909 3.091 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.230 4.230 26 C -0.063 4.063 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.402 0.598 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.282 0.718 44 H 0.095 0.905 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 -18.300 1.446 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.387 5.387 5 C 0.301 3.699 6 O -0.413 6.413 7 C -0.168 4.168 8 C -0.140 4.140 9 C 0.301 3.699 10 O -0.418 6.418 11 O -0.264 6.264 12 C 0.064 3.936 13 C -0.239 4.239 14 C -0.094 4.094 15 C -0.190 4.190 16 C 0.115 3.885 17 C -0.485 4.485 18 H 0.099 0.901 19 C -0.144 4.144 20 N -0.409 5.409 21 Si 0.734 3.266 22 H -0.183 1.183 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.250 4.250 26 C -0.082 4.082 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.236 0.764 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.474 -17.703 1.234 22.900 hybrid contribution 0.666 0.190 -0.195 0.719 sum -13.809 -17.513 1.038 22.326 Atomic orbital electron populations 1.21684 0.94495 1.02202 1.02432 1.21741 0.97073 0.95811 1.02779 1.21419 0.79540 0.97163 1.02594 1.46019 1.07418 1.08848 1.76458 1.20670 0.90139 0.83569 0.75533 1.90746 1.70552 1.31167 1.48819 1.21422 0.91130 0.98146 1.06109 1.21048 0.88140 0.97469 1.07369 1.23573 0.91511 0.82481 0.72289 1.90612 1.71013 1.33368 1.46771 1.86738 1.24171 1.33191 1.82258 1.21736 0.74314 0.96685 1.00844 1.18692 1.14713 0.96312 0.94157 1.20539 0.98609 0.95179 0.95069 1.21293 1.05506 0.93334 0.98820 1.17695 0.87479 0.92351 0.90958 1.19710 1.29468 0.97383 1.01902 0.90126 1.25974 0.94053 0.99618 0.94764 1.69837 1.24162 1.36257 1.10659 0.86239 0.80662 0.80312 0.79431 1.18276 1.19594 1.19874 1.20964 1.10571 0.96295 0.97129 1.20389 0.97891 0.94725 0.95184 0.92153 0.92296 0.92286 0.91256 0.91263 0.91418 0.91408 0.76383 0.87853 0.87856 0.87041 0.87004 0.92098 0.92030 0.89326 0.86237 0.90669 0.88708 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.14 -0.58 6.05 -26.73 -0.16 -0.74 16 3 C 0.12 0.79 5.67 -4.04 -0.02 0.77 16 4 N -0.73 -5.22 5.56 -60.29 -0.33 -5.56 16 5 C 0.51 5.26 7.83 -10.98 -0.09 5.17 16 6 O -0.54 -7.65 15.98 5.55 0.09 -7.56 16 7 C -0.13 -1.20 4.99 -27.88 -0.14 -1.34 16 8 C -0.10 -1.23 5.10 -27.88 -0.14 -1.38 16 9 C 0.46 7.15 7.96 36.01 0.29 7.43 16 10 O -0.53 -8.92 15.73 -18.75 -0.29 -9.21 16 11 O -0.35 -6.49 10.20 -39.25 -0.40 -6.89 16 12 C 0.14 2.61 5.58 36.00 0.20 2.81 16 13 C -0.24 -5.30 5.54 -104.33 -0.58 -5.88 16 14 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 15 C -0.17 -4.40 8.70 -38.87 -0.34 -4.74 16 16 C 0.12 3.12 5.58 -106.82 -0.60 2.52 16 17 C -0.46 -11.89 9.05 -37.74 -0.34 -12.24 16 18 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 19 C 0.07 1.84 5.14 -17.34 -0.09 1.76 16 20 N -0.78 -20.00 10.95 55.55 0.61 -19.39 16 21 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 25 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 26 C -0.06 -1.44 9.67 -39.66 -0.38 -1.82 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.74 8.47 -40.82 -0.35 1.40 16 35 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 36 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.11 1.32 8.10 -51.93 -0.42 0.90 16 38 H 0.11 1.34 8.10 -51.93 -0.42 0.92 16 39 H 0.06 1.10 8.07 -51.92 -0.42 0.68 16 40 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.12 3.16 6.16 -52.49 -0.32 2.84 16 43 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 44 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 45 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -31.08 386.12 -9.30 -40.38 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.97 Total: 5.27 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.79 Total: -16.08 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.27 Total: -24.95 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.61 Total: -23.66 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.08 -9.30 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785319484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.570 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds