Wall clock time and date at job start Tue Mar 31 2020 12:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46895 * 2 1 4 4 N 1.46500 * 109.46813 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99827 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00087 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99829 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.47139 * 179.97438 * 7 5 4 9 9 C 1.50702 * 109.47139 * 179.97438 * 8 7 5 10 10 O 1.20822 * 120.00052 * 0.02562 * 9 8 7 11 11 O 1.34227 * 119.99544 * 180.02562 * 9 8 7 12 12 C 1.45205 * 116.99795 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47141 * 180.02562 * 12 11 9 14 14 C 1.38638 * 119.74606 * 269.72300 * 13 12 11 15 15 C 1.37621 * 120.24755 * 179.72019 * 14 13 12 16 16 C 1.40718 * 119.74108 * 0.57711 * 15 14 13 17 17 C 1.41399 * 120.24264 * 179.67662 * 16 15 14 18 18 H 1.08000 * 119.99997 * 204.39703 * 17 16 15 19 19 C 1.39945 * 119.99725 * 24.40249 * 17 16 15 20 20 N 1.30824 * 120.00405 * 17.85665 * 19 17 16 21 21 Si 1.86797 * 119.99936 * 197.85493 * 19 17 16 22 22 H 1.48499 * 109.47149 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47189 * 120.00075 * 21 19 17 24 24 H 1.48505 * 109.47249 * 240.00131 * 21 19 17 25 25 C 1.40713 * 119.51470 * 359.70015 * 16 15 14 26 26 C 1.37621 * 119.74491 * 0.02562 * 25 16 15 27 27 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47119 * 300.00143 * 1 2 3 29 29 H 1.09004 * 109.47065 * 60.00231 * 1 2 3 30 30 H 1.08994 * 109.47335 * 239.99588 * 2 1 3 31 31 H 1.09001 * 109.46585 * 119.99630 * 2 1 3 32 32 H 1.09002 * 109.47354 * 60.00001 * 3 2 1 33 33 H 1.09004 * 109.47075 * 299.99762 * 3 2 1 34 34 H 0.97002 * 120.00066 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.46843 * 60.00321 * 7 5 4 36 36 H 1.08996 * 109.47506 * 300.00466 * 7 5 4 37 37 H 1.09002 * 109.46830 * 60.00510 * 8 7 5 38 38 H 1.08996 * 109.47464 * 300.00690 * 8 7 5 39 39 H 1.09007 * 109.46874 * 299.99831 * 12 11 9 40 40 H 1.08999 * 109.46972 * 59.99668 * 12 11 9 41 41 H 1.07996 * 119.87536 * 359.97438 * 14 13 12 42 42 H 1.08002 * 120.12997 * 180.27512 * 15 14 13 43 43 H 0.97002 * 120.00394 * 180.02562 * 20 19 17 44 44 H 1.07999 * 120.13056 * 179.97438 * 25 16 15 45 45 H 1.07993 * 119.87567 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6097 0.0002 6 8 3.5724 3.6600 -0.0002 7 6 5.6859 2.6097 0.0014 8 6 6.1959 4.0522 0.0000 9 6 7.7029 4.0522 0.0019 10 8 8.3070 3.0058 0.0036 11 8 8.3740 5.2147 0.0016 12 6 9.8240 5.1387 0.0028 13 6 10.4000 6.5313 0.0029 14 6 10.6693 7.1643 -1.2007 15 6 11.1900 8.4382 -1.2127 16 6 11.4602 9.0933 0.0030 17 6 12.0016 10.3996 0.0030 18 1 12.5645 10.7508 0.8552 19 6 11.8079 11.2373 -1.1012 20 7 10.8620 10.9724 -1.9653 21 14 12.8998 12.7337 -1.3412 22 1 13.8859 12.8098 -0.2334 23 1 13.6183 12.6198 -2.6358 24 1 12.0637 13.9611 -1.3455 25 6 11.1883 8.4388 1.2186 26 6 10.6624 7.1671 1.2066 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9900 0.6024 0.0006 35 1 6.0499 2.0952 -0.8879 36 1 6.0485 2.0965 0.8920 37 1 5.8319 4.5671 0.8891 38 1 5.8332 4.5650 -0.8908 39 1 10.1592 4.6072 0.8936 40 1 10.1607 4.6059 -0.8864 41 1 10.4659 6.6575 -2.1324 42 1 11.3949 8.9313 -2.1515 43 1 10.7280 11.5529 -2.7309 44 1 11.3923 8.9322 2.1574 45 1 10.4524 6.6630 2.1383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785319484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:24 Heat of formation + Delta-G solvation = -149.740126 kcal Electronic energy + Delta-G solvation = -24728.562846 eV Core-core repulsion = 20902.005334 eV Total energy + Delta-G solvation = -3826.557512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57345 -40.69319 -39.48227 -37.57811 -36.81958 -35.68578 -34.20620 -33.38534 -32.54805 -31.23448 -29.19857 -28.03942 -26.17798 -25.14610 -22.96052 -22.57861 -22.10369 -21.76825 -21.02365 -19.27889 -18.98448 -17.94174 -17.74773 -17.30872 -17.05997 -16.92894 -16.84366 -16.01327 -15.86293 -15.56639 -15.42940 -14.72014 -14.52969 -14.34636 -13.93222 -13.85146 -13.82089 -13.71250 -13.52907 -13.30685 -13.15682 -12.86624 -12.83101 -12.67651 -12.59638 -12.26632 -12.09088 -12.03179 -11.74989 -11.71264 -11.60629 -11.40923 -11.28652 -11.04872 -10.98565 -10.12101 -9.44303 -9.33622 -8.69261 -6.40325 0.73001 1.10636 1.19492 1.38080 1.42275 1.54263 1.58309 1.82105 2.19254 2.33465 2.73412 3.50295 3.69264 3.89934 3.96450 4.02050 4.05085 4.08838 4.10337 4.13704 4.36168 4.47640 4.50920 4.55195 4.60256 4.66378 4.76843 4.77074 4.87839 4.89953 5.00165 5.11600 5.15761 5.24888 5.30148 5.33907 5.39114 5.48301 5.54937 5.64790 5.88357 6.05238 6.14001 6.31616 6.50858 6.64023 6.76016 6.88087 6.96797 7.21421 8.27644 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.027769 B = 0.001738 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.083504 B =16109.641787 C =16688.340303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.114 3.886 4 N -0.719 5.719 5 C 0.515 3.485 6 O -0.583 6.583 7 C -0.119 4.119 8 C -0.097 4.097 9 C 0.462 3.538 10 O -0.536 6.536 11 O -0.366 6.366 12 C 0.141 3.859 13 C -0.233 4.233 14 C -0.081 4.081 15 C -0.194 4.194 16 C 0.086 3.914 17 C -0.493 4.493 18 H 0.080 0.920 19 C 0.035 3.965 20 N -0.819 5.819 21 Si 0.985 3.015 22 H -0.256 1.256 23 H -0.263 1.263 24 H -0.265 1.265 25 C -0.246 4.246 26 C -0.065 4.065 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.418 0.582 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.290 0.710 44 H 0.103 0.897 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.536 -20.107 1.713 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.009 4.009 4 N -0.371 5.371 5 C 0.302 3.698 6 O -0.463 6.463 7 C -0.159 4.159 8 C -0.135 4.135 9 C 0.307 3.693 10 O -0.427 6.427 11 O -0.282 6.282 12 C 0.068 3.932 13 C -0.234 4.234 14 C -0.099 4.099 15 C -0.213 4.213 16 C 0.084 3.916 17 C -0.522 4.522 18 H 0.098 0.902 19 C -0.181 4.181 20 N -0.445 5.445 21 Si 0.805 3.195 22 H -0.180 1.180 23 H -0.188 1.188 24 H -0.190 1.190 25 C -0.265 4.265 26 C -0.084 4.084 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.255 0.745 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.121 0.879 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.887 -19.581 1.508 24.644 hybrid contribution 0.676 0.561 -0.249 0.914 sum -14.211 -19.020 1.259 23.776 Atomic orbital electron populations 1.21704 0.94376 1.02756 1.02144 1.21687 0.97071 0.93950 1.03743 1.21472 0.79186 0.98802 1.01462 1.45926 1.07710 1.08788 1.74718 1.20798 0.90430 0.83612 0.74952 1.90734 1.71396 1.32894 1.51307 1.21381 0.90414 0.96501 1.07565 1.21092 0.85333 0.99530 1.07496 1.24106 0.92465 0.81389 0.71380 1.90606 1.71467 1.33423 1.47240 1.86696 1.23628 1.34996 1.82924 1.21585 0.74929 0.94552 1.02089 1.19053 1.13323 0.97538 0.93526 1.20791 0.97953 0.94583 0.96610 1.21269 1.07336 0.94516 0.98195 1.18060 0.88470 0.93180 0.91910 1.19957 1.30970 0.98097 1.03133 0.90206 1.26836 0.94905 1.02493 0.93886 1.69883 1.25417 1.37813 1.11339 0.85116 0.78568 0.76325 0.79463 1.17965 1.18778 1.19009 1.21184 1.11064 0.97355 0.96916 1.20722 0.96800 0.94162 0.96682 0.91140 0.92616 0.92643 0.90270 0.90229 0.92588 0.92640 0.74472 0.86423 0.86293 0.86798 0.86981 0.90592 0.91108 0.87520 0.87798 0.89875 0.87921 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.29 16 2 C -0.13 -0.82 6.05 30.60 0.19 -0.64 16 3 C 0.11 1.42 5.67 86.38 0.49 1.91 16 4 N -0.72 -8.84 5.56 -463.05 -2.57 -11.41 16 5 C 0.51 9.75 7.83 87.66 0.69 10.44 16 6 O -0.58 -16.39 15.98 -3.04 -0.05 -16.44 16 7 C -0.12 -1.95 4.99 29.85 0.15 -1.80 16 8 C -0.10 -2.17 5.10 29.85 0.15 -2.02 16 9 C 0.46 13.47 7.96 71.24 0.57 14.04 16 10 O -0.54 -16.77 15.73 21.97 0.35 -16.42 16 11 O -0.37 -13.01 10.20 -51.39 -0.52 -13.54 16 12 C 0.14 5.10 5.58 71.23 0.40 5.50 16 13 C -0.23 -10.19 5.54 -19.68 -0.11 -10.29 16 14 C -0.08 -3.82 9.67 22.22 0.21 -3.60 16 15 C -0.19 -10.31 8.70 22.73 0.20 -10.11 16 16 C 0.09 4.70 5.58 -21.29 -0.12 4.58 16 17 C -0.49 -26.53 9.05 23.46 0.21 -26.32 16 18 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 19 C 0.03 1.74 5.14 85.26 0.44 2.17 16 20 N -0.82 -42.86 10.95 21.83 0.24 -42.63 16 21 Si 0.99 37.75 29.59 68.60 2.03 39.78 16 22 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 24 H -0.27 -9.74 7.11 99.48 0.71 -9.04 16 25 C -0.25 -12.16 9.80 22.73 0.22 -11.93 16 26 C -0.07 -2.90 9.67 22.22 0.21 -2.69 16 27 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.05 0.40 8.14 -2.39 -0.02 0.39 16 29 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.84 8.14 -2.38 -0.02 0.83 16 34 H 0.42 2.44 8.47 -92.71 -0.79 1.66 16 35 H 0.12 1.63 8.10 -2.39 -0.02 1.61 16 36 H 0.12 1.62 8.10 -2.39 -0.02 1.60 16 37 H 0.11 2.55 8.10 -2.39 -0.02 2.53 16 38 H 0.11 2.56 8.10 -2.39 -0.02 2.54 16 39 H 0.08 2.53 8.07 -2.38 -0.02 2.51 16 40 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 41 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 42 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 43 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 44 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 45 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -68.19 386.12 4.29 -63.91 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.20 Total: 27.81 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 4.61 Total: -31.06 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: -2.33 Total: -54.04 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -0.23 Total: -46.40 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -68.19 4.29 -63.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785319484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.834 kcal (2) G-P(sol) polarization free energy of solvation -68.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds