Wall clock time and date at job start Tue Mar 31 2020 13:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47485 * 2 1 4 4 O 1.45197 * 109.47223 * 120.00139 * 2 1 3 5 5 C 1.34236 * 117.00277 * 149.99398 * 4 2 1 6 6 O 1.20823 * 119.99710 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99950 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.46958 * 180.02562 * 7 5 4 9 9 C 1.34774 * 119.99939 * 180.02562 * 8 7 5 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31511 * 120.00099 * 6.55948 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09001 * 109.46706 * 300.00184 * 1 2 3 29 29 H 1.09006 * 109.46941 * 59.99859 * 1 2 3 30 30 H 1.08992 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47367 * 239.99960 * 2 1 3 32 32 H 1.08998 * 109.47142 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46781 * 300.00294 * 3 2 1 34 34 H 1.09004 * 109.46790 * 60.00164 * 3 2 1 35 35 H 1.08997 * 109.47241 * 60.00150 * 7 5 4 36 36 H 1.09002 * 109.47264 * 300.00126 * 7 5 4 37 37 H 0.97001 * 120.00018 * 359.97438 * 8 7 5 38 38 H 1.08999 * 109.46642 * 59.99829 * 11 9 8 39 39 H 1.09002 * 109.46876 * 299.99722 * 11 9 8 40 40 H 0.96995 * 120.00371 * 354.73583 * 17 16 14 41 41 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 42 42 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 43 43 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 44 44 H 1.08002 * 119.99754 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1937 -1.3172 1.0851 6 8 3.8018 -1.2991 0.0412 7 6 3.7594 -2.0498 2.2742 8 7 5.0452 -2.6507 1.9111 9 6 5.7390 -3.3602 2.8231 10 8 5.2990 -3.5008 3.9446 11 6 7.0614 -3.9788 2.4494 12 6 7.6358 -4.7225 3.6567 13 1 6.8987 -5.4335 4.0300 14 6 7.9739 -3.7331 4.7421 15 1 8.2660 -2.7262 4.4829 16 6 7.9102 -4.1134 6.0658 17 7 7.6813 -5.3700 6.3787 18 14 8.1491 -2.8435 7.4148 19 1 9.5895 -2.7594 7.7661 20 1 7.6780 -1.5188 6.9368 21 1 7.3696 -3.2428 8.6141 22 6 8.8828 -5.4617 3.2447 23 6 9.9948 -4.7585 2.8206 24 6 11.1399 -5.4363 2.4463 25 6 11.1703 -6.8177 2.4884 26 6 10.0566 -7.5211 2.9075 27 6 8.9128 -6.8431 3.2855 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.0662 -2.8326 2.5822 36 1 3.9053 -1.3496 3.0967 37 1 5.3969 -2.5386 1.0141 38 1 7.7547 -3.1959 2.1418 39 1 6.9155 -4.6788 1.6267 40 1 7.4815 -6.0147 5.6820 41 1 9.9698 -3.6794 2.7841 42 1 12.0100 -4.8868 2.1185 43 1 12.0642 -7.3474 2.1934 44 1 10.0802 -8.6004 2.9400 45 1 8.0428 -7.3926 3.6133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793433133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:58 Heat of formation + Delta-G solvation = -111.408378 kcal Electronic energy + Delta-G solvation = -26247.292574 eV Core-core repulsion = 22422.397251 eV Total energy + Delta-G solvation = -3824.895323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88166 -39.19277 -38.30489 -37.16221 -34.55922 -33.92106 -33.46052 -31.36659 -30.10544 -29.47022 -27.85142 -27.67044 -24.90538 -23.06521 -22.37143 -21.66082 -20.85630 -20.31996 -19.66092 -17.98467 -17.21817 -16.71494 -16.55908 -16.15438 -15.56240 -15.35354 -14.98466 -14.51323 -14.33680 -14.04896 -13.72696 -13.63238 -13.60262 -13.10234 -12.95128 -12.68958 -12.60975 -12.48737 -12.32593 -12.23271 -12.06817 -11.86047 -11.46355 -11.29091 -10.94800 -10.91686 -10.70204 -10.68619 -10.42380 -10.14648 -10.04205 -9.66494 -9.17324 -8.84077 -8.62684 -8.26696 -8.13174 -7.63150 -6.23256 -3.91098 1.93577 2.19536 2.21167 2.28285 3.36430 3.50165 3.56503 3.61437 3.69940 4.36765 4.40867 4.52716 4.61068 4.67403 4.75659 5.14436 5.25709 5.28770 5.33099 5.37061 5.40544 5.46772 5.60475 5.63981 5.65157 5.71274 5.77043 5.77267 5.99712 6.07333 6.16734 6.18531 6.32250 6.42383 6.60535 6.69199 6.79273 6.93407 7.19876 7.23194 7.38272 7.46749 7.72045 7.86204 7.90855 8.22425 8.51101 8.87771 8.98149 9.78334 11.17165 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.003013 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.103152 B = 9292.098980 C =10568.051915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.171 4.171 4 O -0.349 6.349 5 C 0.462 3.538 6 O -0.507 6.507 7 C 0.129 3.871 8 N -0.743 5.743 9 C 0.519 3.481 10 O -0.496 6.496 11 C -0.115 4.115 12 C 0.072 3.928 13 H 0.052 0.948 14 C -0.570 4.570 15 H 0.046 0.954 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.066 2.934 19 H -0.291 1.291 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.031 4.031 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.405 0.595 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.270 0.730 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.939 7.666 -14.032 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.228 4.228 4 O -0.266 6.266 5 C 0.305 3.695 6 O -0.395 6.395 7 C 0.004 3.996 8 N -0.404 5.404 9 C 0.306 3.694 10 O -0.367 6.367 11 C -0.155 4.155 12 C 0.053 3.947 13 H 0.070 0.930 14 C -0.607 4.607 15 H 0.064 0.936 16 C -0.173 4.173 17 N -0.541 5.541 18 Si 0.896 3.104 19 H -0.219 1.219 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.032 4.032 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.241 0.759 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.015 7.768 -11.853 16.796 hybrid contribution 0.174 0.022 -2.176 2.183 sum -8.842 7.790 -14.029 18.321 Atomic orbital electron populations 1.21897 0.92223 1.03330 1.03260 1.22783 0.95081 0.92763 0.86880 1.22222 1.02302 0.95112 1.03186 1.86568 1.36206 1.62479 1.41329 1.23767 0.79355 0.76320 0.90048 1.90638 1.59284 1.58815 1.30730 1.20547 0.87870 0.98400 0.92764 1.46069 1.20621 1.56806 1.16863 1.20926 0.86419 0.77680 0.84383 1.90764 1.68656 1.57515 1.19756 1.21689 0.92934 1.00155 1.00739 1.17878 0.90104 0.95159 0.91572 0.92993 1.21564 1.50321 0.97003 0.91817 0.93573 1.25582 0.93673 0.99161 0.98905 1.70724 1.43559 1.02178 1.37650 0.83590 0.76219 0.74766 0.75844 1.21851 1.21651 1.21097 1.20808 0.98152 0.92869 0.91380 1.20921 0.92752 0.99659 0.99270 1.21014 0.97833 0.94331 1.01576 1.20828 0.98031 0.94374 1.03856 1.20964 0.93912 0.98824 1.00556 1.21063 0.97945 0.94526 1.01251 0.91209 0.90322 0.91566 0.89614 0.91838 0.90639 0.91357 0.87467 0.87318 0.75884 0.89999 0.91362 0.91813 0.86707 0.87444 0.87589 0.87460 0.87146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.57 37.16 0.36 -0.59 16 2 C 0.08 0.70 3.18 -26.73 -0.09 0.62 16 3 C -0.17 -1.33 9.55 37.16 0.35 -0.97 16 4 O -0.35 -3.87 9.88 -39.27 -0.39 -4.26 16 5 C 0.46 5.74 8.00 36.00 0.29 6.03 16 6 O -0.51 -7.15 14.89 -18.75 -0.28 -7.43 16 7 C 0.13 1.72 6.27 -5.19 -0.03 1.68 16 8 N -0.74 -11.38 5.53 -61.47 -0.34 -11.72 16 9 C 0.52 10.18 7.58 -10.98 -0.08 10.10 16 10 O -0.50 -11.96 15.02 5.55 0.08 -11.87 16 11 C -0.11 -2.22 4.94 -27.88 -0.14 -2.36 16 12 C 0.07 1.71 1.31 -92.92 -0.12 1.59 16 13 H 0.05 1.38 6.23 -51.93 -0.32 1.06 16 14 C -0.57 -15.36 6.40 -34.44 -0.22 -15.58 16 15 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 16 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 17 N -0.91 -27.44 13.63 55.43 0.76 -26.68 16 18 Si 1.07 26.18 29.91 -169.99 -5.08 21.10 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 C -0.03 -0.69 4.77 -104.62 -0.50 -1.19 16 23 C -0.11 -2.20 8.88 -39.59 -0.35 -2.55 16 24 C -0.13 -2.34 10.05 -39.58 -0.40 -2.73 16 25 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 26 C -0.12 -2.29 10.05 -39.59 -0.40 -2.69 16 27 C -0.13 -2.71 9.67 -39.59 -0.38 -3.09 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.81 7.16 -51.93 -0.37 0.44 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.40 5.59 7.44 -40.82 -0.30 5.28 16 38 H 0.08 1.49 7.86 -51.93 -0.41 1.08 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.27 8.09 6.68 -40.82 -0.27 7.82 16 41 H 0.11 2.28 7.80 -52.48 -0.41 1.87 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.11 2.27 7.95 -52.49 -0.42 1.85 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -33.52 382.29 -8.48 -42.00 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.79 Total: 7.07 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.21 Total: -13.97 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.42 Total: -38.41 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.58 Total: -23.56 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -5.08 Total: 21.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.52 -8.48 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793433133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.407 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds