Wall clock time and date at job start Tue Mar 31 2020 13:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47485 * 2 1 4 4 O 1.45197 * 109.47223 * 120.00139 * 2 1 3 5 5 C 1.34236 * 117.00277 * 149.99398 * 4 2 1 6 6 O 1.20823 * 119.99710 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99950 * 180.02562 * 5 4 2 8 8 N 1.46503 * 109.46958 * 180.02562 * 7 5 4 9 9 C 1.34774 * 119.99939 * 180.02562 * 8 7 5 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31511 * 120.00099 * 6.55948 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09001 * 109.46706 * 300.00184 * 1 2 3 29 29 H 1.09006 * 109.46941 * 59.99859 * 1 2 3 30 30 H 1.08992 * 109.47276 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47367 * 239.99960 * 2 1 3 32 32 H 1.08998 * 109.47142 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46781 * 300.00294 * 3 2 1 34 34 H 1.09004 * 109.46790 * 60.00164 * 3 2 1 35 35 H 1.08997 * 109.47241 * 60.00150 * 7 5 4 36 36 H 1.09002 * 109.47264 * 300.00126 * 7 5 4 37 37 H 0.97001 * 120.00018 * 359.97438 * 8 7 5 38 38 H 1.08999 * 109.46642 * 59.99829 * 11 9 8 39 39 H 1.09002 * 109.46876 * 299.99722 * 11 9 8 40 40 H 0.96995 * 120.00371 * 354.73583 * 17 16 14 41 41 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 42 42 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 43 43 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 44 44 H 1.08002 * 119.99754 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1937 -1.3172 1.0851 6 8 3.8018 -1.2991 0.0412 7 6 3.7594 -2.0498 2.2742 8 7 5.0452 -2.6507 1.9111 9 6 5.7390 -3.3602 2.8231 10 8 5.2990 -3.5008 3.9446 11 6 7.0614 -3.9788 2.4494 12 6 7.6358 -4.7225 3.6567 13 1 6.8987 -5.4335 4.0300 14 6 7.9739 -3.7331 4.7421 15 1 8.2660 -2.7262 4.4829 16 6 7.9102 -4.1134 6.0658 17 7 7.6813 -5.3700 6.3787 18 14 8.1491 -2.8435 7.4148 19 1 9.5895 -2.7594 7.7661 20 1 7.6780 -1.5188 6.9368 21 1 7.3696 -3.2428 8.6141 22 6 8.8828 -5.4617 3.2447 23 6 9.9948 -4.7585 2.8206 24 6 11.1399 -5.4363 2.4463 25 6 11.1703 -6.8177 2.4884 26 6 10.0566 -7.5211 2.9075 27 6 8.9128 -6.8431 3.2855 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.0662 -2.8326 2.5822 36 1 3.9053 -1.3496 3.0967 37 1 5.3969 -2.5386 1.0141 38 1 7.7547 -3.1959 2.1418 39 1 6.9155 -4.6788 1.6267 40 1 7.4815 -6.0147 5.6820 41 1 9.9698 -3.6794 2.7841 42 1 12.0100 -4.8868 2.1185 43 1 12.0642 -7.3474 2.1934 44 1 10.0802 -8.6004 2.9400 45 1 8.0428 -7.3926 3.6133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793433133.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:57 Heat of formation + Delta-G solvation = -131.089773 kcal Electronic energy + Delta-G solvation = -26248.146023 eV Core-core repulsion = 22422.397251 eV Total energy + Delta-G solvation = -3825.748772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89323 -40.73544 -39.80821 -38.15312 -36.23354 -35.43529 -34.20785 -33.29338 -31.60225 -30.91524 -29.20837 -28.23000 -26.77128 -24.72056 -23.40789 -23.14137 -21.86972 -21.68040 -21.26325 -19.20617 -18.70247 -18.18543 -17.64014 -17.58031 -17.00277 -16.64524 -16.25737 -15.82897 -15.64283 -15.62761 -15.28197 -14.89484 -14.72194 -14.41858 -14.16717 -14.03302 -13.97100 -13.74418 -13.45628 -13.23970 -13.19422 -13.13240 -12.77594 -12.67345 -12.59406 -12.05067 -11.95932 -11.94646 -11.84350 -11.71229 -11.56454 -11.47905 -10.86307 -10.63038 -10.32633 -10.21274 -9.63376 -9.26646 -8.43109 -6.09288 0.68634 0.74263 0.92154 1.25939 1.50224 1.61476 1.75212 1.79214 2.33629 2.62894 3.11384 3.39653 3.44798 3.77146 3.89895 4.01091 4.10834 4.13570 4.17234 4.28045 4.30311 4.33491 4.44475 4.49008 4.63205 4.63380 4.72372 4.75548 4.82170 4.83338 4.87139 5.07615 5.09187 5.19295 5.23436 5.28848 5.38359 5.41199 5.44019 5.75353 5.82960 5.95765 6.24954 6.31957 6.40363 6.46574 6.55643 6.80225 7.36601 7.66486 8.97375 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013857 B = 0.003013 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.103152 B = 9292.098980 C =10568.051915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.168 4.168 4 O -0.351 6.351 5 C 0.474 3.526 6 O -0.524 6.524 7 C 0.126 3.874 8 N -0.725 5.725 9 C 0.521 3.479 10 O -0.549 6.549 11 C -0.111 4.111 12 C 0.074 3.926 13 H 0.011 0.989 14 C -0.560 4.560 15 H 0.040 0.960 16 C -0.023 4.023 17 N -0.941 5.941 18 Si 1.102 2.898 19 H -0.276 1.276 20 H -0.278 1.278 21 H -0.291 1.291 22 C -0.056 4.056 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.145 4.145 26 C -0.125 4.125 27 C -0.152 4.152 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.415 0.585 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.258 0.742 41 H 0.114 0.886 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.135 0.865 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 8.638 -15.974 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 C -0.226 4.226 4 O -0.267 6.267 5 C 0.317 3.683 6 O -0.414 6.414 7 C 0.001 3.999 8 N -0.385 5.385 9 C 0.309 3.691 10 O -0.424 6.424 11 C -0.151 4.151 12 C 0.055 3.945 13 H 0.030 0.970 14 C -0.598 4.598 15 H 0.058 0.942 16 C -0.222 4.222 17 N -0.580 5.580 18 Si 0.927 3.073 19 H -0.202 1.202 20 H -0.203 1.203 21 H -0.217 1.217 22 C -0.057 4.057 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.163 4.163 26 C -0.143 4.143 27 C -0.171 4.171 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.253 0.747 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.082 8.776 -13.860 18.288 hybrid contribution -0.150 -0.272 -1.737 1.765 sum -8.231 8.504 -15.597 19.579 Atomic orbital electron populations 1.21926 0.90085 1.03660 1.04574 1.23135 0.96711 0.92978 0.85606 1.22230 1.01108 0.94629 1.04598 1.86560 1.35232 1.62262 1.42675 1.23405 0.79632 0.76061 0.89190 1.90632 1.59903 1.59610 1.31225 1.20629 0.86980 0.98818 0.93428 1.45779 1.20931 1.55267 1.16473 1.20934 0.86571 0.77596 0.84038 1.90748 1.69961 1.59740 1.21999 1.21598 0.93070 1.00752 0.99714 1.17704 0.90288 0.94144 0.92379 0.97037 1.21823 1.48149 0.97197 0.92626 0.94166 1.26726 0.93921 0.99882 1.01648 1.70816 1.46888 1.02984 1.37264 0.83123 0.76916 0.73506 0.73749 1.20201 1.20340 1.21698 1.20628 0.97871 0.93497 0.93683 1.21016 0.93249 0.99782 1.00124 1.21407 0.97851 0.95000 1.00051 1.21309 0.98781 0.94334 1.01853 1.21301 0.93178 1.00393 0.99450 1.21134 0.98971 0.94415 1.02534 0.90886 0.87979 0.91758 0.90327 0.93653 0.88332 0.90879 0.86713 0.87116 0.74690 0.88489 0.88821 0.93077 0.86785 0.84016 0.83614 0.84719 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.57 71.98 0.69 -0.86 16 2 C 0.07 1.13 3.18 30.60 0.10 1.23 16 3 C -0.17 -2.35 9.55 71.98 0.69 -1.67 16 4 O -0.35 -7.47 9.88 -51.47 -0.51 -7.98 16 5 C 0.47 11.47 8.00 71.24 0.57 12.04 16 6 O -0.52 -14.39 14.89 21.97 0.33 -14.06 16 7 C 0.13 3.33 6.27 85.63 0.54 3.86 16 8 N -0.73 -22.05 5.53 -466.78 -2.58 -24.63 16 9 C 0.52 20.81 7.58 87.66 0.66 21.48 16 10 O -0.55 -27.52 15.02 -3.04 -0.05 -27.57 16 11 C -0.11 -4.35 4.94 29.85 0.15 -4.20 16 12 C 0.07 3.64 1.31 -12.29 -0.02 3.62 16 13 H 0.01 0.65 6.23 -2.39 -0.01 0.63 16 14 C -0.56 -31.02 6.40 25.60 0.16 -30.86 16 15 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 16 C -0.02 -1.36 5.45 84.65 0.46 -0.90 16 17 N -0.94 -59.52 13.63 21.45 0.29 -59.23 16 18 Si 1.10 53.74 29.91 68.60 2.05 55.80 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 22 C -0.06 -2.52 4.77 -19.87 -0.09 -2.61 16 23 C -0.12 -4.92 8.88 22.27 0.20 -4.72 16 24 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 25 C -0.14 -4.52 10.05 22.27 0.22 -4.29 16 26 C -0.13 -4.37 10.05 22.27 0.22 -4.14 16 27 C -0.15 -6.45 9.67 22.27 0.22 -6.24 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 1.41 7.16 -2.38 -0.02 1.39 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.41 11.08 7.44 -92.71 -0.69 10.39 16 38 H 0.10 3.47 7.86 -2.39 -0.02 3.45 16 39 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.26 16.45 6.68 -92.71 -0.62 15.83 16 41 H 0.11 4.44 7.80 -2.91 -0.02 4.41 16 42 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 43 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 44 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 45 H 0.10 4.23 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -75.50 382.29 4.97 -70.53 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.45 Total: 29.30 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 4.99 Total: -22.17 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -2.29 Total: -83.85 kcal Atomic # 8 Polarization: -49.38 SS G_CDS: -0.23 Total: -49.61 kcal Atomic # 14 Polarization: 53.74 SS G_CDS: 2.05 Total: 55.80 kcal Total: -75.50 4.97 -70.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793433133.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.560 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds