Wall clock time and date at job start Tue Mar 31 2020 12:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46648 * 2 1 4 4 N 1.46499 * 109.47027 * 119.99767 * 2 1 3 5 5 C 1.34774 * 119.99836 * 155.00482 * 4 2 1 6 6 O 1.21282 * 120.00181 * 0.02562 * 5 4 2 7 7 C 1.50709 * 120.00011 * 179.97438 * 5 4 2 8 8 O 1.45196 * 109.46902 * 179.97438 * 7 5 4 9 9 C 1.34234 * 116.99852 * 179.97438 * 8 7 5 10 10 O 1.20829 * 119.99812 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00163 * 180.27896 * 9 8 7 12 12 C 1.52996 * 109.47035 * 179.72827 * 11 9 8 13 13 H 1.09003 * 109.46848 * 305.36488 * 12 11 9 14 14 C 1.50697 * 109.47591 * 65.36597 * 12 11 9 15 15 H 1.08004 * 120.00086 * 34.61691 * 14 12 11 16 16 C 1.37878 * 120.00314 * 214.62541 * 14 12 11 17 17 N 1.31510 * 120.00128 * 186.44867 * 16 14 12 18 18 Si 1.86796 * 119.99875 * 6.44057 * 16 14 12 19 19 H 1.48498 * 109.47443 * 85.00861 * 18 16 14 20 20 H 1.48504 * 109.47188 * 205.01377 * 18 16 14 21 21 H 1.48504 * 109.47104 * 325.01043 * 18 16 14 22 22 C 1.50700 * 109.47272 * 185.36624 * 12 11 9 23 23 C 1.38237 * 119.99782 * 296.36399 * 22 12 11 24 24 C 1.38232 * 119.99821 * 179.78793 * 23 22 12 25 25 C 1.38238 * 120.00188 * 0.43598 * 24 23 22 26 26 C 1.38234 * 119.99909 * 359.80852 * 25 24 23 27 27 C 1.38234 * 119.99980 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47579 * 299.99724 * 1 2 3 29 29 H 1.08994 * 109.47134 * 60.00693 * 1 2 3 30 30 H 1.09000 * 109.46771 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47346 * 239.99864 * 2 1 3 32 32 H 1.09002 * 109.47358 * 59.99871 * 3 2 1 33 33 H 1.09008 * 109.46667 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47292 * 299.99607 * 3 2 1 35 35 H 0.96996 * 120.00382 * 335.00089 * 4 2 1 36 36 H 1.08998 * 109.46846 * 59.99981 * 7 5 4 37 37 H 1.09000 * 109.46938 * 299.99707 * 7 5 4 38 38 H 1.09001 * 109.46669 * 299.72513 * 11 9 8 39 39 H 1.08999 * 109.47058 * 59.72760 * 11 9 8 40 40 H 0.97007 * 120.00368 * 179.97438 * 17 16 14 41 41 H 1.07998 * 119.99820 * 359.97438 * 23 22 12 42 42 H 1.08001 * 120.00069 * 180.27214 * 24 23 22 43 43 H 1.07995 * 120.00279 * 179.84161 * 25 24 23 44 44 H 1.07999 * 119.99985 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00359 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2590 1.1944 6 8 3.9359 -1.1985 0.2028 7 6 3.7429 -1.9689 2.4252 8 8 5.0737 -2.4918 2.1727 9 6 5.6680 -3.1561 3.1764 10 8 5.0949 -3.2964 4.2308 11 6 7.0522 -3.7221 2.9900 12 6 7.4957 -4.4192 4.2777 13 1 7.4135 -3.7247 5.1137 14 6 6.6150 -5.6157 4.5302 15 1 6.2372 -6.1931 3.6993 16 6 6.2914 -5.9732 5.8219 17 7 5.6301 -7.0869 6.0499 18 14 6.7923 -4.8758 7.2481 19 1 5.7717 -3.8139 7.4379 20 1 6.8963 -5.6894 8.4860 21 1 8.1073 -4.2515 6.9542 22 6 8.9270 -4.8697 4.1377 23 6 9.2641 -5.8156 3.1876 24 6 10.5777 -6.2255 3.0563 25 6 11.5527 -5.6963 3.8810 26 6 11.2148 -4.7542 4.8344 27 6 9.9020 -4.3409 4.9628 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.4622 -0.7386 1.9895 36 1 3.0704 -2.7909 2.6705 37 1 3.7797 -1.2682 3.2592 38 1 7.0432 -4.4420 2.1716 39 1 7.7463 -2.9148 2.7563 40 1 5.4027 -7.3387 6.9587 41 1 8.5017 -6.2320 2.5460 42 1 10.8418 -6.9613 2.3111 43 1 12.5785 -6.0185 3.7801 44 1 11.9765 -4.3410 5.4790 45 1 9.6378 -3.6051 5.7080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795981921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:55 Heat of formation + Delta-G solvation = -106.065635 kcal Electronic energy + Delta-G solvation = -26279.558123 eV Core-core repulsion = 22454.894479 eV Total energy + Delta-G solvation = -3824.663644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.28595 -39.47123 -38.54550 -36.38144 -35.73144 -34.16848 -32.06673 -31.75639 -30.21911 -29.46588 -28.15980 -27.55564 -25.99837 -22.88922 -22.02677 -21.80375 -20.78532 -20.59033 -19.24675 -17.45128 -17.10358 -17.04666 -16.43159 -16.31868 -15.93021 -15.36722 -15.00086 -14.56371 -14.40969 -14.17528 -13.90157 -13.62687 -13.41816 -12.94741 -12.73165 -12.71270 -12.66309 -12.47377 -12.42787 -12.18439 -11.92212 -11.84147 -11.69022 -11.29051 -11.14489 -10.83895 -10.58744 -10.41660 -10.36455 -10.01406 -9.90746 -9.71211 -9.60410 -9.35103 -9.20832 -8.48153 -8.21166 -7.85381 -6.06107 -4.04528 2.09156 2.12414 2.48123 2.49340 2.97857 3.37529 3.41820 3.45572 3.53059 4.44169 4.47980 4.54350 4.65756 4.72952 4.91434 5.13312 5.20373 5.22941 5.25620 5.35310 5.44027 5.51521 5.54445 5.56405 5.60138 5.68031 5.77559 5.88842 5.92772 5.94325 6.05962 6.23262 6.24945 6.29488 6.45824 6.66339 6.78067 6.92043 6.94157 7.14147 7.24665 7.25331 7.51730 7.66469 7.78115 8.05220 8.43453 8.50206 8.93074 9.58024 11.06401 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.003017 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.928848 B = 9279.617534 C =10324.504002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.137 3.863 3 C -0.165 4.165 4 N -0.728 5.728 5 C 0.518 3.482 6 O -0.517 6.517 7 C 0.047 3.953 8 O -0.347 6.347 9 C 0.461 3.539 10 O -0.472 6.472 11 C -0.088 4.088 12 C 0.053 3.947 13 H 0.051 0.949 14 C -0.497 4.497 15 H 0.074 0.926 16 C 0.087 3.913 17 N -0.895 5.895 18 Si 0.871 3.129 19 H -0.273 1.273 20 H -0.294 1.294 21 H -0.259 1.259 22 C -0.040 4.040 23 C -0.100 4.100 24 C -0.127 4.127 25 C -0.147 4.147 26 C -0.126 4.126 27 C -0.134 4.134 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.402 0.598 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 13.477 -8.816 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 C -0.223 4.223 4 N -0.383 5.383 5 C 0.303 3.697 6 O -0.391 6.391 7 C -0.031 4.031 8 O -0.264 6.264 9 C 0.302 3.698 10 O -0.356 6.356 11 C -0.126 4.126 12 C 0.034 3.966 13 H 0.069 0.931 14 C -0.534 4.534 15 H 0.092 0.908 16 C -0.116 4.116 17 N -0.532 5.532 18 Si 0.699 3.301 19 H -0.198 1.198 20 H -0.221 1.221 21 H -0.184 1.184 22 C -0.040 4.040 23 C -0.118 4.118 24 C -0.145 4.145 25 C -0.165 4.165 26 C -0.145 4.145 27 C -0.153 4.153 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.236 0.764 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.049 13.353 -9.068 16.641 hybrid contribution -0.295 0.330 1.517 1.580 sum -4.344 13.683 -7.551 16.221 Atomic orbital electron populations 1.22081 0.93978 1.02820 1.02956 1.20945 0.93980 0.93012 0.88726 1.22203 1.02349 0.95708 1.02061 1.45979 1.17677 1.57493 1.17193 1.20277 0.81508 0.78581 0.89300 1.90733 1.55650 1.58179 1.34526 1.22489 0.85124 0.99621 0.95844 1.86605 1.29046 1.66748 1.44031 1.24055 0.89301 0.75040 0.81406 1.90705 1.64524 1.52945 1.27395 1.21499 0.88116 1.00132 1.02865 1.18196 0.89079 0.96888 0.92440 0.93102 1.20635 1.28537 1.10318 0.93937 0.90825 1.24891 0.93833 0.94259 0.98612 1.69895 1.39960 1.22362 1.21022 0.86951 0.79934 0.81333 0.81861 1.19816 1.22075 1.18399 1.20598 0.95985 0.94390 0.93076 1.20978 0.95329 0.96718 0.98781 1.21057 0.93624 1.00134 0.99659 1.20878 0.98612 0.99264 0.97783 1.20961 0.96131 0.98575 0.98784 1.21136 0.92777 1.01179 1.00161 0.91982 0.90866 0.91802 0.89281 0.92445 0.91916 0.91593 0.76406 0.88229 0.88606 0.88319 0.89834 0.92706 0.86129 0.87088 0.87369 0.87322 0.86967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.38 37.16 0.35 -0.55 16 2 C 0.14 1.15 3.18 -67.93 -0.22 0.93 16 3 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 4 N -0.73 -6.78 5.08 -53.80 -0.27 -7.05 16 5 C 0.52 6.96 7.87 -10.98 -0.09 6.87 16 6 O -0.52 -8.99 16.16 -14.11 -0.23 -9.22 16 7 C 0.05 0.67 5.94 36.01 0.21 0.88 16 8 O -0.35 -6.25 9.75 -45.91 -0.45 -6.69 16 9 C 0.46 9.25 7.71 36.01 0.28 9.53 16 10 O -0.47 -10.92 14.75 -18.75 -0.28 -11.19 16 11 C -0.09 -1.69 5.05 -27.89 -0.14 -1.83 16 12 C 0.05 1.19 1.28 -92.93 -0.12 1.07 16 13 H 0.05 1.19 4.79 -51.93 -0.25 0.94 16 14 C -0.50 -13.36 6.94 -34.44 -0.24 -13.59 16 15 H 0.07 2.14 8.06 -52.48 -0.42 1.72 16 16 C 0.09 2.49 5.47 -17.82 -0.10 2.39 16 17 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 18 Si 0.87 22.01 27.04 -169.99 -4.60 17.41 16 19 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 21 H -0.26 -6.07 5.15 56.52 0.29 -5.77 16 22 C -0.04 -0.83 4.77 -104.62 -0.50 -1.33 16 23 C -0.10 -1.94 8.87 -39.58 -0.35 -2.29 16 24 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 25 C -0.15 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 27 C -0.13 -2.61 9.13 -39.58 -0.36 -2.97 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.91 7.58 -51.93 -0.39 0.51 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.40 2.62 8.60 -40.82 -0.35 2.27 16 36 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 37 H 0.10 1.18 8.13 -51.93 -0.42 0.76 16 38 H 0.10 1.80 7.80 -51.93 -0.41 1.39 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.12 2.31 7.77 -52.49 -0.41 1.90 16 42 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 45 H 0.11 2.12 6.95 -52.49 -0.37 1.76 16 LS Contribution 378.62 15.07 5.71 5.71 Total: -1.00 -34.72 378.62 -8.37 -43.08 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.91 Total: 4.24 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.11 Total: -9.74 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.50 Total: -33.59 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.95 Total: -27.11 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.60 Total: 17.41 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.72 -8.37 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795981921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.981 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds