Wall clock time and date at job start Tue Mar 31 2020 12:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46648 * 2 1 4 4 N 1.46499 * 109.47027 * 119.99767 * 2 1 3 5 5 C 1.34774 * 119.99836 * 155.00482 * 4 2 1 6 6 O 1.21282 * 120.00181 * 0.02562 * 5 4 2 7 7 C 1.50709 * 120.00011 * 179.97438 * 5 4 2 8 8 O 1.45196 * 109.46902 * 179.97438 * 7 5 4 9 9 C 1.34234 * 116.99852 * 179.97438 * 8 7 5 10 10 O 1.20829 * 119.99812 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00163 * 180.27896 * 9 8 7 12 12 C 1.52996 * 109.47035 * 179.72827 * 11 9 8 13 13 H 1.09003 * 109.46848 * 305.36488 * 12 11 9 14 14 C 1.50697 * 109.47591 * 65.36597 * 12 11 9 15 15 H 1.08004 * 120.00086 * 34.61691 * 14 12 11 16 16 C 1.37878 * 120.00314 * 214.62541 * 14 12 11 17 17 N 1.31510 * 120.00128 * 186.44867 * 16 14 12 18 18 Si 1.86796 * 119.99875 * 6.44057 * 16 14 12 19 19 H 1.48498 * 109.47443 * 85.00861 * 18 16 14 20 20 H 1.48504 * 109.47188 * 205.01377 * 18 16 14 21 21 H 1.48504 * 109.47104 * 325.01043 * 18 16 14 22 22 C 1.50700 * 109.47272 * 185.36624 * 12 11 9 23 23 C 1.38237 * 119.99782 * 296.36399 * 22 12 11 24 24 C 1.38232 * 119.99821 * 179.78793 * 23 22 12 25 25 C 1.38238 * 120.00188 * 0.43598 * 24 23 22 26 26 C 1.38234 * 119.99909 * 359.80852 * 25 24 23 27 27 C 1.38234 * 119.99980 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47579 * 299.99724 * 1 2 3 29 29 H 1.08994 * 109.47134 * 60.00693 * 1 2 3 30 30 H 1.09000 * 109.46771 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47346 * 239.99864 * 2 1 3 32 32 H 1.09002 * 109.47358 * 59.99871 * 3 2 1 33 33 H 1.09008 * 109.46667 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47292 * 299.99607 * 3 2 1 35 35 H 0.96996 * 120.00382 * 335.00089 * 4 2 1 36 36 H 1.08998 * 109.46846 * 59.99981 * 7 5 4 37 37 H 1.09000 * 109.46938 * 299.99707 * 7 5 4 38 38 H 1.09001 * 109.46669 * 299.72513 * 11 9 8 39 39 H 1.08999 * 109.47058 * 59.72760 * 11 9 8 40 40 H 0.97007 * 120.00368 * 179.97438 * 17 16 14 41 41 H 1.07998 * 119.99820 * 359.97438 * 23 22 12 42 42 H 1.08001 * 120.00069 * 180.27214 * 24 23 22 43 43 H 1.07995 * 120.00279 * 179.84161 * 25 24 23 44 44 H 1.07999 * 119.99985 * 179.97438 * 26 25 24 45 45 H 1.08000 * 120.00359 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.2403 -1.2590 1.1944 6 8 3.9359 -1.1985 0.2028 7 6 3.7429 -1.9689 2.4252 8 8 5.0737 -2.4918 2.1727 9 6 5.6680 -3.1561 3.1764 10 8 5.0949 -3.2964 4.2308 11 6 7.0522 -3.7221 2.9900 12 6 7.4957 -4.4192 4.2777 13 1 7.4135 -3.7247 5.1137 14 6 6.6150 -5.6157 4.5302 15 1 6.2372 -6.1931 3.6993 16 6 6.2914 -5.9732 5.8219 17 7 5.6301 -7.0869 6.0499 18 14 6.7923 -4.8758 7.2481 19 1 5.7717 -3.8139 7.4379 20 1 6.8963 -5.6894 8.4860 21 1 8.1073 -4.2515 6.9542 22 6 8.9270 -4.8697 4.1377 23 6 9.2641 -5.8156 3.1876 24 6 10.5777 -6.2255 3.0563 25 6 11.5527 -5.6963 3.8810 26 6 11.2148 -4.7542 4.8344 27 6 9.9020 -4.3409 4.9628 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.4622 -0.7386 1.9895 36 1 3.0704 -2.7909 2.6705 37 1 3.7797 -1.2682 3.2592 38 1 7.0432 -4.4420 2.1716 39 1 7.7463 -2.9148 2.7563 40 1 5.4027 -7.3387 6.9587 41 1 8.5017 -6.2320 2.5460 42 1 10.8418 -6.9613 2.3111 43 1 12.5785 -6.0185 3.7801 44 1 11.9765 -4.3410 5.4790 45 1 9.6378 -3.6051 5.7080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795981921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:55 Heat of formation + Delta-G solvation = -127.264273 kcal Electronic energy + Delta-G solvation = -26280.477365 eV Core-core repulsion = 22454.894479 eV Total energy + Delta-G solvation = -3825.582886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66720 -40.71725 -39.97256 -37.64791 -36.88514 -35.90115 -33.79894 -32.95014 -31.60723 -30.86009 -29.42316 -28.10970 -27.81345 -24.56618 -23.35552 -22.83397 -22.05410 -21.63874 -20.88121 -19.08254 -18.80610 -18.31198 -17.72767 -17.60379 -17.19254 -16.72921 -16.27465 -16.13033 -15.71141 -15.42290 -15.16871 -14.93046 -14.73741 -14.47989 -14.13315 -13.97763 -13.82359 -13.72621 -13.51155 -13.30107 -13.18920 -13.06280 -12.90567 -12.72782 -12.32915 -12.14317 -11.94852 -11.93394 -11.83650 -11.79318 -11.54604 -11.35524 -11.12387 -10.98381 -10.61095 -10.24044 -9.61181 -9.32692 -8.24225 -6.23227 0.68627 0.72127 1.30756 1.34664 1.36568 1.39875 1.41731 1.43747 2.37683 2.40567 3.06345 3.23250 3.56177 3.92810 3.96327 4.01981 4.09041 4.10168 4.14533 4.25589 4.30218 4.32167 4.38564 4.47923 4.59487 4.71463 4.74340 4.76649 4.84708 4.91827 4.95686 4.99325 5.14483 5.24923 5.31285 5.33963 5.37336 5.41922 5.47325 5.63137 5.77494 5.81830 6.01175 6.31082 6.35776 6.38251 6.76470 6.92424 7.08389 7.41541 8.92200 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015736 B = 0.003017 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.928848 B = 9279.617534 C =10324.504002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.132 3.868 3 C -0.161 4.161 4 N -0.708 5.708 5 C 0.522 3.478 6 O -0.562 6.562 7 C 0.039 3.961 8 O -0.352 6.352 9 C 0.465 3.535 10 O -0.510 6.510 11 C -0.088 4.088 12 C 0.057 3.943 13 H 0.042 0.958 14 C -0.479 4.479 15 H 0.036 0.964 16 C 0.029 3.971 17 N -0.949 5.949 18 Si 0.920 3.080 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.230 1.230 22 C -0.065 4.065 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.139 4.139 26 C -0.124 4.124 27 C -0.150 4.150 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.083 0.917 35 H 0.418 0.582 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.261 0.739 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 15.281 -8.978 17.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.028 3.972 3 C -0.219 4.219 4 N -0.363 5.363 5 C 0.307 3.693 6 O -0.441 6.441 7 C -0.038 4.038 8 O -0.269 6.269 9 C 0.309 3.691 10 O -0.396 6.396 11 C -0.126 4.126 12 C 0.038 3.962 13 H 0.060 0.940 14 C -0.517 4.517 15 H 0.054 0.946 16 C -0.169 4.169 17 N -0.589 5.589 18 Si 0.746 3.254 19 H -0.205 1.205 20 H -0.224 1.224 21 H -0.153 1.153 22 C -0.066 4.066 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.156 4.156 26 C -0.142 4.142 27 C -0.168 4.168 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.255 0.745 36 H 0.125 0.875 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.134 0.866 40 H 0.069 0.931 41 H 0.127 0.873 42 H 0.156 0.844 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.609 15.200 -9.248 17.982 hybrid contribution -0.749 -0.196 1.401 1.601 sum -3.359 15.004 -7.847 17.262 Atomic orbital electron populations 1.22038 0.91249 1.03244 1.04459 1.21125 0.95993 0.92854 0.87230 1.22168 1.00505 0.95546 1.03665 1.45904 1.16240 1.55847 1.18308 1.20176 0.82334 0.78508 0.88269 1.90716 1.57216 1.60270 1.35855 1.22822 0.83412 1.00385 0.97144 1.86563 1.30903 1.66278 1.43169 1.24159 0.89464 0.74459 0.81054 1.90687 1.65489 1.54604 1.28830 1.21462 0.88555 1.01112 1.01439 1.18063 0.89769 0.94836 0.93568 0.94011 1.20818 1.27924 1.10565 0.92391 0.94552 1.25616 0.94538 0.95405 1.01300 1.70035 1.42998 1.24665 1.21246 0.86154 0.80833 0.79540 0.78835 1.20479 1.22421 1.15313 1.20389 0.95143 0.96030 0.94992 1.21034 0.96604 0.97158 0.98998 1.21393 0.92617 1.00199 1.00214 1.21350 1.00182 0.97850 0.96260 1.21347 0.95701 0.98124 0.99029 1.21272 0.93801 1.01693 1.00020 0.90418 0.89418 0.91932 0.91464 0.91036 0.94692 0.89836 0.74495 0.87537 0.86561 0.87799 0.86602 0.93055 0.87278 0.84406 0.83578 0.84069 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.38 71.98 0.68 -0.67 16 2 C 0.13 2.05 3.18 44.99 0.14 2.20 16 3 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 4 N -0.71 -12.48 5.08 -442.52 -2.25 -14.73 16 5 C 0.52 13.99 7.87 87.66 0.69 14.68 16 6 O -0.56 -20.01 16.16 15.76 0.25 -19.75 16 7 C 0.04 1.11 5.94 71.24 0.42 1.54 16 8 O -0.35 -12.79 9.75 -45.10 -0.44 -13.23 16 9 C 0.47 18.93 7.71 71.24 0.55 19.48 16 10 O -0.51 -24.01 14.75 21.96 0.32 -23.68 16 11 C -0.09 -3.39 5.05 29.85 0.15 -3.23 16 12 C 0.06 2.55 1.28 -12.29 -0.02 2.54 16 13 H 0.04 1.95 4.79 -2.39 -0.01 1.93 16 14 C -0.48 -26.65 6.94 25.60 0.18 -26.47 16 15 H 0.04 2.23 8.06 -2.91 -0.02 2.21 16 16 C 0.03 1.68 5.47 84.66 0.46 2.15 16 17 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 18 Si 0.92 46.04 27.04 68.60 1.85 47.89 16 19 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 20 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 21 H -0.23 -10.27 5.15 99.48 0.51 -9.75 16 22 C -0.07 -2.65 4.77 -19.86 -0.09 -2.75 16 23 C -0.12 -4.57 8.87 22.27 0.20 -4.37 16 24 C -0.13 -3.96 10.05 22.27 0.22 -3.73 16 25 C -0.14 -3.90 10.05 22.27 0.22 -3.67 16 26 C -0.12 -3.74 10.05 22.27 0.22 -3.51 16 27 C -0.15 -5.47 9.13 22.27 0.20 -5.27 16 28 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 1.38 7.58 -2.39 -0.02 1.36 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.03 0.70 8.14 -2.38 -0.02 0.69 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.42 4.69 8.60 -92.71 -0.80 3.90 16 36 H 0.11 2.85 8.13 -2.39 -0.02 2.83 16 37 H 0.12 2.79 8.13 -2.39 -0.02 2.77 16 38 H 0.10 3.87 7.80 -2.39 -0.02 3.85 16 39 H 0.12 3.68 8.14 -2.39 -0.02 3.67 16 40 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 41 H 0.11 4.29 7.77 -2.91 -0.02 4.26 16 42 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 44 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 45 H 0.11 4.03 6.95 -2.91 -0.02 4.01 16 Total: -1.00 -79.06 378.62 4.96 -74.10 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.00 Total: 22.26 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 4.92 Total: -12.76 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -1.95 Total: -74.82 kcal Atomic # 8 Polarization: -56.81 SS G_CDS: 0.14 Total: -56.67 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.85 Total: 47.89 kcal Total: -79.06 4.96 -74.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795981921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.162 kcal (2) G-P(sol) polarization free energy of solvation -79.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds