Wall clock time and date at job start Tue Mar 31 2020 12:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47196 * 2 1 4 4 N 1.46501 * 109.47027 * 180.02562 * 3 2 1 5 5 C 1.34778 * 119.99527 * 179.97438 * 4 3 2 6 6 O 1.21274 * 120.00504 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99406 * 179.97438 * 5 4 3 8 8 O 1.45203 * 109.46690 * 180.02562 * 7 5 4 9 9 C 1.34236 * 117.00110 * 180.02562 * 8 7 5 10 10 O 1.20825 * 119.99323 * 359.97438 * 9 8 7 11 11 C 1.50688 * 120.00296 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47354 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47305 * 53.80117 * 12 11 9 14 14 C 1.50708 * 109.46885 * 293.80185 * 12 11 9 15 15 H 1.08000 * 119.99624 * 324.79477 * 14 12 11 16 16 C 1.37875 * 120.00085 * 144.79205 * 14 12 11 17 17 N 1.31509 * 120.00148 * 181.40791 * 16 14 12 18 18 Si 1.86808 * 119.99819 * 1.40439 * 16 14 12 19 19 H 1.48496 * 109.47120 * 267.09715 * 18 16 14 20 20 H 1.48495 * 109.46920 * 27.09863 * 18 16 14 21 21 H 1.48502 * 109.46719 * 147.09838 * 18 16 14 22 22 C 1.50699 * 109.47482 * 173.80503 * 12 11 9 23 23 C 1.38240 * 119.99980 * 66.64160 * 22 12 11 24 24 C 1.38238 * 119.99579 * 179.81083 * 23 22 12 25 25 C 1.38232 * 120.00406 * 0.39891 * 24 23 22 26 26 C 1.38237 * 119.99864 * 359.85742 * 25 24 23 27 27 C 1.38230 * 119.99847 * 246.91995 * 22 12 11 28 28 H 1.09011 * 109.46967 * 60.00259 * 1 2 3 29 29 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47566 * 300.00491 * 1 2 3 31 31 H 1.09002 * 109.47436 * 239.99739 * 2 1 3 32 32 H 1.08997 * 109.46992 * 119.99677 * 2 1 3 33 33 H 1.09002 * 109.47142 * 59.99559 * 3 2 1 34 34 H 1.09005 * 109.46708 * 299.99423 * 3 2 1 35 35 H 0.96992 * 120.00111 * 359.97438 * 4 3 2 36 36 H 1.08993 * 109.47511 * 60.00010 * 7 5 4 37 37 H 1.09005 * 109.47165 * 299.99677 * 7 5 4 38 38 H 1.08995 * 109.47706 * 59.99179 * 11 9 8 39 39 H 1.09010 * 109.47129 * 299.99285 * 11 9 8 40 40 H 0.97000 * 120.00116 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00143 * 0.02562 * 23 22 12 42 42 H 1.08003 * 119.99602 * 180.23841 * 24 23 22 43 43 H 1.07995 * 120.00043 * 179.83073 * 25 24 23 44 44 H 1.07998 * 120.00385 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00708 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0012 6 8 3.5725 3.6600 -0.0008 7 6 5.6859 2.6097 -0.0013 8 8 6.1698 3.9787 -0.0014 9 6 7.5006 4.1546 -0.0020 10 8 8.2366 3.1964 -0.0020 11 6 8.0766 5.5471 -0.0016 12 6 9.6045 5.4670 -0.0018 13 1 9.9355 4.8422 -0.8313 14 6 10.0762 4.8677 1.2980 15 1 9.5461 5.0805 2.2146 16 6 11.1844 4.0476 1.3170 17 7 11.5797 3.5024 2.4466 18 14 12.1244 3.7110 -0.2619 19 1 11.6030 2.4725 -0.8939 20 1 11.9507 4.8535 -1.1944 21 1 13.5666 3.5395 0.0477 22 6 10.1801 6.8514 -0.1547 23 6 10.0117 7.7849 0.8509 24 6 10.5431 9.0535 0.7123 25 6 11.2357 9.3912 -0.4354 26 6 11.3995 8.4593 -1.4432 27 6 10.8714 7.1894 -1.3029 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.9900 0.6025 -0.0006 36 1 6.0492 2.0954 -0.8909 37 1 6.0492 2.0963 0.8890 38 1 7.7411 6.0789 0.8887 39 1 7.7403 6.0797 -0.8913 40 1 12.3596 2.9257 2.4600 41 1 9.4680 7.5220 1.7463 42 1 10.4149 9.7816 1.4996 43 1 11.6485 10.3831 -0.5448 44 1 11.9402 8.7232 -2.3400 45 1 10.9995 6.4615 -2.0903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795983865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:58 Heat of formation + Delta-G solvation = -109.274123 kcal Electronic energy + Delta-G solvation = -25986.611176 eV Core-core repulsion = 22161.808401 eV Total energy + Delta-G solvation = -3824.802775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23768 -39.38032 -38.54624 -36.25734 -35.72655 -34.16989 -32.97545 -31.76511 -30.22514 -29.70040 -28.67938 -26.39793 -25.56514 -22.82051 -22.04378 -21.90371 -20.94347 -20.50944 -19.24345 -17.37796 -17.15449 -17.06287 -16.46843 -16.24889 -15.89739 -15.78749 -15.34888 -14.64200 -14.52395 -14.22266 -13.90143 -13.71430 -13.27509 -13.22472 -12.81354 -12.72704 -12.55192 -12.47074 -12.42163 -12.18769 -11.89099 -11.83969 -11.54980 -11.28945 -11.14377 -10.81538 -10.56875 -10.42837 -10.36030 -10.02721 -9.92440 -9.69835 -9.62163 -9.33190 -9.16674 -8.51898 -8.21119 -7.85609 -6.05345 -4.04659 2.08346 2.11596 2.47562 2.49793 2.98637 3.37582 3.42779 3.44588 3.53738 4.41618 4.47530 4.54311 4.56675 4.59750 4.83506 5.12558 5.19394 5.23446 5.23957 5.25923 5.38320 5.51126 5.54229 5.57397 5.60627 5.67455 5.71500 5.80006 5.89193 5.93501 6.05901 6.16098 6.23528 6.29199 6.46557 6.65591 6.77668 6.92321 6.94794 7.13542 7.22294 7.24748 7.51434 7.67255 7.77777 8.03615 8.44030 8.50791 8.93340 9.58342 11.07214 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.002771 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.958753 B =10101.350439 C =11149.488750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.120 3.880 4 N -0.733 5.733 5 C 0.517 3.483 6 O -0.517 6.517 7 C 0.048 3.952 8 O -0.347 6.347 9 C 0.461 3.539 10 O -0.472 6.472 11 C -0.087 4.087 12 C 0.053 3.947 13 H 0.052 0.948 14 C -0.498 4.498 15 H 0.074 0.926 16 C 0.087 3.913 17 N -0.896 5.896 18 Si 0.869 3.131 19 H -0.276 1.276 20 H -0.254 1.254 21 H -0.293 1.293 22 C -0.042 4.042 23 C -0.099 4.099 24 C -0.127 4.127 25 C -0.147 4.147 26 C -0.128 4.128 27 C -0.133 4.133 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.403 0.597 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.263 0.737 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.051 -2.609 -6.866 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.004 4.004 4 N -0.388 5.388 5 C 0.302 3.698 6 O -0.391 6.391 7 C -0.030 4.030 8 O -0.265 6.265 9 C 0.302 3.698 10 O -0.355 6.355 11 C -0.125 4.125 12 C 0.034 3.966 13 H 0.070 0.930 14 C -0.535 4.535 15 H 0.092 0.908 16 C -0.116 4.116 17 N -0.533 5.533 18 Si 0.696 3.304 19 H -0.202 1.202 20 H -0.178 1.178 21 H -0.219 1.219 22 C -0.042 4.042 23 C -0.117 4.117 24 C -0.146 4.146 25 C -0.165 4.165 26 C -0.146 4.146 27 C -0.151 4.151 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.237 0.763 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.140 0.860 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.133 -2.273 -6.770 16.733 hybrid contribution 1.051 -0.967 -0.619 1.556 sum -14.082 -3.240 -7.389 16.230 Atomic orbital electron populations 1.21678 0.94480 1.02188 1.02413 1.21748 0.97045 0.95758 1.02909 1.21415 0.79041 0.97244 1.02670 1.45863 1.07466 1.08488 1.77005 1.20275 0.89271 0.83939 0.76327 1.90737 1.69997 1.31056 1.47326 1.22477 0.91030 0.84603 1.04912 1.86605 1.26479 1.27963 1.85415 1.24050 0.78915 0.93937 0.72893 1.90707 1.59487 1.42528 1.42824 1.21485 0.98169 0.89109 1.03756 1.18208 0.88534 0.89799 1.00051 0.93029 1.20650 1.12893 1.27899 0.92011 0.90822 1.24895 0.96604 0.94384 0.95745 1.69882 1.25627 1.31819 1.26003 0.86972 0.78713 0.79646 0.85038 1.20212 1.17792 1.21949 1.20619 0.95624 0.96051 0.91947 1.21003 0.99652 0.92329 0.98670 1.21064 0.99180 0.96881 0.97426 1.20879 1.01715 0.98908 0.94970 1.20963 1.00805 0.94088 0.98722 1.21134 1.00021 0.95967 0.97992 0.92321 0.92145 0.92266 0.91203 0.91130 0.91297 0.91363 0.76309 0.88569 0.88173 0.88320 0.89845 0.92744 0.86032 0.87088 0.87380 0.87338 0.86996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.39 16 2 C -0.14 -0.76 6.05 -26.73 -0.16 -0.92 16 3 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 4 N -0.73 -6.90 5.56 -60.29 -0.33 -7.24 16 5 C 0.52 7.06 7.91 -10.98 -0.09 6.97 16 6 O -0.52 -9.20 16.50 -14.10 -0.23 -9.43 16 7 C 0.05 0.68 5.94 36.01 0.21 0.89 16 8 O -0.35 -6.30 9.76 -45.92 -0.45 -6.75 16 9 C 0.46 9.29 7.71 36.00 0.28 9.57 16 10 O -0.47 -10.97 14.77 -18.75 -0.28 -11.24 16 11 C -0.09 -1.67 5.08 -27.89 -0.14 -1.82 16 12 C 0.05 1.19 1.17 -92.92 -0.11 1.08 16 13 H 0.05 1.21 4.94 -51.93 -0.26 0.95 16 14 C -0.50 -13.32 6.88 -34.44 -0.24 -13.56 16 15 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 16 C 0.09 2.48 5.47 -17.82 -0.10 2.38 16 17 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 18 Si 0.87 21.85 27.00 -169.99 -4.59 17.26 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.25 -5.88 4.72 56.52 0.27 -5.61 16 21 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 22 C -0.04 -0.86 4.65 -104.62 -0.49 -1.35 16 23 C -0.10 -1.91 8.93 -39.58 -0.35 -2.26 16 24 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 25 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 26 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 27 C -0.13 -2.55 8.69 -39.58 -0.34 -2.90 16 28 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.40 2.61 8.47 -40.82 -0.35 2.27 16 36 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 37 H 0.10 1.35 8.13 -51.93 -0.42 0.93 16 38 H 0.10 1.81 8.05 -51.93 -0.42 1.39 16 39 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 41 H 0.12 2.34 7.87 -52.49 -0.41 1.93 16 42 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.11 2.08 7.12 -52.49 -0.37 1.70 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -34.95 379.10 -8.76 -43.72 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.00 Total: 3.74 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -2.37 Total: -9.20 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.44 Total: -33.81 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.96 Total: -27.42 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.59 Total: 17.26 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.95 -8.76 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795983865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.556 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds