Wall clock time and date at job start Tue Mar 31 2020 12:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47196 * 2 1 4 4 N 1.46501 * 109.47027 * 180.02562 * 3 2 1 5 5 C 1.34778 * 119.99527 * 179.97438 * 4 3 2 6 6 O 1.21274 * 120.00504 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99406 * 179.97438 * 5 4 3 8 8 O 1.45203 * 109.46690 * 180.02562 * 7 5 4 9 9 C 1.34236 * 117.00110 * 180.02562 * 8 7 5 10 10 O 1.20825 * 119.99323 * 359.97438 * 9 8 7 11 11 C 1.50688 * 120.00296 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47354 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.47305 * 53.80117 * 12 11 9 14 14 C 1.50708 * 109.46885 * 293.80185 * 12 11 9 15 15 H 1.08000 * 119.99624 * 324.79477 * 14 12 11 16 16 C 1.37875 * 120.00085 * 144.79205 * 14 12 11 17 17 N 1.31509 * 120.00148 * 181.40791 * 16 14 12 18 18 Si 1.86808 * 119.99819 * 1.40439 * 16 14 12 19 19 H 1.48496 * 109.47120 * 267.09715 * 18 16 14 20 20 H 1.48495 * 109.46920 * 27.09863 * 18 16 14 21 21 H 1.48502 * 109.46719 * 147.09838 * 18 16 14 22 22 C 1.50699 * 109.47482 * 173.80503 * 12 11 9 23 23 C 1.38240 * 119.99980 * 66.64160 * 22 12 11 24 24 C 1.38238 * 119.99579 * 179.81083 * 23 22 12 25 25 C 1.38232 * 120.00406 * 0.39891 * 24 23 22 26 26 C 1.38237 * 119.99864 * 359.85742 * 25 24 23 27 27 C 1.38230 * 119.99847 * 246.91995 * 22 12 11 28 28 H 1.09011 * 109.46967 * 60.00259 * 1 2 3 29 29 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47566 * 300.00491 * 1 2 3 31 31 H 1.09002 * 109.47436 * 239.99739 * 2 1 3 32 32 H 1.08997 * 109.46992 * 119.99677 * 2 1 3 33 33 H 1.09002 * 109.47142 * 59.99559 * 3 2 1 34 34 H 1.09005 * 109.46708 * 299.99423 * 3 2 1 35 35 H 0.96992 * 120.00111 * 359.97438 * 4 3 2 36 36 H 1.08993 * 109.47511 * 60.00010 * 7 5 4 37 37 H 1.09005 * 109.47165 * 299.99677 * 7 5 4 38 38 H 1.08995 * 109.47706 * 59.99179 * 11 9 8 39 39 H 1.09010 * 109.47129 * 299.99285 * 11 9 8 40 40 H 0.97000 * 120.00116 * 180.02562 * 17 16 14 41 41 H 1.08000 * 120.00143 * 0.02562 * 23 22 12 42 42 H 1.08003 * 119.99602 * 180.23841 * 24 23 22 43 43 H 1.07995 * 120.00043 * 179.83073 * 25 24 23 44 44 H 1.07998 * 120.00385 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.00708 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1788 2.6097 -0.0012 6 8 3.5725 3.6600 -0.0008 7 6 5.6859 2.6097 -0.0013 8 8 6.1698 3.9787 -0.0014 9 6 7.5006 4.1546 -0.0020 10 8 8.2366 3.1964 -0.0020 11 6 8.0766 5.5471 -0.0016 12 6 9.6045 5.4670 -0.0018 13 1 9.9355 4.8422 -0.8313 14 6 10.0762 4.8677 1.2980 15 1 9.5461 5.0805 2.2146 16 6 11.1844 4.0476 1.3170 17 7 11.5797 3.5024 2.4466 18 14 12.1244 3.7110 -0.2619 19 1 11.6030 2.4725 -0.8939 20 1 11.9507 4.8535 -1.1944 21 1 13.5666 3.5395 0.0477 22 6 10.1801 6.8514 -0.1547 23 6 10.0117 7.7849 0.8509 24 6 10.5431 9.0535 0.7123 25 6 11.2357 9.3912 -0.4354 26 6 11.3995 8.4593 -1.4432 27 6 10.8714 7.1894 -1.3029 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 3.9900 0.6025 -0.0006 36 1 6.0492 2.0954 -0.8909 37 1 6.0492 2.0963 0.8890 38 1 7.7411 6.0789 0.8887 39 1 7.7403 6.0797 -0.8913 40 1 12.3596 2.9257 2.4600 41 1 9.4680 7.5220 1.7463 42 1 10.4149 9.7816 1.4996 43 1 11.6485 10.3831 -0.5448 44 1 11.9402 8.7232 -2.3400 45 1 10.9995 6.4615 -2.0903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795983865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:57 Heat of formation + Delta-G solvation = -130.676543 kcal Electronic energy + Delta-G solvation = -25987.539255 eV Core-core repulsion = 22161.808401 eV Total energy + Delta-G solvation = -3825.730853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.65483 -40.63943 -39.96252 -37.58045 -36.76447 -35.89874 -33.80705 -33.71081 -31.60019 -31.02713 -29.92391 -28.01578 -26.57482 -24.48844 -23.31903 -22.63076 -22.28449 -21.65134 -20.87812 -19.06128 -18.77572 -18.35036 -17.76921 -17.52666 -17.11246 -16.72284 -16.67966 -16.23695 -15.78390 -15.58925 -15.40930 -14.93649 -14.72837 -14.44246 -14.12121 -13.93766 -13.88096 -13.72773 -13.60972 -13.34509 -13.28525 -12.95562 -12.92606 -12.67440 -12.11496 -12.05554 -11.92394 -11.81525 -11.80370 -11.76328 -11.55031 -11.37350 -11.10259 -11.00836 -10.64437 -10.24284 -9.59871 -9.31848 -8.23066 -6.23069 0.69086 0.72542 1.30041 1.35637 1.36893 1.38219 1.40917 1.45764 2.37169 2.41362 3.07868 3.23018 3.56839 3.89646 3.96113 4.01376 4.08141 4.10128 4.11578 4.26082 4.32796 4.33761 4.39511 4.48482 4.60386 4.65283 4.72307 4.77739 4.85064 4.85815 4.96394 5.14743 5.14972 5.23486 5.24457 5.34564 5.38318 5.42242 5.45241 5.63703 5.78180 5.82791 6.02216 6.31974 6.34466 6.36778 6.77339 6.92438 7.04932 7.42180 8.93362 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.002771 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.958753 B =10101.350439 C =11149.488750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.116 3.884 4 N -0.712 5.712 5 C 0.520 3.480 6 O -0.564 6.564 7 C 0.040 3.960 8 O -0.353 6.353 9 C 0.466 3.534 10 O -0.510 6.510 11 C -0.087 4.087 12 C 0.057 3.943 13 H 0.042 0.958 14 C -0.479 4.479 15 H 0.036 0.964 16 C 0.026 3.974 17 N -0.950 5.950 18 Si 0.919 3.081 19 H -0.283 1.283 20 H -0.222 1.222 21 H -0.297 1.297 22 C -0.066 4.066 23 C -0.119 4.119 24 C -0.127 4.127 25 C -0.138 4.138 26 C -0.125 4.125 27 C -0.147 4.147 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.419 0.581 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.260 0.740 41 H 0.108 0.892 42 H 0.137 0.863 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.299 -1.447 -9.052 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.007 4.007 4 N -0.366 5.366 5 C 0.306 3.694 6 O -0.442 6.442 7 C -0.037 4.037 8 O -0.270 6.270 9 C 0.309 3.691 10 O -0.396 6.396 11 C -0.125 4.125 12 C 0.038 3.962 13 H 0.061 0.939 14 C -0.516 4.516 15 H 0.054 0.946 16 C -0.171 4.171 17 N -0.591 5.591 18 Si 0.745 3.255 19 H -0.209 1.209 20 H -0.145 1.145 21 H -0.224 1.224 22 C -0.067 4.067 23 C -0.137 4.137 24 C -0.145 4.145 25 C -0.156 4.156 26 C -0.143 4.143 27 C -0.165 4.165 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.257 0.743 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.135 0.865 40 H 0.069 0.931 41 H 0.126 0.874 42 H 0.155 0.845 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.420 -1.128 -8.979 17.880 hybrid contribution 0.975 -1.261 0.090 1.597 sum -14.446 -2.390 -8.889 17.129 Atomic orbital electron populations 1.21695 0.93974 1.02885 1.02289 1.21708 0.97348 0.93610 1.03867 1.21562 0.77961 0.99246 1.01895 1.45758 1.08118 1.07976 1.74780 1.20190 0.88867 0.84372 0.75994 1.90719 1.70617 1.32842 1.50059 1.22808 0.91634 0.82886 1.06368 1.86563 1.25170 1.30399 1.84837 1.24167 0.79315 0.93827 0.71813 1.90691 1.60462 1.43650 1.44838 1.21455 0.96266 0.89218 1.05552 1.18071 0.90449 0.90805 0.96887 0.93932 1.20836 1.11389 1.26665 0.92734 0.94565 1.25650 0.98102 0.94948 0.98401 1.70028 1.26811 1.34023 1.28250 0.86165 0.76932 0.80158 0.82269 1.20901 1.14485 1.22422 1.20389 0.97347 0.95277 0.93651 1.21040 1.00790 0.93670 0.98176 1.21387 0.98284 0.96160 0.98681 1.21346 1.00047 1.00379 0.93806 1.21351 0.99878 0.92984 1.00060 1.21274 1.00237 0.97462 0.97563 0.92381 0.91007 0.92556 0.90052 0.90318 0.92331 0.92003 0.74327 0.86385 0.87503 0.87865 0.86547 0.93117 0.87381 0.84505 0.83631 0.84055 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.13 -1.18 6.05 30.59 0.19 -0.99 16 3 C 0.12 1.84 5.67 86.38 0.49 2.33 16 4 N -0.71 -12.58 5.56 -463.05 -2.57 -15.15 16 5 C 0.52 14.03 7.91 87.66 0.69 14.72 16 6 O -0.56 -20.29 16.50 15.79 0.26 -20.03 16 7 C 0.04 1.13 5.94 71.24 0.42 1.55 16 8 O -0.35 -12.83 9.76 -45.12 -0.44 -13.27 16 9 C 0.47 18.95 7.71 71.23 0.55 19.50 16 10 O -0.51 -24.10 14.77 21.97 0.32 -23.77 16 11 C -0.09 -3.35 5.08 29.84 0.15 -3.19 16 12 C 0.06 2.55 1.17 -12.28 -0.01 2.53 16 13 H 0.04 1.97 4.94 -2.39 -0.01 1.96 16 14 C -0.48 -26.50 6.88 25.60 0.18 -26.32 16 15 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 16 C 0.03 1.53 5.47 84.65 0.46 1.99 16 17 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 18 Si 0.92 45.68 27.00 68.60 1.85 47.53 16 19 H -0.28 -14.23 7.11 99.48 0.71 -13.52 16 20 H -0.22 -9.77 4.72 99.48 0.47 -9.30 16 21 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 22 C -0.07 -2.66 4.65 -19.87 -0.09 -2.76 16 23 C -0.12 -4.50 8.93 22.27 0.20 -4.30 16 24 C -0.13 -3.95 10.05 22.27 0.22 -3.73 16 25 C -0.14 -3.82 10.05 22.27 0.22 -3.60 16 26 C -0.12 -3.68 10.05 22.27 0.22 -3.46 16 27 C -0.15 -5.26 8.69 22.27 0.19 -5.07 16 28 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.42 4.65 8.47 -92.71 -0.79 3.87 16 36 H 0.12 2.80 8.13 -2.39 -0.02 2.78 16 37 H 0.11 2.87 8.13 -2.38 -0.02 2.85 16 38 H 0.10 3.85 8.05 -2.39 -0.02 3.83 16 39 H 0.12 3.68 8.14 -2.38 -0.02 3.66 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.11 4.27 7.87 -2.91 -0.02 4.25 16 42 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 44 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 45 H 0.12 3.96 7.12 -2.91 -0.02 3.94 16 Total: -1.00 -79.10 379.10 4.49 -74.61 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.04 Total: 21.74 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 4.80 Total: -11.37 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -2.27 Total: -75.43 kcal Atomic # 8 Polarization: -57.22 SS G_CDS: 0.14 Total: -57.07 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.85 Total: 47.53 kcal Total: -79.10 4.49 -74.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795983865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.070 kcal (2) G-P(sol) polarization free energy of solvation -79.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds