Wall clock time and date at job start Tue Mar 31 2020 13:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47673 * 2 1 4 4 O 1.20828 * 119.99842 * 0.02562 * 3 2 1 5 5 O 1.34229 * 120.00259 * 179.97438 * 3 2 1 6 6 C 1.45203 * 116.99847 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.46988 * 180.02562 * 6 5 3 8 8 O 1.21292 * 119.99946 * 5.12953 * 7 6 5 9 9 N 1.34772 * 120.00198 * 185.40420 * 7 6 5 10 10 C 1.46503 * 120.00664 * 184.94093 * 9 7 6 11 11 C 1.50698 * 109.47297 * 89.99617 * 10 9 7 12 12 H 1.08009 * 119.99884 * 0.02562 * 11 10 9 13 13 C 1.37868 * 120.00324 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00042 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00540 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47085 * 89.99777 * 15 13 11 17 17 H 1.48498 * 109.47653 * 210.00126 * 15 13 11 18 18 H 1.48506 * 109.46831 * 330.00409 * 15 13 11 19 19 C 1.39929 * 119.99952 * 4.93866 * 9 7 6 20 20 C 1.38869 * 120.07144 * 292.49335 * 19 9 7 21 21 C 1.38110 * 119.93031 * 179.69676 * 20 19 9 22 22 C 1.50699 * 119.96761 * 180.29489 * 21 20 19 23 23 C 1.38285 * 120.07096 * 0.57303 * 21 20 19 24 24 C 1.38284 * 120.13916 * 359.71985 * 23 21 20 25 25 C 1.50700 * 119.96754 * 179.97438 * 24 23 21 26 26 C 1.38118 * 120.07011 * 359.97438 * 24 23 21 27 27 H 1.09000 * 109.47010 * 300.00178 * 1 2 3 28 28 H 1.08998 * 109.47114 * 59.99574 * 1 2 3 29 29 H 1.08996 * 109.47608 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47500 * 240.00018 * 2 1 3 31 31 H 1.09000 * 109.47550 * 120.00133 * 2 1 3 32 32 H 1.08995 * 109.47215 * 60.00274 * 6 5 3 33 33 H 1.09005 * 109.46969 * 299.99963 * 6 5 3 34 34 H 1.08995 * 109.47091 * 210.00421 * 10 9 7 35 35 H 1.09005 * 109.46644 * 329.99989 * 10 9 7 36 36 H 0.97000 * 120.00652 * 179.97438 * 14 13 11 37 37 H 1.07999 * 120.03421 * 359.96995 * 20 19 9 38 38 H 1.08996 * 109.47109 * 270.27727 * 22 21 20 39 39 H 1.08997 * 109.46949 * 30.27547 * 22 21 20 40 40 H 1.09000 * 109.47175 * 150.27827 * 22 21 20 41 41 H 1.07994 * 119.93717 * 179.69977 * 23 21 20 42 42 H 1.08991 * 109.47527 * 269.98206 * 25 24 23 43 43 H 1.08998 * 109.46668 * 29.98141 * 25 24 23 44 44 H 1.09002 * 109.47113 * 149.97905 * 25 24 23 45 45 H 1.08000 * 120.03483 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2473 2.3392 0.0005 5 8 3.3521 1.6660 0.0005 6 6 3.7638 3.0584 0.0011 7 6 5.2688 3.1372 0.0010 8 8 5.9291 2.1242 -0.0934 9 7 5.8810 4.3328 0.1113 10 6 7.3393 4.4219 0.0027 11 6 7.7232 4.6414 -1.4379 12 1 6.9575 4.7083 -2.1967 13 6 9.0518 4.7569 -1.7874 14 7 9.9843 4.6750 -0.8636 15 14 9.5278 5.0297 -3.5730 16 1 9.5843 6.4870 -3.8532 17 1 10.8596 4.4246 -3.8284 18 1 8.5177 4.3945 -4.4571 19 6 5.1238 5.4890 0.3297 20 6 4.2717 5.9601 -0.6606 21 6 3.5210 7.0981 -0.4396 22 6 2.5912 7.6063 -1.5111 23 6 3.6260 7.7751 0.7617 24 6 4.4781 7.3120 1.7474 25 6 4.5899 8.0530 3.0549 26 6 5.2268 6.1709 1.5350 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.3739 3.5523 0.8910 33 1 3.3744 3.5528 -0.8890 34 1 7.6982 5.2560 0.6056 35 1 7.7876 3.4952 0.3610 36 1 10.9192 4.7559 -1.1094 37 1 4.1929 5.4346 -1.6008 38 1 3.1273 8.3006 -2.1580 39 1 2.2254 6.7671 -2.1027 40 1 1.7482 8.1188 -1.0475 41 1 3.0416 8.6674 0.9303 42 1 5.3775 8.8028 2.9814 43 1 3.6418 8.5426 3.2772 44 1 4.8312 7.3495 3.8518 45 1 5.8924 5.8100 2.3052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798121424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:01 Heat of formation + Delta-G solvation = -106.086906 kcal Electronic energy + Delta-G solvation = -27062.402893 eV Core-core repulsion = 23237.738326 eV Total energy + Delta-G solvation = -3824.664567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.63182 -39.90921 -38.44178 -36.46902 -35.15398 -33.40895 -33.14700 -32.82377 -30.28450 -29.33415 -27.20949 -26.76147 -26.52089 -24.85799 -22.82620 -22.28397 -20.65263 -20.49587 -18.79661 -17.82263 -17.03087 -16.83931 -16.52973 -16.00816 -15.92160 -15.47226 -15.31460 -14.78135 -14.26036 -13.89389 -13.79226 -13.64832 -13.17884 -13.13385 -12.83098 -12.72614 -12.67277 -12.59172 -12.45129 -12.15639 -11.91943 -11.88672 -11.52660 -11.42864 -11.39106 -11.19152 -11.04293 -10.87262 -10.67023 -10.62982 -10.53043 -10.21696 -9.78846 -9.38750 -8.57293 -8.48070 -8.35889 -7.75116 -6.10322 -4.15316 1.51247 1.56790 2.18224 2.47687 3.08477 3.28009 3.34239 3.38546 3.73319 3.89466 4.40212 4.59220 4.74143 4.84757 4.88309 4.89793 4.98203 5.18576 5.25050 5.26055 5.32367 5.37009 5.39615 5.43477 5.54017 5.59456 5.65711 5.65721 5.71539 5.73266 5.91976 5.93088 5.93402 6.15492 6.32164 6.41514 6.64024 6.71054 6.79224 6.91321 7.16359 7.27767 7.38695 7.72141 7.84803 8.12117 8.19811 8.70893 8.89260 9.49354 10.98102 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008433 B = 0.004830 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.502340 B = 5795.529195 C = 7722.085291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.457 3.543 4 O -0.512 6.512 5 O -0.332 6.332 6 C 0.051 3.949 7 C 0.517 3.483 8 O -0.506 6.506 9 N -0.555 5.555 10 C 0.249 3.751 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.064 3.936 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.162 3.838 20 C -0.132 4.132 21 C -0.071 4.071 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.073 4.073 25 C -0.111 4.111 26 C -0.127 4.127 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.039 0.961 35 H 0.051 0.949 36 H 0.265 0.735 37 H 0.123 0.877 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.119 0.881 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.761 1.011 4.658 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.300 3.700 4 O -0.400 6.400 5 O -0.247 6.247 6 C -0.026 4.026 7 C 0.303 3.697 8 O -0.380 6.380 9 N -0.284 5.284 10 C 0.132 3.868 11 C -0.568 4.568 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.727 3.273 16 H -0.206 1.206 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.070 3.930 20 C -0.151 4.151 21 C -0.072 4.072 22 C -0.169 4.169 23 C -0.149 4.149 24 C -0.074 4.074 25 C -0.168 4.168 26 C -0.147 4.147 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.137 0.863 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.348 0.708 4.631 17.969 hybrid contribution 0.512 0.465 -1.094 1.294 sum -16.836 1.173 3.537 17.244 Atomic orbital electron populations 1.21630 0.92397 1.02254 1.03563 1.21358 0.97695 0.90177 1.06155 1.23949 0.80468 0.93245 0.72313 1.90662 1.56776 1.46936 1.45658 1.86555 1.25508 1.29276 1.83364 1.22912 0.94724 0.80395 1.04611 1.19741 0.88017 0.83992 0.77979 1.90724 1.66209 1.33709 1.47389 1.45864 1.09845 1.03206 1.69524 1.19502 0.70457 0.99044 0.97800 1.21356 0.92287 1.50290 0.92869 0.92331 1.24897 0.96131 0.94964 0.97850 1.69923 1.00585 1.49703 1.32934 0.86472 0.77982 0.78251 0.84612 1.20554 1.20969 1.19827 1.17708 0.93125 0.89300 0.92878 1.21210 0.98504 0.97128 0.98296 1.19698 0.97307 0.94787 0.95416 1.20768 0.97746 1.01383 0.96957 1.20810 1.00494 1.00220 0.93379 1.19704 0.96271 0.95117 0.96291 1.20763 1.02200 0.99919 0.93909 1.21130 1.00535 0.96329 0.96675 0.91779 0.91761 0.91254 0.87479 0.87535 0.88784 0.88373 0.94337 0.93093 0.92579 0.85946 0.91112 0.91609 0.91675 0.86281 0.91096 0.91735 0.91578 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.15 0.34 -0.80 16 2 C -0.12 -1.09 6.53 -27.89 -0.18 -1.27 16 3 C 0.46 6.44 7.96 36.01 0.29 6.72 16 4 O -0.51 -8.18 15.73 -18.75 -0.29 -8.47 16 5 O -0.33 -5.62 9.76 -45.88 -0.45 -6.07 16 6 C 0.05 0.89 4.46 36.00 0.16 1.05 16 7 C 0.52 11.22 7.65 -10.99 -0.08 11.13 16 8 O -0.51 -12.93 16.06 -14.06 -0.23 -13.16 16 9 N -0.55 -12.15 2.51 -114.74 -0.29 -12.44 16 10 C 0.25 6.52 5.15 -5.19 -0.03 6.50 16 11 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 12 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 13 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 15 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.16 3.01 4.43 -83.69 -0.37 2.64 16 20 C -0.13 -2.21 8.10 -39.39 -0.32 -2.53 16 21 C -0.07 -1.01 5.88 -104.65 -0.62 -1.63 16 22 C -0.11 -1.24 10.01 36.01 0.36 -0.88 16 23 C -0.13 -1.73 9.35 -39.55 -0.37 -2.10 16 24 C -0.07 -1.02 5.88 -104.65 -0.62 -1.63 16 25 C -0.11 -1.18 10.01 36.01 0.36 -0.82 16 26 C -0.13 -2.10 9.31 -39.39 -0.37 -2.47 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.51 7.86 -51.93 -0.41 1.11 16 33 H 0.10 1.61 6.90 -51.93 -0.36 1.25 16 34 H 0.04 1.03 7.84 -51.93 -0.41 0.62 16 35 H 0.05 1.48 7.36 -51.93 -0.38 1.09 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.12 2.05 7.57 -52.49 -0.40 1.65 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 40 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 44 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 45 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 385.98 15.07 5.82 5.82 Total: -1.00 -34.04 385.98 -8.56 -42.60 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.98 Total: 0.14 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.86 Total: 0.33 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 0.45 Total: -38.03 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.97 Total: -27.70 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.04 -8.56 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798121424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.482 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds