Wall clock time and date at job start Tue Mar 31 2020 13:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47673 * 2 1 4 4 O 1.20828 * 119.99842 * 0.02562 * 3 2 1 5 5 O 1.34229 * 120.00259 * 179.97438 * 3 2 1 6 6 C 1.45203 * 116.99847 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.46988 * 180.02562 * 6 5 3 8 8 O 1.21292 * 119.99946 * 5.12953 * 7 6 5 9 9 N 1.34772 * 120.00198 * 185.40420 * 7 6 5 10 10 C 1.46503 * 120.00664 * 184.94093 * 9 7 6 11 11 C 1.50698 * 109.47297 * 89.99617 * 10 9 7 12 12 H 1.08009 * 119.99884 * 0.02562 * 11 10 9 13 13 C 1.37868 * 120.00324 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00042 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00540 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47085 * 89.99777 * 15 13 11 17 17 H 1.48498 * 109.47653 * 210.00126 * 15 13 11 18 18 H 1.48506 * 109.46831 * 330.00409 * 15 13 11 19 19 C 1.39929 * 119.99952 * 4.93866 * 9 7 6 20 20 C 1.38869 * 120.07144 * 292.49335 * 19 9 7 21 21 C 1.38110 * 119.93031 * 179.69676 * 20 19 9 22 22 C 1.50699 * 119.96761 * 180.29489 * 21 20 19 23 23 C 1.38285 * 120.07096 * 0.57303 * 21 20 19 24 24 C 1.38284 * 120.13916 * 359.71985 * 23 21 20 25 25 C 1.50700 * 119.96754 * 179.97438 * 24 23 21 26 26 C 1.38118 * 120.07011 * 359.97438 * 24 23 21 27 27 H 1.09000 * 109.47010 * 300.00178 * 1 2 3 28 28 H 1.08998 * 109.47114 * 59.99574 * 1 2 3 29 29 H 1.08996 * 109.47608 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47500 * 240.00018 * 2 1 3 31 31 H 1.09000 * 109.47550 * 120.00133 * 2 1 3 32 32 H 1.08995 * 109.47215 * 60.00274 * 6 5 3 33 33 H 1.09005 * 109.46969 * 299.99963 * 6 5 3 34 34 H 1.08995 * 109.47091 * 210.00421 * 10 9 7 35 35 H 1.09005 * 109.46644 * 329.99989 * 10 9 7 36 36 H 0.97000 * 120.00652 * 179.97438 * 14 13 11 37 37 H 1.07999 * 120.03421 * 359.96995 * 20 19 9 38 38 H 1.08996 * 109.47109 * 270.27727 * 22 21 20 39 39 H 1.08997 * 109.46949 * 30.27547 * 22 21 20 40 40 H 1.09000 * 109.47175 * 150.27827 * 22 21 20 41 41 H 1.07994 * 119.93717 * 179.69977 * 23 21 20 42 42 H 1.08991 * 109.47527 * 269.98206 * 25 24 23 43 43 H 1.08998 * 109.46668 * 29.98141 * 25 24 23 44 44 H 1.09002 * 109.47113 * 149.97905 * 25 24 23 45 45 H 1.08000 * 120.03483 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2473 2.3392 0.0005 5 8 3.3521 1.6660 0.0005 6 6 3.7638 3.0584 0.0011 7 6 5.2688 3.1372 0.0010 8 8 5.9291 2.1242 -0.0934 9 7 5.8810 4.3328 0.1113 10 6 7.3393 4.4219 0.0027 11 6 7.7232 4.6414 -1.4379 12 1 6.9575 4.7083 -2.1967 13 6 9.0518 4.7569 -1.7874 14 7 9.9843 4.6750 -0.8636 15 14 9.5278 5.0297 -3.5730 16 1 9.5843 6.4870 -3.8532 17 1 10.8596 4.4246 -3.8284 18 1 8.5177 4.3945 -4.4571 19 6 5.1238 5.4890 0.3297 20 6 4.2717 5.9601 -0.6606 21 6 3.5210 7.0981 -0.4396 22 6 2.5912 7.6063 -1.5111 23 6 3.6260 7.7751 0.7617 24 6 4.4781 7.3120 1.7474 25 6 4.5899 8.0530 3.0549 26 6 5.2268 6.1709 1.5350 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.3739 3.5523 0.8910 33 1 3.3744 3.5528 -0.8890 34 1 7.6982 5.2560 0.6056 35 1 7.7876 3.4952 0.3610 36 1 10.9192 4.7559 -1.1094 37 1 4.1929 5.4346 -1.6008 38 1 3.1273 8.3006 -2.1580 39 1 2.2254 6.7671 -2.1027 40 1 1.7482 8.1188 -1.0475 41 1 3.0416 8.6674 0.9303 42 1 5.3775 8.8028 2.9814 43 1 3.6418 8.5426 3.2772 44 1 4.8312 7.3495 3.8518 45 1 5.8924 5.8100 2.3052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798121424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:00 Heat of formation + Delta-G solvation = -124.128172 kcal Electronic energy + Delta-G solvation = -27063.185221 eV Core-core repulsion = 23237.738326 eV Total energy + Delta-G solvation = -3825.446895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98200 -41.25626 -39.89330 -37.75992 -36.84088 -34.94794 -34.45180 -33.94148 -31.76653 -30.87430 -28.73194 -28.05030 -27.62667 -25.90173 -24.75253 -23.68617 -21.76320 -21.59023 -20.35795 -19.01529 -18.77346 -18.40347 -18.04106 -17.47547 -17.18510 -16.93615 -16.84554 -16.18637 -15.86375 -15.17786 -14.97823 -14.82562 -14.45561 -14.40782 -14.05370 -13.94053 -13.89813 -13.76082 -13.52615 -13.35207 -13.29492 -13.13827 -12.85008 -12.70321 -12.66761 -12.52042 -12.43211 -12.16366 -12.11867 -12.08857 -11.95309 -11.79253 -11.68202 -11.08889 -10.70007 -10.15334 -9.53225 -9.30258 -8.28852 -6.43960 0.25474 0.37671 1.06825 1.19730 1.32685 1.36186 1.39194 1.47962 2.21516 2.36772 2.68602 3.01359 3.24487 3.56883 3.80139 3.86224 3.89632 3.94708 4.13555 4.16646 4.18648 4.38319 4.41899 4.44587 4.58814 4.69822 4.82842 4.85257 4.88550 4.90124 4.95803 4.99395 5.01108 5.05170 5.15030 5.22538 5.30493 5.35717 5.37057 5.51395 5.57587 5.64822 5.67891 5.94012 6.00339 6.44913 6.60189 6.62020 7.02777 7.26797 8.79088 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008433 B = 0.004830 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3319.502340 B = 5795.529195 C = 7722.085291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.453 3.547 4 O -0.533 6.533 5 O -0.351 6.351 6 C 0.069 3.931 7 C 0.510 3.490 8 O -0.558 6.558 9 N -0.554 5.554 10 C 0.267 3.733 11 C -0.547 4.547 12 H 0.053 0.947 13 C 0.013 3.987 14 N -0.925 5.925 15 Si 0.969 3.031 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.272 1.272 19 C 0.127 3.873 20 C -0.146 4.146 21 C -0.069 4.069 22 C -0.110 4.110 23 C -0.121 4.121 24 C -0.069 4.069 25 C -0.110 4.110 26 C -0.145 4.145 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.026 0.974 35 H 0.011 0.989 36 H 0.270 0.730 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.159 0.841 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.227 2.644 4.106 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.298 3.702 4 O -0.422 6.422 5 O -0.267 6.267 6 C -0.008 4.008 7 C 0.298 3.702 8 O -0.436 6.436 9 N -0.282 5.282 10 C 0.147 3.853 11 C -0.586 4.586 12 H 0.071 0.929 13 C -0.187 4.187 14 N -0.564 5.564 15 Si 0.792 3.208 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.196 1.196 19 C 0.037 3.963 20 C -0.166 4.166 21 C -0.070 4.070 22 C -0.167 4.167 23 C -0.139 4.139 24 C -0.070 4.070 25 C -0.166 4.166 26 C -0.164 4.164 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.176 0.824 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -19.860 2.374 4.095 20.417 hybrid contribution 1.210 0.009 -0.845 1.476 sum -18.651 2.384 3.250 19.081 Atomic orbital electron populations 1.21654 0.91229 1.03900 1.02690 1.21602 0.98435 0.86954 1.07904 1.24995 0.79069 0.95006 0.71099 1.90642 1.56793 1.48050 1.46743 1.86583 1.27594 1.28600 1.83892 1.22612 0.91133 0.81465 1.05631 1.20486 0.89889 0.83129 0.76653 1.90676 1.67714 1.35294 1.49927 1.45661 1.08550 1.04887 1.69142 1.18933 0.73403 0.96223 0.96707 1.21587 0.92694 1.50753 0.93521 0.92900 1.25819 0.95943 0.94334 1.02570 1.70038 1.01050 1.50122 1.35172 0.85400 0.77689 0.78879 0.78792 1.18943 1.20149 1.19630 1.17962 0.94598 0.89106 0.94682 1.21232 0.99247 0.98501 0.97605 1.20100 0.96685 0.93429 0.96740 1.20843 0.97896 1.01714 0.96242 1.21283 0.99631 1.00753 0.92251 1.20109 0.94989 0.93866 0.98003 1.20842 1.03959 0.99852 0.91978 1.21211 1.01565 0.97670 0.96002 0.92588 0.92708 0.88302 0.85708 0.85521 0.87439 0.87312 0.95619 0.97127 0.92155 0.86820 0.90311 0.91559 0.89007 0.82384 0.90379 0.88977 0.91368 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.20 71.98 0.66 -1.29 16 2 C -0.11 -1.90 6.53 29.85 0.19 -1.70 16 3 C 0.45 12.56 7.96 71.24 0.57 13.13 16 4 O -0.53 -16.76 15.73 21.96 0.35 -16.42 16 5 O -0.35 -12.13 9.76 -45.07 -0.44 -12.57 16 6 C 0.07 2.48 4.46 71.23 0.32 2.80 16 7 C 0.51 23.59 7.65 87.66 0.67 24.26 16 8 O -0.56 -30.56 16.06 15.68 0.25 -30.31 16 9 N -0.55 -25.91 2.51 -635.30 -1.59 -27.50 16 10 C 0.27 14.99 5.15 85.63 0.44 15.43 16 11 C -0.55 -32.39 9.39 25.60 0.24 -32.15 16 12 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 13 C 0.01 0.76 5.46 84.65 0.46 1.22 16 14 N -0.92 -56.26 13.29 21.44 0.28 -55.98 16 15 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 16 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 19 C 0.13 4.91 4.43 38.15 0.17 5.08 16 20 C -0.15 -4.94 8.10 22.39 0.18 -4.76 16 21 C -0.07 -1.81 5.88 -19.88 -0.12 -1.92 16 22 C -0.11 -2.10 10.01 71.24 0.71 -1.39 16 23 C -0.12 -2.81 9.35 22.29 0.21 -2.60 16 24 C -0.07 -1.80 5.88 -19.88 -0.12 -1.91 16 25 C -0.11 -2.03 10.01 71.24 0.71 -1.31 16 26 C -0.14 -4.92 9.31 22.39 0.21 -4.71 16 27 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 28 H 0.05 0.88 8.10 -2.39 -0.02 0.87 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.11 3.55 7.86 -2.39 -0.02 3.53 16 33 H 0.11 3.66 6.90 -2.38 -0.02 3.65 16 34 H 0.03 1.48 7.84 -2.39 -0.02 1.46 16 35 H 0.01 0.67 7.36 -2.38 -0.02 0.66 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.11 3.93 7.57 -2.91 -0.02 3.90 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.07 1.27 8.09 -2.39 -0.02 1.25 16 40 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 41 H 0.16 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 44 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 45 H 0.12 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -78.38 385.98 7.37 -71.01 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.97 Total: 16.17 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.52 Total: 8.16 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -1.31 Total: -83.48 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: 0.16 Total: -59.29 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -78.38 7.37 -71.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798121424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.117 kcal (2) G-P(sol) polarization free energy of solvation -78.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds