Wall clock time and date at job start Tue Mar 31 2020 13:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41595 * 114.00170 * 2 1 4 4 C 1.46497 * 120.00184 * 90.00393 * 3 2 1 5 5 C 1.52992 * 109.47408 * 89.99490 * 4 3 2 6 6 H 1.08998 * 109.46862 * 55.00859 * 5 4 3 7 7 C 1.52997 * 109.47482 * 295.00294 * 5 4 3 8 8 C 1.53000 * 109.47060 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 5 10 10 C 1.53002 * 109.46891 * 299.99597 * 9 8 7 11 11 H 1.09002 * 109.47097 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.47454 * 300.00332 * 10 9 8 13 13 C 1.52997 * 109.46978 * 60.00410 * 10 9 8 14 14 S 1.65600 * 119.99766 * 269.99893 * 3 2 1 15 15 O 1.42100 * 104.27973 * 31.07291 * 14 3 2 16 16 O 1.42102 * 104.27602 * 158.92707 * 14 3 2 17 17 C 1.81401 * 104.45121 * 274.99985 * 14 3 2 18 18 C 1.53002 * 109.46962 * 180.02562 * 17 14 3 19 19 C 1.50700 * 109.46807 * 180.02562 * 18 17 14 20 20 H 1.08003 * 120.00150 * 0.02562 * 19 18 17 21 21 C 1.37874 * 120.00103 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99791 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00232 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47112 * 89.99905 * 23 21 19 25 25 H 1.48503 * 109.47123 * 209.99799 * 23 21 19 26 26 H 1.48489 * 109.47126 * 329.99640 * 23 21 19 27 27 H 1.09003 * 109.47432 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46887 * 300.00031 * 1 2 3 29 29 H 1.09003 * 109.47347 * 59.99693 * 1 2 3 30 30 H 1.09002 * 109.47031 * 329.99636 * 4 3 2 31 31 H 1.09006 * 109.47249 * 210.00472 * 4 3 2 32 32 H 1.09002 * 109.47153 * 59.99783 * 7 5 4 33 33 H 1.09001 * 109.46832 * 299.99974 * 7 5 4 34 34 H 1.09004 * 109.46724 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47194 * 299.99650 * 8 7 5 36 36 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 37 37 H 1.09004 * 109.47108 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.47067 * 59.99861 * 12 10 9 39 39 H 1.09000 * 109.47312 * 179.97438 * 12 10 9 40 40 H 1.09004 * 109.46930 * 299.99944 * 12 10 9 41 41 H 1.09001 * 109.47375 * 59.99908 * 13 10 9 42 42 H 1.09000 * 109.47140 * 179.97438 * 13 10 9 43 43 H 1.09003 * 109.47043 * 299.99937 * 17 14 3 44 44 H 1.08997 * 109.47134 * 60.00088 * 17 14 3 45 45 H 1.08991 * 109.47518 * 299.99974 * 18 17 14 46 46 H 1.09003 * 109.46847 * 60.00261 * 18 17 14 47 47 H 0.96998 * 119.99647 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.3030 1.9627 1.2687 5 6 3.7244 1.6088 1.7103 6 1 4.4249 1.8571 0.9131 7 6 3.8064 0.1114 2.0135 8 6 5.2278 -0.2422 2.4558 9 6 5.5832 0.5530 3.7136 10 6 5.5013 2.0504 3.4104 11 1 5.7549 2.6169 4.3064 12 6 6.4850 2.3989 2.2917 13 6 4.0799 2.4041 2.9682 14 16 2.3417 2.0499 -1.4342 15 8 1.3482 1.5659 -2.3274 16 8 2.4133 3.4280 -1.0952 17 6 3.9785 1.4237 -1.9027 18 6 4.4064 2.0568 -3.2282 19 6 5.7659 1.5361 -3.6178 20 1 6.2737 0.8245 -2.9836 21 6 6.3615 1.9682 -4.7837 22 7 5.7430 2.8345 -5.5563 23 14 8.0470 1.3234 -5.2663 24 1 7.8908 0.0993 -6.0924 25 1 8.7682 2.3596 -6.0483 26 1 8.8219 0.9987 -4.0419 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.5939 1.6336 2.0284 31 1 2.2209 3.0418 1.1384 32 1 3.5527 -0.4551 1.1175 33 1 3.1058 -0.1367 2.8108 34 1 5.2863 -1.3091 2.6713 35 1 5.9287 0.0060 1.6588 36 1 4.8824 0.3047 4.5106 37 1 6.5957 0.3006 4.0290 38 1 6.2318 1.8324 1.3956 39 1 6.4263 3.4656 2.0754 40 1 7.4977 2.1469 2.6068 41 1 3.3790 2.1558 3.7652 42 1 4.0214 3.4710 2.7527 43 1 4.7011 1.6801 -1.1280 44 1 3.9347 0.3403 -2.0145 45 1 3.6841 1.8009 -4.0032 46 1 4.4504 3.1402 -3.1159 47 1 6.1619 3.1382 -6.3767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810124353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:39 Heat of formation + Delta-G solvation = -99.089629 kcal Electronic energy + Delta-G solvation = -27062.854775 eV Core-core repulsion = 23373.937584 eV Total energy + Delta-G solvation = -3688.917191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.47035 -37.55636 -36.76294 -35.57785 -34.00303 -33.89472 -31.59656 -31.17231 -30.45645 -26.80129 -26.74498 -25.63621 -24.80554 -22.31071 -21.85615 -21.00166 -19.21334 -18.68975 -17.83481 -16.97413 -16.56222 -16.08887 -15.41099 -15.16405 -14.91571 -14.69387 -14.58388 -14.34590 -14.26528 -13.80640 -13.46499 -13.34106 -12.86923 -12.57517 -12.52905 -12.23936 -12.08627 -11.78624 -11.77234 -11.69405 -11.56534 -11.49831 -11.39783 -11.08519 -11.03415 -10.99264 -10.82907 -10.54508 -10.43540 -10.36412 -10.17682 -10.09752 -9.89072 -9.70976 -9.36273 -8.95976 -8.50094 -6.12406 -4.17726 0.47658 2.34177 3.26757 3.33009 3.35733 3.84215 4.16926 4.37699 4.52378 4.64591 4.66403 4.71830 5.01093 5.14745 5.20484 5.23042 5.25591 5.36246 5.37649 5.39141 5.43746 5.45156 5.56488 5.58751 5.67416 5.69235 5.73898 5.78935 5.87823 5.90034 5.96337 6.00122 6.03539 6.16339 6.23271 6.28102 6.32906 6.45273 6.48980 6.57326 7.01136 7.28622 7.34417 7.80976 8.16989 8.85561 9.47016 10.98711 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.005129 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.137543 B = 5457.330083 C = 7161.956681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 O -0.120 6.120 3 N -0.870 5.870 4 C 0.110 3.890 5 C -0.113 4.113 6 H 0.079 0.921 7 C -0.107 4.107 8 C -0.125 4.125 9 C -0.113 4.113 10 C -0.089 4.089 11 H 0.066 0.934 12 C -0.157 4.157 13 C -0.107 4.107 14 S 2.588 3.412 15 O -0.955 6.955 16 O -0.951 6.951 17 C -0.577 4.577 18 C 0.028 3.972 19 C -0.517 4.517 20 H 0.062 0.938 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.033 0.967 46 H 0.033 0.967 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 -4.319 19.260 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 O -0.128 6.128 3 N -0.743 5.743 4 C -0.015 4.015 5 C -0.133 4.133 6 H 0.097 0.903 7 C -0.145 4.145 8 C -0.162 4.162 9 C -0.150 4.150 10 C -0.108 4.108 11 H 0.085 0.915 12 C -0.214 4.214 13 C -0.145 4.145 14 S 2.687 3.313 15 O -0.946 6.946 16 O -0.942 6.942 17 C -0.711 4.711 18 C -0.011 4.011 19 C -0.557 4.557 20 H 0.081 0.919 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.864 -3.783 18.715 19.973 hybrid contribution 1.100 -0.716 -0.093 1.315 sum -4.765 -4.498 18.622 19.741 Atomic orbital electron populations 1.23425 0.82342 1.03575 1.01712 1.90512 1.19668 1.05979 1.96661 1.60591 1.72439 1.19402 1.21881 1.21760 0.96580 0.97442 0.85714 1.21740 0.96597 0.96509 0.98501 0.90256 1.21506 0.96217 0.95099 1.01657 1.21608 0.97498 0.99175 0.97935 1.21558 1.00895 0.94837 0.97751 1.21065 0.95167 0.96082 0.98456 0.91521 1.21995 0.98490 1.01818 0.99065 1.21547 0.96365 0.99837 0.96791 1.06194 0.78998 0.74138 0.71982 1.93523 1.56828 1.81280 1.62953 1.93565 1.88417 1.30151 1.82051 1.30457 1.17729 1.12218 1.10714 1.19000 0.98776 0.96354 0.86982 1.20980 1.01468 1.26403 1.06856 0.91932 1.25057 0.98172 0.94924 0.96258 1.69957 1.38401 1.31122 1.13427 0.86477 0.83561 0.78640 0.78673 1.20444 1.21014 1.19714 0.88040 0.93320 0.91750 0.89820 0.88059 0.90709 0.92454 0.92369 0.91376 0.92378 0.92394 0.91555 0.92523 0.92963 0.91930 0.91499 0.86041 0.85613 0.94829 0.94835 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 11.28 101.05 1.14 1.00 16 2 O -0.12 -1.67 10.20 -22.58 -0.23 -1.90 16 3 N -0.87 -12.66 2.87 -10.62 -0.03 -12.69 16 4 C 0.11 1.32 5.36 -4.05 -0.02 1.30 16 5 C -0.11 -1.29 2.12 -90.62 -0.19 -1.48 16 6 H 0.08 1.01 5.18 -51.93 -0.27 0.75 16 7 C -0.11 -1.17 4.97 -26.73 -0.13 -1.30 16 8 C -0.12 -1.28 5.65 -26.73 -0.15 -1.44 16 9 C -0.11 -1.03 5.45 -26.73 -0.15 -1.18 16 10 C -0.09 -0.84 3.19 -90.62 -0.29 -1.13 16 11 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 12 C -0.16 -1.69 8.50 37.16 0.32 -1.37 16 13 C -0.11 -1.03 4.73 -26.73 -0.13 -1.16 16 14 S 2.59 47.92 5.59 -107.50 -0.60 47.32 16 15 O -0.96 -20.20 16.65 -63.08 -1.05 -21.25 16 16 O -0.95 -19.17 16.48 -57.54 -0.95 -20.11 16 17 C -0.58 -11.28 6.12 37.16 0.23 -11.06 16 18 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 19 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 20 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 23 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.85 7.17 -51.93 -0.37 0.48 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.25 6.88 -51.93 -0.36 0.89 16 32 H 0.07 0.92 6.86 -51.93 -0.36 0.56 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.79 4.81 -51.93 -0.25 0.54 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.12 2.13 6.89 -51.92 -0.36 1.77 16 44 H 0.13 2.29 8.14 -51.93 -0.42 1.87 16 45 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -32.59 375.22 -9.59 -42.19 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.18 Total: 0.51 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 0.07 Total: -30.22 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.71 Total: -38.32 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -2.23 Total: -43.26 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 47.92 SS G_CDS: -0.60 Total: 47.32 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.59 -9.59 -42.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810124353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.902 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds