Wall clock time and date at job start Tue Mar 31 2020 13:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 N 1.41604 * 113.99860 * 2 1 4 4 C 1.46494 * 119.99729 * 89.99678 * 3 2 1 5 5 C 1.52999 * 109.47054 * 72.21995 * 4 3 2 6 6 H 1.09002 * 109.47135 * 300.84719 * 5 4 3 7 7 C 1.53001 * 109.47350 * 60.84680 * 5 4 3 8 8 C 1.53003 * 109.47069 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47081 * 300.00081 * 8 7 5 10 10 C 1.53001 * 109.47235 * 60.00020 * 9 8 7 11 11 H 1.08997 * 109.46818 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.46903 * 59.99923 * 10 9 8 13 13 C 1.53003 * 109.47069 * 299.99987 * 10 9 8 14 14 S 1.65596 * 119.99549 * 269.99689 * 3 2 1 15 15 O 1.42103 * 104.28166 * 34.78561 * 14 3 2 16 16 O 1.42106 * 104.27130 * 162.63931 * 14 3 2 17 17 C 1.81400 * 104.45157 * 278.71048 * 14 3 2 18 18 C 1.52998 * 109.47031 * 170.22874 * 17 14 3 19 19 C 1.50698 * 109.47026 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99969 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00109 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00055 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00078 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47349 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47110 * 119.99885 * 23 21 19 26 26 H 1.48499 * 109.47027 * 239.99552 * 23 21 19 27 27 H 1.09001 * 109.47259 * 299.99878 * 1 2 3 28 28 H 1.08998 * 109.46741 * 60.00051 * 1 2 3 29 29 H 1.09001 * 109.46777 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47525 * 312.21445 * 4 3 2 31 31 H 1.09008 * 109.46749 * 192.21077 * 4 3 2 32 32 H 1.09002 * 109.46970 * 59.99937 * 7 5 4 33 33 H 1.08997 * 109.46818 * 300.00065 * 7 5 4 34 34 H 1.09003 * 109.46734 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.46926 * 59.99916 * 8 7 5 36 36 H 1.09002 * 109.46935 * 300.00252 * 9 8 7 37 37 H 1.08992 * 109.46887 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.47158 * 59.99850 * 12 10 9 39 39 H 1.08997 * 109.47549 * 299.99755 * 12 10 9 40 40 H 1.09003 * 109.47205 * 179.97438 * 12 10 9 41 41 H 1.08997 * 109.47074 * 180.02562 * 13 10 9 42 42 H 1.09003 * 109.46926 * 300.00083 * 13 10 9 43 43 H 1.09001 * 109.46691 * 290.22448 * 17 14 3 44 44 H 1.08992 * 109.46902 * 50.22930 * 17 14 3 45 45 H 1.09002 * 109.47138 * 300.00321 * 18 17 14 46 46 H 1.09006 * 109.47084 * 59.99759 * 18 17 14 47 47 H 0.96999 * 120.00288 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3028 1.9628 1.2687 5 6 3.5062 1.2885 1.9307 6 1 3.2828 0.2359 2.1045 7 6 4.7252 1.4065 1.0136 8 6 5.9284 0.7317 1.6754 9 6 6.2266 1.4164 3.0108 10 6 5.0075 1.2985 3.9278 11 1 5.2198 1.7867 4.8789 12 6 4.6935 -0.1790 4.1712 13 6 3.8043 1.9733 3.2660 14 16 2.3418 2.0499 -1.4342 15 8 1.2970 1.6347 -2.3032 16 8 2.5006 3.4170 -1.0804 17 6 3.9264 1.3400 -1.9591 18 6 4.2313 1.7778 -3.3931 19 6 5.5474 1.1875 -3.8294 20 1 6.1103 0.5629 -3.1516 21 6 6.0335 1.4457 -5.0936 22 7 5.3483 2.2067 -5.9188 23 14 7.6652 0.7146 -5.6342 24 1 8.2341 -0.0977 -4.5289 25 1 7.4512 -0.1481 -6.8238 26 1 8.6077 1.8089 -5.9795 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.4382 1.8920 1.9286 31 1 2.5319 3.0118 1.0811 32 1 4.9486 2.4591 0.8398 33 1 4.5129 0.9182 0.0625 34 1 6.7970 0.8161 1.0222 35 1 5.7047 -0.3210 1.8488 36 1 6.4502 2.4691 2.8373 37 1 7.0839 0.9360 3.4819 38 1 5.5508 -0.6597 4.6426 39 1 4.4811 -0.6668 3.2199 40 1 3.8253 -0.2630 4.8249 41 1 2.9360 1.8897 3.9195 42 1 4.0281 3.0259 3.0926 43 1 4.7182 1.6892 -1.2965 44 1 3.8694 0.2524 -1.9157 45 1 3.4394 1.4287 -4.0557 46 1 4.2882 2.8655 -3.4365 47 1 5.6900 2.3881 -6.8083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810124356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:46 Heat of formation + Delta-G solvation = -91.578766 kcal Electronic energy + Delta-G solvation = -27075.063881 eV Core-core repulsion = 23386.472386 eV Total energy + Delta-G solvation = -3688.591495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.50484 -37.55999 -36.78953 -35.59371 -34.08435 -33.89603 -31.74686 -31.06231 -30.46811 -26.88951 -26.78301 -25.72692 -24.86190 -22.43816 -21.47531 -21.17829 -19.38331 -18.64819 -17.75797 -16.94753 -16.61402 -16.01651 -15.56543 -15.21104 -14.93195 -14.71273 -14.63506 -14.32355 -14.26413 -13.84506 -13.45065 -13.40737 -12.90818 -12.54759 -12.50886 -12.26560 -12.12657 -11.91014 -11.79336 -11.70902 -11.58959 -11.50238 -11.42207 -11.12823 -11.05606 -10.92570 -10.82085 -10.57199 -10.41157 -10.27918 -10.16755 -10.07813 -9.79892 -9.72177 -9.35023 -8.94763 -8.49984 -6.12069 -4.17275 0.46672 2.33056 3.26085 3.33529 3.37062 3.84271 4.15227 4.37660 4.53041 4.60866 4.63030 4.71746 5.00600 5.15014 5.17303 5.23413 5.25790 5.33631 5.35866 5.38961 5.42373 5.49722 5.55236 5.61326 5.64253 5.64395 5.72740 5.76503 5.80104 5.83061 5.90144 5.96260 6.02842 6.16200 6.20524 6.23110 6.31940 6.37136 6.53919 6.55355 7.00524 7.28413 7.36007 7.81574 8.17457 8.86342 9.47510 10.99076 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.004821 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.052033 B = 5805.988239 C = 7450.468731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.013 4.013 2 O -0.121 6.121 3 N -0.870 5.870 4 C 0.107 3.893 5 C -0.102 4.102 6 H 0.084 0.916 7 C -0.145 4.145 8 C -0.118 4.118 9 C -0.115 4.115 10 C -0.089 4.089 11 H 0.066 0.934 12 C -0.152 4.152 13 C -0.109 4.109 14 S 2.587 3.413 15 O -0.953 6.953 16 O -0.953 6.953 17 C -0.589 4.589 18 C 0.029 3.971 19 C -0.516 4.516 20 H 0.063 0.937 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.899 3.101 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.036 0.964 46 H 0.030 0.970 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 -3.204 20.148 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 O -0.128 6.128 3 N -0.743 5.743 4 C -0.018 4.018 5 C -0.122 4.122 6 H 0.102 0.898 7 C -0.182 4.182 8 C -0.156 4.156 9 C -0.153 4.153 10 C -0.107 4.107 11 H 0.084 0.916 12 C -0.209 4.209 13 C -0.147 4.147 14 S 2.686 3.314 15 O -0.944 6.944 16 O -0.944 6.944 17 C -0.723 4.723 18 C -0.010 4.010 19 C -0.556 4.556 20 H 0.081 0.919 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.994 -2.648 19.615 20.413 hybrid contribution 1.011 -0.776 -0.146 1.283 sum -3.983 -3.423 19.469 20.165 Atomic orbital electron populations 1.23441 0.82241 1.03629 1.01825 1.90514 1.19781 1.05878 1.96673 1.60550 1.72342 1.19560 1.21881 1.21781 0.97923 0.96978 0.85108 1.21570 0.94629 1.01228 0.94726 0.89803 1.22138 0.94652 1.01701 0.99687 1.21513 0.98095 0.99798 0.96151 1.21583 0.97006 1.00932 0.95766 1.21055 0.95275 0.96217 0.98191 0.91590 1.21951 1.00890 0.96099 1.01933 1.21576 0.97716 0.99728 0.95725 1.06215 0.78829 0.74344 0.71998 1.93525 1.53728 1.82883 1.64239 1.93560 1.88199 1.30835 1.81823 1.30732 1.17662 1.12658 1.11223 1.19000 0.99453 0.97591 0.84963 1.21021 1.04204 1.31286 0.99096 0.91855 1.25057 0.97749 0.95087 0.96538 1.69964 1.38389 1.37029 1.07528 0.86424 0.83258 0.78978 0.78705 1.19588 1.20810 1.20818 0.93304 0.91575 0.87993 0.90673 0.87227 0.91365 0.90193 0.91668 0.91701 0.91926 0.92334 0.93115 0.91678 0.93114 0.92038 0.91597 0.84893 0.85442 0.94539 0.95153 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.15 11.28 101.05 1.14 0.99 16 2 O -0.12 -1.72 11.38 -20.85 -0.24 -1.96 16 3 N -0.87 -12.89 2.58 -10.62 -0.03 -12.92 16 4 C 0.11 1.30 5.54 -4.05 -0.02 1.28 16 5 C -0.10 -1.11 2.15 -90.62 -0.19 -1.31 16 6 H 0.08 0.93 6.43 -51.93 -0.33 0.60 16 7 C -0.14 -1.81 4.06 -26.73 -0.11 -1.92 16 8 C -0.12 -1.33 5.65 -26.73 -0.15 -1.48 16 9 C -0.12 -1.11 5.45 -26.73 -0.15 -1.26 16 10 C -0.09 -0.78 3.19 -90.62 -0.29 -1.07 16 11 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 12 C -0.15 -1.28 8.50 37.15 0.32 -0.96 16 13 C -0.11 -1.00 4.73 -26.73 -0.13 -1.12 16 14 S 2.59 48.25 5.47 -107.50 -0.59 47.66 16 15 O -0.95 -20.44 16.63 -62.61 -1.04 -21.48 16 16 O -0.95 -19.03 16.29 -57.54 -0.94 -19.96 16 17 C -0.59 -11.53 4.42 37.16 0.16 -11.37 16 18 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 19 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 20 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 23 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.90 7.09 -51.93 -0.37 0.53 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 1.38 6.56 -51.92 -0.34 1.04 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.11 3.90 -51.93 -0.20 0.91 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.60 4.81 -51.93 -0.25 0.35 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.13 2.36 5.60 -51.92 -0.29 2.07 16 44 H 0.13 2.31 8.13 -51.93 -0.42 1.89 16 45 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -32.55 370.01 -9.51 -42.06 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.00 Total: 1.08 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 0.03 Total: -30.54 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.71 Total: -38.54 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -2.22 Total: -43.41 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 48.25 SS G_CDS: -0.59 Total: 47.66 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.55 -9.51 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810124356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.516 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds