Wall clock time and date at job start Tue Mar 31 2020 13:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 N 1.41604 * 113.99860 * 2 1 4 4 C 1.46494 * 119.99729 * 89.99678 * 3 2 1 5 5 C 1.52999 * 109.47054 * 72.21995 * 4 3 2 6 6 H 1.09002 * 109.47135 * 300.84719 * 5 4 3 7 7 C 1.53001 * 109.47350 * 60.84680 * 5 4 3 8 8 C 1.53003 * 109.47069 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47081 * 300.00081 * 8 7 5 10 10 C 1.53001 * 109.47235 * 60.00020 * 9 8 7 11 11 H 1.08997 * 109.46818 * 180.02562 * 10 9 8 12 12 C 1.52993 * 109.46903 * 59.99923 * 10 9 8 13 13 C 1.53003 * 109.47069 * 299.99987 * 10 9 8 14 14 S 1.65596 * 119.99549 * 269.99689 * 3 2 1 15 15 O 1.42103 * 104.28166 * 34.78561 * 14 3 2 16 16 O 1.42106 * 104.27130 * 162.63931 * 14 3 2 17 17 C 1.81400 * 104.45157 * 278.71048 * 14 3 2 18 18 C 1.52998 * 109.47031 * 170.22874 * 17 14 3 19 19 C 1.50698 * 109.47026 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99969 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00109 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00055 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00078 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47349 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47110 * 119.99885 * 23 21 19 26 26 H 1.48499 * 109.47027 * 239.99552 * 23 21 19 27 27 H 1.09001 * 109.47259 * 299.99878 * 1 2 3 28 28 H 1.08998 * 109.46741 * 60.00051 * 1 2 3 29 29 H 1.09001 * 109.46777 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47525 * 312.21445 * 4 3 2 31 31 H 1.09008 * 109.46749 * 192.21077 * 4 3 2 32 32 H 1.09002 * 109.46970 * 59.99937 * 7 5 4 33 33 H 1.08997 * 109.46818 * 300.00065 * 7 5 4 34 34 H 1.09003 * 109.46734 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.46926 * 59.99916 * 8 7 5 36 36 H 1.09002 * 109.46935 * 300.00252 * 9 8 7 37 37 H 1.08992 * 109.46887 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.47158 * 59.99850 * 12 10 9 39 39 H 1.08997 * 109.47549 * 299.99755 * 12 10 9 40 40 H 1.09003 * 109.47205 * 179.97438 * 12 10 9 41 41 H 1.08997 * 109.47074 * 180.02562 * 13 10 9 42 42 H 1.09003 * 109.46926 * 300.00083 * 13 10 9 43 43 H 1.09001 * 109.46691 * 290.22448 * 17 14 3 44 44 H 1.08992 * 109.46902 * 50.22930 * 17 14 3 45 45 H 1.09002 * 109.47138 * 300.00321 * 18 17 14 46 46 H 1.09006 * 109.47084 * 59.99759 * 18 17 14 47 47 H 0.96999 * 120.00288 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3028 1.9628 1.2687 5 6 3.5062 1.2885 1.9307 6 1 3.2828 0.2359 2.1045 7 6 4.7252 1.4065 1.0136 8 6 5.9284 0.7317 1.6754 9 6 6.2266 1.4164 3.0108 10 6 5.0075 1.2985 3.9278 11 1 5.2198 1.7867 4.8789 12 6 4.6935 -0.1790 4.1712 13 6 3.8043 1.9733 3.2660 14 16 2.3418 2.0499 -1.4342 15 8 1.2970 1.6347 -2.3032 16 8 2.5006 3.4170 -1.0804 17 6 3.9264 1.3400 -1.9591 18 6 4.2313 1.7778 -3.3931 19 6 5.5474 1.1875 -3.8294 20 1 6.1103 0.5629 -3.1516 21 6 6.0335 1.4457 -5.0936 22 7 5.3483 2.2067 -5.9188 23 14 7.6652 0.7146 -5.6342 24 1 8.2341 -0.0977 -4.5289 25 1 7.4512 -0.1481 -6.8238 26 1 8.6077 1.8089 -5.9795 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.4382 1.8920 1.9286 31 1 2.5319 3.0118 1.0811 32 1 4.9486 2.4591 0.8398 33 1 4.5129 0.9182 0.0625 34 1 6.7970 0.8161 1.0222 35 1 5.7047 -0.3210 1.8488 36 1 6.4502 2.4691 2.8373 37 1 7.0839 0.9360 3.4819 38 1 5.5508 -0.6597 4.6426 39 1 4.4811 -0.6668 3.2199 40 1 3.8253 -0.2630 4.8249 41 1 2.9360 1.8897 3.9195 42 1 4.0281 3.0259 3.0926 43 1 4.7182 1.6892 -1.2965 44 1 3.8694 0.2524 -1.9157 45 1 3.4394 1.4287 -4.0557 46 1 4.2882 2.8655 -3.4365 47 1 5.6900 2.3881 -6.8083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810124356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:46 Heat of formation + Delta-G solvation = -111.773787 kcal Electronic energy + Delta-G solvation = -27075.939603 eV Core-core repulsion = 23386.472386 eV Total energy + Delta-G solvation = -3689.467217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35427 -38.71990 -38.28149 -37.20583 -35.95765 -35.00005 -33.30881 -32.32787 -31.45497 -27.95388 -27.66125 -27.36744 -25.98865 -23.71247 -22.95423 -22.08533 -20.68909 -19.64303 -19.14083 -18.54787 -18.07535 -17.33768 -16.87123 -16.56673 -16.47355 -16.11314 -15.53255 -15.39445 -15.35575 -15.10741 -14.59913 -14.49007 -14.24600 -13.87798 -13.77539 -13.56974 -13.37680 -13.30702 -13.12452 -13.01379 -12.95369 -12.85296 -12.51655 -12.40304 -12.36025 -12.24045 -12.14318 -11.81164 -11.72461 -11.63446 -11.39211 -11.25765 -10.99789 -10.91211 -10.67432 -10.62289 -10.21829 -8.25883 -6.39381 -1.02812 1.02520 1.41252 1.41530 1.55077 2.37926 2.58392 2.64341 3.07879 3.20343 3.75779 3.80815 3.83184 3.99159 4.04886 4.20620 4.32107 4.36262 4.41186 4.50795 4.51348 4.52911 4.55977 4.63315 4.71510 4.76254 4.79296 4.83955 4.89244 4.92951 5.08121 5.11130 5.20321 5.23349 5.24053 5.25762 5.34526 5.39223 5.47072 5.53141 5.58571 5.68681 5.73780 5.92572 6.06023 6.73596 7.30627 8.86756 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.004821 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.052033 B = 5805.988239 C = 7450.468731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 O -0.128 6.128 3 N -0.863 5.863 4 C 0.100 3.900 5 C -0.094 4.094 6 H 0.087 0.913 7 C -0.153 4.153 8 C -0.118 4.118 9 C -0.114 4.114 10 C -0.086 4.086 11 H 0.079 0.921 12 C -0.150 4.150 13 C -0.107 4.107 14 S 2.611 3.389 15 O -0.985 6.985 16 O -0.969 6.969 17 C -0.588 4.588 18 C 0.024 3.976 19 C -0.534 4.534 20 H 0.075 0.925 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.972 3.028 24 H -0.257 1.257 25 H -0.278 1.278 26 H -0.277 1.277 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.150 0.850 44 H 0.141 0.859 45 H 0.008 0.992 46 H 0.007 0.993 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 -4.370 22.755 23.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 O -0.135 6.135 3 N -0.739 5.739 4 C -0.024 4.024 5 C -0.114 4.114 6 H 0.105 0.895 7 C -0.190 4.190 8 C -0.155 4.155 9 C -0.152 4.152 10 C -0.105 4.105 11 H 0.098 0.902 12 C -0.207 4.207 13 C -0.145 4.145 14 S 2.709 3.291 15 O -0.976 6.976 16 O -0.960 6.960 17 C -0.720 4.720 18 C -0.015 4.015 19 C -0.573 4.573 20 H 0.093 0.907 21 C -0.199 4.199 22 N -0.573 5.573 23 Si 0.796 3.204 24 H -0.180 1.180 25 H -0.204 1.204 26 H -0.203 1.203 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.151 0.849 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.168 0.832 44 H 0.159 0.841 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.553 -3.821 22.229 23.010 hybrid contribution 0.791 -0.431 -0.883 1.262 sum -3.763 -4.253 21.345 22.088 Atomic orbital electron populations 1.23692 0.80696 1.05683 1.01851 1.90509 1.21411 1.04875 1.96714 1.60029 1.72372 1.20083 1.21435 1.22095 0.99733 0.96481 0.84057 1.21517 0.93149 1.01534 0.95207 0.89475 1.22174 0.96192 1.01093 0.99542 1.21504 0.97045 1.00136 0.96842 1.21580 0.97973 1.00558 0.95063 1.21056 0.94447 0.96602 0.98374 0.90229 1.21932 1.01511 0.95667 1.01615 1.21584 0.98707 0.99461 0.94774 1.05190 0.77708 0.73882 0.72310 1.93482 1.54487 1.83354 1.66246 1.93534 1.88168 1.31930 1.82335 1.30657 1.19826 1.13663 1.07899 1.18834 0.98313 0.96105 0.88221 1.21485 1.04989 1.31258 0.99610 0.90723 1.26068 1.01783 0.95410 0.96678 1.70102 1.40541 1.38614 1.08081 0.85294 0.78330 0.78299 0.78527 1.18030 1.20358 1.20256 0.90955 0.93832 0.84931 0.87770 0.87780 0.92181 0.91956 0.92816 0.91309 0.92268 0.91516 0.92706 0.92689 0.92177 0.90206 0.91642 0.83198 0.84104 0.97320 0.97437 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.46 11.28 113.37 1.28 0.82 16 2 O -0.13 -3.44 11.38 -29.83 -0.34 -3.78 16 3 N -0.86 -24.64 2.58 -187.50 -0.48 -25.13 16 4 C 0.10 2.23 5.54 86.38 0.48 2.71 16 5 C -0.09 -1.87 2.15 -10.79 -0.02 -1.90 16 6 H 0.09 1.71 6.43 -2.39 -0.02 1.70 16 7 C -0.15 -3.70 4.06 30.60 0.12 -3.58 16 8 C -0.12 -2.53 5.65 30.60 0.17 -2.35 16 9 C -0.11 -1.99 5.45 30.60 0.17 -1.82 16 10 C -0.09 -1.27 3.19 -10.79 -0.03 -1.30 16 11 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 12 C -0.15 -2.11 8.50 71.98 0.61 -1.49 16 13 C -0.11 -1.65 4.73 30.60 0.14 -1.51 16 14 S 2.61 98.90 5.47 -56.49 -0.31 98.59 16 15 O -0.99 -43.39 16.63 -122.80 -2.04 -45.43 16 16 O -0.97 -39.23 16.29 -127.65 -2.08 -41.31 16 17 C -0.59 -23.57 4.42 71.98 0.32 -23.25 16 18 C 0.02 1.29 4.98 29.85 0.15 1.44 16 19 C -0.53 -29.83 9.11 25.60 0.23 -29.60 16 20 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 21 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 22 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 23 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.15 7.09 -2.39 -0.02 1.13 16 29 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 2.48 6.56 -2.38 -0.02 2.47 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.70 3.90 -2.39 -0.01 1.69 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.40 6.43 -2.39 -0.02 1.39 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.05 0.89 4.81 -2.39 -0.01 0.87 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 43 H 0.15 5.43 5.60 -2.39 -0.01 5.41 16 44 H 0.14 5.17 8.13 -2.39 -0.02 5.15 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 47 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -71.44 370.01 2.08 -69.36 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.94 Total: 20.14 kcal Atomic # 6 Polarization: -65.50 SS G_CDS: 4.08 Total: -61.41 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -0.20 Total: -81.70 kcal Atomic # 8 Polarization: -86.06 SS G_CDS: -4.46 Total: -90.52 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 98.90 SS G_CDS: -0.31 Total: 98.59 kcal Total: -71.44 2.08 -69.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810124356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.409 kcal (2) G-P(sol) polarization free energy of solvation -71.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds