Wall clock time and date at job start Tue Mar 31 2020 13:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.49544 * 2 1 4 4 C 1.53045 * 109.49279 * 120.09213 * 2 1 3 5 5 C 1.53354 * 109.60107 * 181.32917 * 4 2 1 6 6 H 1.08994 * 109.47936 * 58.55223 * 5 4 2 7 7 O 1.42896 * 109.68243 * 178.74756 * 5 4 2 8 8 C 1.53188 * 109.14951 * 298.71163 * 5 4 2 9 9 N 1.46928 * 108.89495 * 54.58106 * 8 5 4 10 10 C 1.34773 * 120.63196 * 126.29755 * 9 8 5 11 11 O 1.21282 * 120.00014 * 180.02562 * 10 9 8 12 12 C 1.50700 * 120.00082 * 0.02562 * 10 9 8 13 13 C 1.50703 * 109.47224 * 180.02562 * 12 10 9 14 14 C 1.38320 * 119.96315 * 269.71888 * 13 12 10 15 15 C 1.38281 * 120.13845 * 179.76410 * 14 13 12 16 16 C 1.38121 * 120.06667 * 0.51495 * 15 14 13 17 17 C 1.38864 * 119.93042 * 359.74439 * 16 15 14 18 18 O 1.35745 * 120.06872 * 179.97438 * 17 16 15 19 19 C 1.34831 * 117.00352 * 354.49019 * 18 17 16 20 20 H 1.08006 * 119.99866 * 5.05824 * 19 18 17 21 21 C 1.38648 * 120.00445 * 185.05598 * 19 18 17 22 22 N 1.31562 * 120.00047 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00224 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47192 * 60.00000 * 23 21 19 25 25 H 1.48505 * 109.47270 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47112 * 300.00013 * 23 21 19 27 27 C 1.38072 * 119.96717 * 90.00025 * 13 12 10 28 28 C 1.46921 * 118.73492 * 306.31954 * 9 8 5 29 29 H 1.09008 * 109.46824 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47365 * 300.06667 * 1 2 3 31 31 H 1.08998 * 109.46849 * 60.07226 * 1 2 3 32 32 H 1.08995 * 109.46302 * 301.33375 * 4 2 1 33 33 H 1.09001 * 109.45860 * 61.31752 * 4 2 1 34 34 H 0.96699 * 114.00316 * 179.74998 * 7 5 4 35 35 H 1.09003 * 109.59114 * 294.72040 * 8 5 4 36 36 H 1.09000 * 109.59103 * 174.44066 * 8 5 4 37 37 H 1.09001 * 109.47065 * 299.99818 * 12 10 9 38 38 H 1.09004 * 109.47001 * 59.99817 * 12 10 9 39 39 H 1.08006 * 119.93489 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.97017 * 180.26106 * 15 14 13 41 41 H 1.07996 * 120.03654 * 179.72411 * 16 15 14 42 42 H 0.96992 * 120.00115 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.03354 * 359.95557 * 27 13 12 44 44 H 1.08998 * 109.58442 * 173.39509 * 28 9 8 45 45 H 1.09002 * 109.59113 * 293.81971 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7234 1.2483 5 6 3.5739 -0.6959 1.2677 6 1 3.9191 0.3379 1.2559 7 8 4.0520 -1.3454 2.4473 8 6 4.1053 -1.4266 0.0306 9 7 3.5047 -0.8288 -1.1697 10 6 4.2812 -0.3850 -2.1778 11 8 3.7733 0.1070 -3.1632 12 6 5.7807 -0.5001 -2.0808 13 6 6.4097 0.0650 -3.3283 14 6 6.6537 -0.7582 -4.4127 15 6 7.2262 -0.2425 -5.5610 16 6 7.5659 1.0947 -5.6244 17 6 7.3271 1.9226 -4.5354 18 8 7.6604 3.2372 -4.5945 19 6 8.3229 3.6521 -5.6930 20 1 8.4931 2.9681 -6.5115 21 6 8.7858 4.9566 -5.7722 22 7 8.5790 5.7896 -4.7751 23 14 9.7031 5.5315 -7.2946 24 1 8.8258 5.3893 -8.4843 25 1 10.0895 6.9560 -7.1313 26 1 10.9237 4.7060 -7.4782 27 6 6.7471 1.4026 -3.3855 28 6 2.0414 -0.7235 -1.2497 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5148 0.8893 31 1 -0.3633 0.5127 -0.8906 32 1 1.6582 -0.2250 2.1389 33 1 1.6969 -1.7576 1.2348 34 1 5.0159 -1.3672 2.5212 35 1 3.8377 -2.4818 0.0863 36 1 5.1898 -1.3267 -0.0151 37 1 6.1325 0.0572 -1.2126 38 1 6.0586 -1.5489 -1.9764 39 1 6.3927 -1.8051 -4.3642 40 1 7.4116 -0.8869 -6.4077 41 1 8.0171 1.4960 -6.5198 42 1 8.9025 6.7023 -4.8307 43 1 6.5598 2.0441 -2.5370 44 1 1.7639 -0.1575 -2.1388 45 1 1.6054 -1.7213 -1.2983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837167969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:19 Heat of formation + Delta-G solvation = -119.887220 kcal Electronic energy + Delta-G solvation = -26527.253130 eV Core-core repulsion = 22701.990137 eV Total energy + Delta-G solvation = -3825.262993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53606 -40.66864 -39.26708 -38.14807 -36.88613 -35.02719 -34.33527 -33.37635 -31.23043 -30.91159 -29.09377 -27.59026 -27.24855 -26.13664 -23.30278 -23.06910 -22.75731 -21.40917 -20.21949 -19.41847 -18.74704 -18.26630 -18.03804 -17.08213 -16.87041 -16.63498 -16.22195 -16.10447 -15.90760 -15.53142 -15.49704 -15.04209 -14.98737 -14.43128 -14.26798 -14.05357 -13.91795 -13.80474 -13.58406 -13.03635 -12.98883 -12.90199 -12.81366 -12.77568 -12.45554 -12.38088 -12.23258 -12.13593 -11.90934 -11.77929 -11.61991 -11.20989 -11.17369 -10.88353 -10.77823 -9.66566 -9.64517 -8.98563 -8.47311 -6.16130 0.50597 0.75150 1.33575 1.44846 1.50276 1.58091 1.92162 2.17596 2.81798 3.11242 3.21360 3.42102 3.64989 3.72642 3.78979 3.86478 3.89098 4.07323 4.09212 4.18754 4.29962 4.36686 4.38597 4.52847 4.56532 4.58105 4.62455 4.66804 4.72700 4.77307 4.83715 4.91197 5.03347 5.06475 5.12159 5.17938 5.24548 5.29551 5.35222 5.49318 5.64189 5.71879 5.74349 6.02247 6.20248 6.32613 6.86751 6.97060 7.15155 7.78484 8.76079 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002643 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.973773 B =10589.934943 C =10911.254669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.058 0.942 4 C -0.105 4.105 5 C 0.093 3.907 6 H 0.052 0.948 7 O -0.572 6.572 8 C 0.074 3.926 9 N -0.609 5.609 10 C 0.515 3.485 11 O -0.576 6.576 12 C -0.090 4.090 13 C -0.026 4.026 14 C -0.180 4.180 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.113 3.887 18 O -0.235 6.235 19 C -0.415 4.415 20 H 0.100 0.900 21 C -0.023 4.023 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.259 1.259 25 H -0.270 1.270 26 H -0.255 1.255 27 C -0.193 4.193 28 C 0.110 3.890 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.399 0.601 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.273 0.727 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.146 -19.113 12.674 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.077 0.923 4 C -0.142 4.142 5 C 0.033 3.967 6 H 0.070 0.930 7 O -0.379 6.379 8 C -0.048 4.048 9 N -0.344 5.344 10 C 0.304 3.696 11 O -0.455 6.455 12 C -0.129 4.129 13 C -0.027 4.027 14 C -0.199 4.199 15 C -0.091 4.091 16 C -0.266 4.266 17 C 0.063 3.937 18 O -0.142 6.142 19 C -0.492 4.492 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.561 5.561 23 Si 0.838 3.162 24 H -0.184 1.184 25 H -0.195 1.195 26 H -0.179 1.179 27 C -0.212 4.212 28 C -0.012 4.012 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.249 0.751 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.123 0.877 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.042 -18.547 12.499 24.942 hybrid contribution 0.944 1.121 -0.858 1.698 sum -10.098 -17.425 11.642 23.262 Atomic orbital electron populations 1.21722 0.92538 1.03086 1.02482 1.21400 0.97471 0.99110 0.93849 0.92324 1.21573 0.93070 1.02024 0.97542 1.22086 0.95414 0.95095 0.84125 0.92961 1.86496 1.28977 1.80889 1.41579 1.22717 1.00274 0.98671 0.83170 1.48078 1.06877 1.61101 1.18295 1.20989 0.90040 0.76497 0.82045 1.90745 1.76229 1.45460 1.33066 1.20744 0.89706 1.05612 0.96824 1.19176 0.95958 0.91430 0.96107 1.20968 1.05041 1.00523 0.93346 1.21137 0.95931 0.93412 0.98607 1.21306 1.10161 0.95805 0.99347 1.19867 0.94339 0.84520 0.95018 1.83932 1.67238 1.20325 1.42657 1.21792 1.34699 0.97666 0.94997 0.88244 1.26611 0.98131 0.94655 1.02664 1.70183 1.45966 1.06266 1.33648 0.84645 0.78308 0.77803 0.75414 1.18356 1.19458 1.17935 1.20197 1.08093 0.96151 0.96793 1.21763 0.79145 1.01576 0.98702 0.91031 0.91376 0.92654 0.90849 0.90148 0.75076 0.88750 0.87101 0.86170 0.83834 0.83514 0.83644 0.86409 0.91835 0.87712 0.91392 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.20 71.98 0.66 -1.11 16 2 C -0.10 -1.57 2.87 -10.71 -0.03 -1.60 16 3 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.10 -1.41 4.83 30.73 0.15 -1.26 16 5 C 0.09 1.21 3.64 30.78 0.11 1.32 16 6 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 7 O -0.57 -6.75 13.33 -148.98 -1.99 -8.73 16 8 C 0.07 0.87 5.96 86.36 0.51 1.39 16 9 N -0.61 -12.11 2.97 -818.93 -2.43 -14.54 16 10 C 0.51 14.33 7.69 87.66 0.67 15.00 16 11 O -0.58 -22.70 15.45 -3.04 -0.05 -22.75 16 12 C -0.09 -2.10 4.18 29.10 0.12 -1.97 16 13 C -0.03 -0.92 4.37 -19.88 -0.09 -1.00 16 14 C -0.18 -5.95 9.70 22.30 0.22 -5.73 16 15 C -0.07 -2.67 10.04 22.25 0.22 -2.45 16 16 C -0.25 -11.47 9.17 22.39 0.21 -11.27 16 17 C 0.11 5.97 6.65 22.58 0.15 6.12 16 18 O -0.23 -14.84 9.76 -22.70 -0.22 -15.06 16 19 C -0.42 -25.20 9.49 67.92 0.64 -24.56 16 20 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 21 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 22 N -0.92 -58.19 13.67 21.61 0.30 -57.89 16 23 Si 1.02 44.09 29.55 68.60 2.03 46.11 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 27 C -0.19 -8.78 9.64 22.39 0.22 -8.57 16 28 C 0.11 2.12 5.72 86.36 0.49 2.62 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.40 1.40 9.08 -74.06 -0.67 0.73 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 0.85 5.93 -2.39 -0.01 0.83 16 37 H 0.12 2.32 7.64 -2.39 -0.02 2.30 16 38 H 0.14 2.08 7.88 -2.38 -0.02 2.06 16 39 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 40 H 0.15 4.18 8.06 -2.91 -0.02 4.15 16 41 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 42 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 43 H 0.10 4.77 8.06 -2.91 -0.02 4.74 16 44 H 0.07 1.73 7.00 -2.39 -0.02 1.71 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -85.13 368.83 2.70 -82.43 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.33 Total: 24.41 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 4.73 Total: -33.98 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -2.14 Total: -72.43 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -2.25 Total: -46.54 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -85.13 2.70 -82.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837167969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.453 kcal (2) G-P(sol) polarization free energy of solvation -85.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds