Wall clock time and date at job start Tue Mar 31 2020 13:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49700 * 2 1 4 4 C 1.53045 * 109.49737 * 239.94231 * 2 1 3 5 5 C 1.53110 * 109.50259 * 178.68634 * 4 2 1 6 6 H 1.09006 * 109.48513 * 301.37640 * 5 4 2 7 7 O 1.42895 * 109.51115 * 181.31476 * 5 4 2 8 8 C 1.53182 * 109.33254 * 61.33760 * 5 4 2 9 9 N 1.46930 * 108.77848 * 305.36326 * 8 5 4 10 10 C 1.34772 * 120.63184 * 233.63084 * 9 8 5 11 11 O 1.21283 * 119.99867 * 179.97438 * 10 9 8 12 12 C 1.50704 * 120.00208 * 359.97438 * 10 9 8 13 13 C 1.50696 * 109.47012 * 179.97438 * 12 10 9 14 14 C 1.38326 * 119.96558 * 269.71743 * 13 12 10 15 15 C 1.38277 * 120.13418 * 179.76932 * 14 13 12 16 16 C 1.38118 * 120.07374 * 0.51312 * 15 14 13 17 17 C 1.38864 * 119.92872 * 359.74090 * 16 15 14 18 18 O 1.35752 * 120.06743 * 180.02562 * 17 16 15 19 19 C 1.34821 * 117.00347 * 354.45170 * 18 17 16 20 20 H 1.08002 * 120.00262 * 5.05579 * 19 18 17 21 21 C 1.38651 * 120.00370 * 185.05230 * 19 18 17 22 22 N 1.31561 * 119.99667 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00333 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46927 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47055 * 120.00164 * 23 21 19 26 26 H 1.48503 * 109.46809 * 239.99855 * 23 21 19 27 27 C 1.38078 * 119.96462 * 90.00227 * 13 12 10 28 28 C 1.46922 * 118.73492 * 53.60939 * 9 8 5 29 29 H 1.08994 * 109.46841 * 299.99562 * 1 2 3 30 30 H 1.09000 * 109.47315 * 59.99281 * 1 2 3 31 31 H 1.08994 * 109.47062 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.45705 * 298.66968 * 4 2 1 33 33 H 1.09000 * 109.46150 * 58.62496 * 4 2 1 34 34 H 0.96703 * 113.99913 * 180.12646 * 7 5 4 35 35 H 1.09002 * 109.58381 * 185.57801 * 8 5 4 36 36 H 1.09000 * 109.58979 * 65.15455 * 8 5 4 37 37 H 1.09006 * 109.46842 * 299.99971 * 12 10 9 38 38 H 1.09001 * 109.46998 * 59.99238 * 12 10 9 39 39 H 1.07993 * 119.92939 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.96409 * 180.23737 * 15 14 13 41 41 H 1.08001 * 120.04129 * 179.72703 * 16 15 14 42 42 H 0.97004 * 119.99911 * 179.97438 * 22 21 19 43 43 H 1.08005 * 120.03576 * 359.94735 * 27 13 12 44 44 H 1.09003 * 109.58669 * 186.60083 * 28 9 8 45 45 H 1.09008 * 109.70416 * 66.24872 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7226 -1.2487 5 6 3.5715 -0.6941 -1.2655 6 1 3.9161 0.3400 -1.2536 7 8 4.0480 -1.3419 -2.4467 8 6 4.1059 -1.4254 -0.0302 9 7 3.5047 -0.8281 1.1701 10 6 4.2808 -0.3842 2.1785 11 8 3.7724 0.1074 3.1638 12 6 5.7804 -0.4986 2.0820 13 6 6.4087 0.0664 3.3297 14 6 6.7515 1.4054 3.3852 15 6 7.3238 1.9286 4.5300 16 6 7.5647 1.1130 5.6183 17 6 7.2265 -0.2327 5.5639 18 8 7.4615 -1.0369 6.6321 19 6 8.1292 -0.4954 7.6707 20 1 8.3793 0.5552 7.6633 21 6 8.4948 -1.2873 8.7485 22 7 8.1896 -2.5670 8.7579 23 14 9.4193 -0.5370 10.1879 24 1 9.6386 0.9097 9.9352 25 1 8.6240 -0.7081 11.4303 26 1 10.7307 -1.2165 10.3421 27 6 6.6470 -0.7542 4.4143 28 6 2.0414 -0.7234 1.2497 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6972 -1.7569 -1.2357 33 1 1.6576 -0.2241 -2.1390 34 1 5.0118 -1.3626 -2.5224 35 1 5.1902 -1.3228 0.0146 36 1 3.8388 -2.4807 -0.0861 37 1 6.0587 -1.5474 1.9774 38 1 6.1322 0.0588 1.2139 39 1 6.5679 2.0443 2.5340 40 1 7.5868 2.9752 4.5717 41 1 8.0157 1.5212 6.5107 42 1 8.4457 -3.1212 9.5117 43 1 6.3825 -1.8004 4.3690 44 1 1.7634 -0.1577 2.1389 45 1 1.6038 -1.7206 1.2994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837167973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:22 Heat of formation + Delta-G solvation = -94.435711 kcal Electronic energy + Delta-G solvation = -26466.992259 eV Core-core repulsion = 22642.832926 eV Total energy + Delta-G solvation = -3824.159333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.53575 -39.04955 -38.22400 -36.55802 -36.10757 -34.14779 -32.35107 -31.92409 -30.57796 -29.21637 -27.87270 -26.74305 -25.48830 -24.97824 -22.42687 -21.66994 -21.25929 -20.45678 -19.17947 -17.63547 -17.55132 -17.17299 -16.94381 -16.11022 -15.72065 -15.26794 -15.05808 -14.85550 -14.38653 -14.33459 -14.18141 -13.66683 -13.56558 -13.45774 -13.16032 -13.03974 -12.67007 -12.43449 -12.29901 -12.24983 -12.15936 -11.83082 -11.52930 -11.25454 -11.22390 -11.13711 -10.95004 -10.80925 -10.72494 -10.58905 -10.58461 -10.40042 -9.69901 -9.29537 -8.80331 -8.77410 -8.03025 -7.17949 -6.40501 -3.99400 2.11123 2.42614 2.69176 2.84366 3.15254 3.16268 3.22005 3.71679 4.00038 4.30338 4.37994 4.47607 4.50261 4.64669 4.78938 4.84149 4.91309 5.03010 5.12885 5.19045 5.23324 5.25609 5.28570 5.40855 5.46060 5.49336 5.57257 5.64353 5.66152 5.77190 5.77750 5.84791 5.96095 5.98386 6.20881 6.31346 6.37665 6.69198 6.95292 7.11354 7.18031 7.27131 7.29860 7.40741 7.48126 7.86483 8.04810 8.22849 9.05429 9.76621 10.77919 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.002475 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.430225 B =11310.494477 C =11471.142928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 H 0.076 0.924 4 C -0.107 4.107 5 C 0.091 3.909 6 H 0.061 0.939 7 O -0.563 6.563 8 C 0.077 3.923 9 N -0.618 5.618 10 C 0.518 3.482 11 O -0.514 6.514 12 C -0.092 4.092 13 C -0.034 4.034 14 C -0.197 4.197 15 C -0.074 4.074 16 C -0.230 4.230 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.174 4.174 28 C 0.113 3.887 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.381 0.619 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 3.725 -21.190 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 H 0.095 0.905 4 C -0.145 4.145 5 C 0.031 3.969 6 H 0.079 0.921 7 O -0.368 6.368 8 C -0.047 4.047 9 N -0.355 5.355 10 C 0.306 3.694 11 O -0.388 6.388 12 C -0.132 4.132 13 C -0.035 4.035 14 C -0.216 4.216 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.102 3.898 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 C -0.010 4.010 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.228 0.772 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.161 3.483 -20.526 23.166 hybrid contribution 1.092 0.436 0.770 1.406 sum -9.068 3.919 -19.756 22.088 Atomic orbital electron populations 1.21736 0.93774 1.02317 1.02328 1.21473 0.96449 1.00181 0.94222 0.90521 1.21563 0.92839 1.01918 0.98181 1.22165 0.95509 0.95373 0.83858 0.92109 1.86535 1.27102 1.81232 1.41933 1.22467 0.99116 0.98290 0.84871 1.48043 1.06625 1.62558 1.18284 1.20795 0.89404 0.77141 0.82059 1.90756 1.75175 1.42659 1.30190 1.20624 0.90989 1.03234 0.98372 1.18653 0.97976 0.93659 0.93170 1.20329 1.08045 0.94353 0.98844 1.20671 0.97418 0.98207 0.92963 1.21180 1.09352 0.94058 1.00387 1.19271 0.92768 0.89835 0.87941 1.83975 1.65391 1.36983 1.22012 1.21365 1.34516 0.95370 0.95376 0.89074 1.25280 0.97493 0.95323 0.98489 1.70056 1.43908 1.04895 1.31117 0.85651 0.78838 0.78950 0.80003 1.19127 1.20179 1.20184 1.19938 1.07674 0.99608 0.92124 1.21676 0.79432 1.00902 0.98941 0.91981 0.92195 0.92276 0.90921 0.90904 0.77161 0.89188 0.90459 0.88289 0.88571 0.88028 0.87478 0.85595 0.92157 0.86870 0.88560 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.59 16 2 C -0.10 -0.82 2.87 -90.50 -0.26 -1.08 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -0.80 4.83 -26.65 -0.13 -0.93 16 5 C 0.09 0.66 3.62 -26.58 -0.10 0.57 16 6 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 7 O -0.56 -3.99 13.32 -35.23 -0.47 -4.46 16 8 C 0.08 0.60 5.97 -3.71 -0.02 0.57 16 9 N -0.62 -6.85 2.97 -172.77 -0.51 -7.37 16 10 C 0.52 7.67 7.69 -10.99 -0.08 7.59 16 11 O -0.51 -10.11 15.45 5.55 0.09 -10.02 16 12 C -0.09 -1.24 4.18 -29.03 -0.12 -1.36 16 13 C -0.03 -0.63 4.37 -104.65 -0.46 -1.08 16 14 C -0.20 -3.58 9.70 -39.53 -0.38 -3.96 16 15 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 16 C -0.23 -5.25 9.17 -39.39 -0.36 -5.61 16 17 C 0.16 3.92 6.65 -39.11 -0.26 3.66 16 18 O -0.18 -5.30 9.76 0.07 0.00 -5.30 16 19 C -0.39 -11.18 9.49 30.88 0.29 -10.89 16 20 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 23 Si 0.94 20.95 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 C -0.17 -3.86 9.65 -39.40 -0.38 -4.24 16 28 C 0.11 1.15 5.72 -3.72 -0.02 1.13 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.38 1.16 9.08 45.56 0.41 1.57 16 35 H 0.09 0.56 5.93 -51.93 -0.31 0.25 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 1.14 7.89 -51.93 -0.41 0.73 16 38 H 0.10 0.98 7.63 -51.93 -0.40 0.58 16 39 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.11 2.44 8.06 -52.48 -0.42 2.02 16 44 H 0.10 1.18 7.00 -51.93 -0.36 0.82 16 45 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -35.65 368.80 -7.88 -43.53 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.84 Total: 4.33 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -2.43 Total: -17.10 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.25 Total: -32.45 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.38 Total: -19.79 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.65 -7.88 -43.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837167973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.906 kcal (2) G-P(sol) polarization free energy of solvation -35.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds