Wall clock time and date at job start Tue Mar 31 2020 13:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49700 * 2 1 4 4 C 1.53045 * 109.49737 * 239.94231 * 2 1 3 5 5 C 1.53110 * 109.50259 * 178.68634 * 4 2 1 6 6 H 1.09006 * 109.48513 * 301.37640 * 5 4 2 7 7 O 1.42895 * 109.51115 * 181.31476 * 5 4 2 8 8 C 1.53182 * 109.33254 * 61.33760 * 5 4 2 9 9 N 1.46930 * 108.77848 * 305.36326 * 8 5 4 10 10 C 1.34772 * 120.63184 * 233.63084 * 9 8 5 11 11 O 1.21283 * 119.99867 * 179.97438 * 10 9 8 12 12 C 1.50704 * 120.00208 * 359.97438 * 10 9 8 13 13 C 1.50696 * 109.47012 * 179.97438 * 12 10 9 14 14 C 1.38326 * 119.96558 * 269.71743 * 13 12 10 15 15 C 1.38277 * 120.13418 * 179.76932 * 14 13 12 16 16 C 1.38118 * 120.07374 * 0.51312 * 15 14 13 17 17 C 1.38864 * 119.92872 * 359.74090 * 16 15 14 18 18 O 1.35752 * 120.06743 * 180.02562 * 17 16 15 19 19 C 1.34821 * 117.00347 * 354.45170 * 18 17 16 20 20 H 1.08002 * 120.00262 * 5.05579 * 19 18 17 21 21 C 1.38651 * 120.00370 * 185.05230 * 19 18 17 22 22 N 1.31561 * 119.99667 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00333 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46927 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47055 * 120.00164 * 23 21 19 26 26 H 1.48503 * 109.46809 * 239.99855 * 23 21 19 27 27 C 1.38078 * 119.96462 * 90.00227 * 13 12 10 28 28 C 1.46922 * 118.73492 * 53.60939 * 9 8 5 29 29 H 1.08994 * 109.46841 * 299.99562 * 1 2 3 30 30 H 1.09000 * 109.47315 * 59.99281 * 1 2 3 31 31 H 1.08994 * 109.47062 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.45705 * 298.66968 * 4 2 1 33 33 H 1.09000 * 109.46150 * 58.62496 * 4 2 1 34 34 H 0.96703 * 113.99913 * 180.12646 * 7 5 4 35 35 H 1.09002 * 109.58381 * 185.57801 * 8 5 4 36 36 H 1.09000 * 109.58979 * 65.15455 * 8 5 4 37 37 H 1.09006 * 109.46842 * 299.99971 * 12 10 9 38 38 H 1.09001 * 109.46998 * 59.99238 * 12 10 9 39 39 H 1.07993 * 119.92939 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.96409 * 180.23737 * 15 14 13 41 41 H 1.08001 * 120.04129 * 179.72703 * 16 15 14 42 42 H 0.97004 * 119.99911 * 179.97438 * 22 21 19 43 43 H 1.08005 * 120.03576 * 359.94735 * 27 13 12 44 44 H 1.09003 * 109.58669 * 186.60083 * 28 9 8 45 45 H 1.09008 * 109.70416 * 66.24872 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7226 -1.2487 5 6 3.5715 -0.6941 -1.2655 6 1 3.9161 0.3400 -1.2536 7 8 4.0480 -1.3419 -2.4467 8 6 4.1059 -1.4254 -0.0302 9 7 3.5047 -0.8281 1.1701 10 6 4.2808 -0.3842 2.1785 11 8 3.7724 0.1074 3.1638 12 6 5.7804 -0.4986 2.0820 13 6 6.4087 0.0664 3.3297 14 6 6.7515 1.4054 3.3852 15 6 7.3238 1.9286 4.5300 16 6 7.5647 1.1130 5.6183 17 6 7.2265 -0.2327 5.5639 18 8 7.4615 -1.0369 6.6321 19 6 8.1292 -0.4954 7.6707 20 1 8.3793 0.5552 7.6633 21 6 8.4948 -1.2873 8.7485 22 7 8.1896 -2.5670 8.7579 23 14 9.4193 -0.5370 10.1879 24 1 9.6386 0.9097 9.9352 25 1 8.6240 -0.7081 11.4303 26 1 10.7307 -1.2165 10.3421 27 6 6.6470 -0.7542 4.4143 28 6 2.0414 -0.7234 1.2497 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6972 -1.7569 -1.2357 33 1 1.6576 -0.2241 -2.1390 34 1 5.0118 -1.3626 -2.5224 35 1 5.1902 -1.3228 0.0146 36 1 3.8388 -2.4807 -0.0861 37 1 6.0587 -1.5474 1.9774 38 1 6.1322 0.0588 1.2139 39 1 6.5679 2.0443 2.5340 40 1 7.5868 2.9752 4.5717 41 1 8.0157 1.5212 6.5107 42 1 8.4457 -3.1212 9.5117 43 1 6.3825 -1.8004 4.3690 44 1 1.7634 -0.1577 2.1389 45 1 1.6038 -1.7206 1.2994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837167973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:22 Heat of formation + Delta-G solvation = -120.071896 kcal Electronic energy + Delta-G solvation = -26468.103927 eV Core-core repulsion = 22642.832926 eV Total energy + Delta-G solvation = -3825.271001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.53838 -40.66931 -39.26691 -38.14846 -36.87382 -35.02450 -34.33504 -33.37524 -31.22717 -30.91139 -29.09290 -27.59107 -27.25211 -26.14126 -23.29736 -23.04367 -22.76643 -21.39767 -20.21828 -19.41535 -18.75427 -18.26624 -18.02383 -17.08327 -16.86449 -16.64821 -16.19367 -16.09666 -15.87648 -15.53325 -15.51442 -15.04351 -14.96300 -14.47308 -14.19752 -14.11718 -13.89593 -13.80321 -13.59728 -13.04839 -13.00217 -12.88222 -12.80391 -12.77759 -12.48026 -12.35824 -12.23739 -12.08811 -11.89578 -11.76873 -11.61002 -11.20480 -11.14887 -10.88934 -10.78817 -9.67569 -9.63817 -8.98558 -8.47669 -6.16216 0.50585 0.74998 1.33706 1.42486 1.52602 1.58495 1.91211 2.17197 2.81716 3.11923 3.22895 3.41988 3.66069 3.73920 3.78397 3.86843 3.90249 4.08054 4.09413 4.19558 4.29502 4.36799 4.39024 4.53519 4.56386 4.58716 4.63567 4.67236 4.72876 4.78343 4.85106 4.92530 5.04002 5.07701 5.12609 5.18023 5.25547 5.29521 5.36559 5.49307 5.64245 5.71931 5.74286 6.02481 6.20247 6.32620 6.89776 6.97011 7.15003 7.78660 8.76209 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024186 B = 0.002475 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.430225 B =11310.494477 C =11471.142928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.107 4.107 5 C 0.098 3.902 6 H 0.065 0.935 7 O -0.574 6.574 8 C 0.071 3.929 9 N -0.609 5.609 10 C 0.515 3.485 11 O -0.576 6.576 12 C -0.090 4.090 13 C -0.026 4.026 14 C -0.180 4.180 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.112 3.888 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.252 1.252 25 H -0.269 1.269 26 H -0.266 1.266 27 C -0.193 4.193 28 C 0.108 3.892 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.399 0.601 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.118 0.882 42 H 0.272 0.728 43 H 0.105 0.895 44 H 0.069 0.931 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.934 5.535 -24.371 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.145 4.145 5 C 0.038 3.962 6 H 0.083 0.917 7 O -0.382 6.382 8 C -0.051 4.051 9 N -0.343 5.343 10 C 0.304 3.696 11 O -0.455 6.455 12 C -0.129 4.129 13 C -0.027 4.027 14 C -0.198 4.198 15 C -0.091 4.091 16 C -0.266 4.266 17 C 0.063 3.937 18 O -0.142 6.142 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.175 1.175 25 H -0.194 1.194 26 H -0.190 1.190 27 C -0.212 4.212 28 C -0.014 4.014 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.250 0.750 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.135 0.865 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.088 0.912 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.869 5.301 -23.814 26.318 hybrid contribution 0.860 -0.056 1.392 1.637 sum -9.009 5.245 -22.422 24.727 Atomic orbital electron populations 1.21733 0.92794 1.02812 1.02654 1.21365 0.97216 0.99430 0.93256 0.91152 1.21556 0.93374 1.01764 0.97782 1.22034 0.95158 0.95439 0.83594 0.91661 1.86514 1.29038 1.81159 1.41441 1.22745 1.00394 0.98416 0.83548 1.48064 1.06828 1.61056 1.18365 1.20994 0.90064 0.76625 0.81876 1.90746 1.76210 1.45893 1.32646 1.20743 0.89735 1.05127 0.97274 1.19177 0.96088 0.93687 0.93722 1.20959 1.04813 0.94538 0.99505 1.21132 0.96286 0.99666 0.92007 1.21301 1.10067 0.93602 1.01616 1.19870 0.94626 0.91024 0.88228 1.83934 1.67774 1.38882 1.23602 1.21863 1.34979 0.96103 0.95985 0.88232 1.26621 0.98309 0.95760 1.01483 1.70201 1.46443 1.06806 1.32649 0.84508 0.77371 0.78687 0.75473 1.17508 1.19403 1.19045 1.20208 1.08166 1.00104 0.92741 1.21767 0.79202 1.01297 0.99177 0.92540 0.90993 0.91732 0.91011 0.90362 0.75047 0.86860 0.89931 0.86159 0.83819 0.83490 0.83655 0.86461 0.91851 0.87715 0.91230 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.20 71.98 0.66 -0.97 16 2 C -0.09 -1.31 2.87 -10.72 -0.03 -1.34 16 3 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 4 C -0.11 -1.30 4.83 30.65 0.15 -1.15 16 5 C 0.10 1.07 3.62 30.69 0.11 1.18 16 6 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 7 O -0.57 -5.97 13.32 -148.98 -1.99 -7.95 16 8 C 0.07 0.86 5.97 86.36 0.52 1.37 16 9 N -0.61 -12.18 2.97 -818.92 -2.43 -14.62 16 10 C 0.51 14.33 7.69 87.66 0.67 15.00 16 11 O -0.58 -22.69 15.45 -3.04 -0.05 -22.73 16 12 C -0.09 -2.09 4.18 29.10 0.12 -1.97 16 13 C -0.03 -0.92 4.37 -19.88 -0.09 -1.00 16 14 C -0.18 -5.89 9.70 22.30 0.22 -5.67 16 15 C -0.07 -2.67 10.04 22.25 0.22 -2.44 16 16 C -0.25 -11.45 9.17 22.39 0.21 -11.25 16 17 C 0.11 5.97 6.65 22.58 0.15 6.12 16 18 O -0.23 -14.87 9.76 -22.68 -0.22 -15.09 16 19 C -0.41 -25.07 9.49 67.92 0.64 -24.43 16 20 H 0.10 5.58 5.20 -2.91 -0.02 5.56 16 21 C -0.02 -1.45 5.49 84.83 0.47 -0.99 16 22 N -0.92 -58.27 13.67 21.61 0.30 -57.97 16 23 Si 1.02 44.20 29.55 68.60 2.03 46.23 16 24 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 C -0.19 -8.78 9.65 22.39 0.22 -8.57 16 28 C 0.11 2.11 5.72 86.36 0.49 2.60 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.40 0.75 9.08 -74.06 -0.67 0.08 16 35 H 0.11 0.83 5.93 -2.39 -0.01 0.82 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.12 2.35 7.89 -2.38 -0.02 2.33 16 38 H 0.14 2.02 7.63 -2.39 -0.02 2.00 16 39 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 40 H 0.15 4.16 8.06 -2.91 -0.02 4.13 16 41 H 0.12 5.51 5.64 -2.91 -0.02 5.49 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.07 1.76 7.00 -2.39 -0.02 1.74 16 45 H 0.08 1.33 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -85.26 368.80 2.70 -82.56 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.33 Total: 23.07 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 4.73 Total: -33.50 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -2.14 Total: -72.59 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -2.25 Total: -45.78 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -85.26 2.70 -82.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837167973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.508 kcal (2) G-P(sol) polarization free energy of solvation -85.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds