Wall clock time and date at job start Tue Mar 31 2020 13:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.27526 * 2 1 4 4 C 1.54950 * 110.39079 * 237.85517 * 2 1 3 5 5 C 1.55449 * 100.99023 * 204.64855 * 4 2 1 6 6 C 1.54380 * 102.18734 * 34.03919 * 5 4 2 7 7 H 1.08995 * 109.83155 * 98.30070 * 6 5 4 8 8 C 1.53005 * 109.83049 * 219.18634 * 6 5 4 9 9 N 1.46502 * 109.46820 * 184.81485 * 8 6 5 10 10 C 1.34774 * 119.99675 * 179.97438 * 9 8 6 11 11 O 1.21277 * 120.00055 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99923 * 179.97438 * 10 9 8 13 13 C 1.50696 * 109.47141 * 179.97438 * 12 10 9 14 14 C 1.38335 * 119.96636 * 90.00068 * 13 12 10 15 15 C 1.38275 * 120.13733 * 179.97438 * 14 13 12 16 16 C 1.38129 * 120.07166 * 0.02562 * 15 14 13 17 17 C 1.38855 * 119.92815 * 359.97438 * 16 15 14 18 18 O 1.35751 * 120.06685 * 180.02562 * 17 16 15 19 19 C 1.34827 * 116.99902 * 354.46379 * 18 17 16 20 20 H 1.07998 * 120.00223 * 5.05391 * 19 18 17 21 21 C 1.38659 * 120.00110 * 185.06350 * 19 18 17 22 22 N 1.31557 * 119.99905 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00348 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46885 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47576 * 119.99138 * 23 21 19 26 26 H 1.48498 * 109.47224 * 240.00037 * 23 21 19 27 27 C 1.38079 * 119.96885 * 269.73039 * 13 12 10 28 28 O 1.43238 * 107.66153 * 338.74053 * 6 5 4 29 29 H 1.09006 * 109.46750 * 299.35750 * 1 2 3 30 30 H 1.08996 * 109.47117 * 59.35769 * 1 2 3 31 31 H 1.08999 * 109.47528 * 179.36304 * 1 2 3 32 32 H 1.09004 * 111.12184 * 322.51558 * 4 2 1 33 33 H 1.08998 * 111.12562 * 86.63079 * 4 2 1 34 34 H 1.08999 * 110.83479 * 275.89211 * 5 4 2 35 35 H 1.08999 * 110.92402 * 152.22650 * 5 4 2 36 36 H 1.08995 * 109.47034 * 304.80901 * 8 6 5 37 37 H 1.08994 * 109.47114 * 64.81324 * 8 6 5 38 38 H 0.96994 * 120.00245 * 359.97438 * 9 8 6 39 39 H 1.08995 * 109.47354 * 299.99508 * 12 10 9 40 40 H 1.09003 * 109.47193 * 59.99950 * 12 10 9 41 41 H 1.07991 * 119.92541 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.96415 * 179.97438 * 15 14 13 43 43 H 1.07993 * 120.03159 * 179.97438 * 16 15 14 44 44 H 0.96995 * 120.00436 * 179.97438 * 22 21 19 45 45 H 1.07999 * 120.02882 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7728 -1.2298 5 6 3.4731 -1.2023 -0.7172 6 6 3.2126 -1.4395 0.7859 7 1 3.0656 -2.5033 0.9723 8 6 4.3991 -0.9281 1.6054 9 7 4.1961 -1.2598 3.0179 10 6 5.1202 -0.9057 3.9327 11 8 6.1199 -0.3128 3.5867 12 6 4.9111 -1.2464 5.3858 13 6 6.0804 -0.7439 6.1928 14 6 6.0540 0.5319 6.7270 15 6 7.1247 0.9963 7.4685 16 6 8.2247 0.1874 7.6776 17 6 8.2542 -1.0937 7.1427 18 8 9.3335 -1.8912 7.3469 19 6 10.3901 -1.3415 7.9787 20 1 10.3228 -0.3369 8.3695 21 6 11.5632 -2.0657 8.1266 22 7 11.6452 -3.2894 7.6508 23 14 13.0274 -1.3038 9.0014 24 1 12.6813 0.0726 9.4388 25 1 13.3790 -2.1264 10.1866 26 1 14.1858 -1.2512 8.0738 27 6 7.1747 -1.5593 6.4030 28 8 2.0286 -0.7158 1.1412 29 1 -0.3633 0.5039 0.8958 30 1 -0.3633 0.5238 -0.8841 31 1 -0.3634 -1.0276 -0.0114 32 1 1.4504 -1.6422 -1.4503 33 1 2.1507 -0.1204 -2.0992 34 1 4.2005 -0.4038 -0.8635 35 1 3.8009 -2.1209 -1.2038 36 1 5.3158 -1.3985 1.2499 37 1 4.4786 0.1532 1.4939 38 1 3.3967 -1.7343 3.2946 39 1 3.9948 -0.7753 5.7413 40 1 4.8309 -2.3277 5.4976 41 1 5.1950 1.1660 6.5653 42 1 7.1013 1.9929 7.8840 43 1 9.0607 0.5509 8.2565 44 1 12.4659 -3.7960 7.7539 45 1 7.1926 -2.5569 5.9897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837281750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:16 Heat of formation + Delta-G solvation = -95.365405 kcal Electronic energy + Delta-G solvation = -25654.716169 eV Core-core repulsion = 21830.516522 eV Total energy + Delta-G solvation = -3824.199647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.27271 -39.48584 -38.62498 -36.42305 -34.85019 -32.70137 -32.43009 -32.16463 -31.69435 -29.18832 -28.40602 -26.68321 -25.17900 -24.07291 -22.07142 -21.60856 -21.22035 -20.92582 -20.00867 -17.65556 -17.44272 -17.04795 -16.80964 -16.16955 -15.89784 -15.34654 -14.90534 -14.62875 -14.38020 -14.31397 -14.00788 -13.76808 -13.48821 -13.43977 -13.12853 -13.10767 -12.65607 -12.47557 -12.38282 -12.30297 -12.15050 -11.72278 -11.61693 -11.42542 -11.30409 -11.22024 -11.20694 -10.77905 -10.67675 -10.52335 -10.36649 -9.90593 -9.63889 -9.24713 -9.02780 -8.76423 -7.96726 -7.12398 -6.36730 -3.95401 2.19063 2.48740 2.88554 3.13506 3.17916 3.19579 3.24555 3.46916 4.02501 4.03479 4.29089 4.31340 4.62926 4.67546 4.74430 4.89871 4.94281 5.02099 5.10189 5.13205 5.19012 5.27424 5.28887 5.33057 5.36897 5.47311 5.56565 5.58299 5.67930 5.75667 5.77330 5.81588 5.85071 6.03072 6.27092 6.42699 6.43393 6.68212 6.75522 7.01347 7.16348 7.36768 7.46147 7.52726 7.57992 7.92625 8.08840 8.43165 9.09317 9.81085 10.81839 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026457 B = 0.002113 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.051330 B =13249.315709 C =13837.650124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.070 3.930 7 H 0.088 0.912 8 C 0.112 3.888 9 N -0.733 5.733 10 C 0.513 3.487 11 O -0.522 6.522 12 C -0.094 4.094 13 C -0.032 4.032 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.154 3.846 18 O -0.181 6.181 19 C -0.389 4.389 20 H 0.092 0.908 21 C 0.037 3.963 22 N -0.865 5.865 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.174 4.174 28 O -0.371 6.371 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.401 0.599 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.678 4.009 -15.372 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 H 0.088 0.912 4 C -0.189 4.189 5 C -0.187 4.187 6 C 0.012 3.988 7 H 0.105 0.895 8 C -0.013 4.013 9 N -0.387 5.387 10 C 0.299 3.701 11 O -0.396 6.396 12 C -0.133 4.133 13 C -0.032 4.032 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.251 4.251 17 C 0.101 3.899 18 O -0.085 6.085 19 C -0.465 4.465 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.501 5.501 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.194 4.194 28 O -0.291 6.291 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.235 0.765 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.793 4.032 -15.485 26.237 hybrid contribution 0.514 0.232 0.303 0.640 sum -20.279 4.263 -15.182 25.689 Atomic orbital electron populations 1.21877 0.93618 1.02792 1.02494 1.22983 0.94900 0.95709 0.84760 0.91175 1.23349 0.96038 1.00966 0.98550 1.23126 0.98072 1.03324 0.94192 1.22984 0.85294 0.96564 0.93969 0.89465 1.21709 0.97150 1.01202 0.81200 1.45913 1.24412 1.61293 1.07113 1.20758 0.82696 0.78724 0.87880 1.90755 1.27948 1.39520 1.81375 1.20584 0.98908 1.03094 0.90757 1.18676 0.93607 0.94170 0.96786 1.20357 0.99834 0.95889 1.05422 1.20677 0.93235 0.98109 0.97327 1.21169 1.00532 0.95642 1.07713 1.19273 0.88622 0.89665 0.92321 1.83974 1.20673 1.36036 1.67798 1.21364 0.89677 1.00747 1.34752 0.89092 1.25277 0.98035 0.95727 0.97607 1.70051 1.27532 1.09333 1.43156 0.85652 0.80179 0.78918 0.78693 1.19136 1.20224 1.20219 1.19945 0.93665 1.00800 1.04963 1.88470 1.41581 1.64784 1.34274 0.91759 0.91286 0.91933 0.90195 0.89795 0.89866 0.89487 0.90548 0.91275 0.76470 0.88385 0.88293 0.87950 0.87510 0.85642 0.92210 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.62 37.16 0.36 -0.49 16 2 C 0.07 0.51 4.07 -25.70 -0.10 0.40 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.15 -0.79 6.58 -24.40 -0.16 -0.95 16 5 C -0.15 -0.89 6.56 -24.71 -0.16 -1.05 16 6 C 0.07 0.55 3.56 -26.01 -0.09 0.46 16 7 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 8 C 0.11 1.18 5.21 -4.04 -0.02 1.16 16 9 N -0.73 -8.43 5.53 -60.29 -0.33 -8.76 16 10 C 0.51 7.96 7.82 -10.99 -0.09 7.87 16 11 O -0.52 -10.73 16.03 5.56 0.09 -10.64 16 12 C -0.09 -1.33 5.83 -29.04 -0.17 -1.50 16 13 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 14 C -0.20 -3.72 9.70 -39.53 -0.38 -4.10 16 15 C -0.08 -1.51 10.04 -39.61 -0.40 -1.90 16 16 C -0.23 -5.40 9.17 -39.39 -0.36 -5.76 16 17 C 0.15 3.98 6.65 -39.11 -0.26 3.72 16 18 O -0.18 -5.41 9.76 0.05 0.00 -5.41 16 19 C -0.39 -11.33 9.49 30.89 0.29 -11.03 16 20 H 0.09 2.47 5.20 -52.49 -0.27 2.19 16 21 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 22 N -0.87 -26.16 13.67 55.48 0.76 -25.40 16 23 Si 0.94 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 27 C -0.17 -3.96 9.64 -39.39 -0.38 -4.34 16 28 O -0.37 -3.38 10.67 -35.23 -0.38 -3.76 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.38 8.06 -51.93 -0.42 -0.04 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.50 7.85 -51.93 -0.41 0.10 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 3.55 8.47 -40.82 -0.35 3.20 16 39 H 0.10 1.10 8.09 -51.93 -0.42 0.68 16 40 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.13 2.90 5.64 -52.49 -0.30 2.61 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.11 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -35.97 377.48 -8.47 -44.43 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.79 Total: 5.22 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -2.48 Total: -17.62 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.43 Total: -34.16 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.29 Total: -19.80 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.97 -8.47 -44.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837281750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.931 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds