Wall clock time and date at job start Tue Mar 31 2020 13:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.27526 * 2 1 4 4 C 1.54950 * 110.39079 * 237.85517 * 2 1 3 5 5 C 1.55449 * 100.99023 * 204.64855 * 4 2 1 6 6 C 1.54380 * 102.18734 * 34.03919 * 5 4 2 7 7 H 1.08995 * 109.83155 * 98.30070 * 6 5 4 8 8 C 1.53005 * 109.83049 * 219.18634 * 6 5 4 9 9 N 1.46502 * 109.46820 * 184.81485 * 8 6 5 10 10 C 1.34774 * 119.99675 * 179.97438 * 9 8 6 11 11 O 1.21277 * 120.00055 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99923 * 179.97438 * 10 9 8 13 13 C 1.50696 * 109.47141 * 179.97438 * 12 10 9 14 14 C 1.38335 * 119.96636 * 90.00068 * 13 12 10 15 15 C 1.38275 * 120.13733 * 179.97438 * 14 13 12 16 16 C 1.38129 * 120.07166 * 0.02562 * 15 14 13 17 17 C 1.38855 * 119.92815 * 359.97438 * 16 15 14 18 18 O 1.35751 * 120.06685 * 180.02562 * 17 16 15 19 19 C 1.34827 * 116.99902 * 354.46379 * 18 17 16 20 20 H 1.07998 * 120.00223 * 5.05391 * 19 18 17 21 21 C 1.38659 * 120.00110 * 185.06350 * 19 18 17 22 22 N 1.31557 * 119.99905 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00348 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46885 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47576 * 119.99138 * 23 21 19 26 26 H 1.48498 * 109.47224 * 240.00037 * 23 21 19 27 27 C 1.38079 * 119.96885 * 269.73039 * 13 12 10 28 28 O 1.43238 * 107.66153 * 338.74053 * 6 5 4 29 29 H 1.09006 * 109.46750 * 299.35750 * 1 2 3 30 30 H 1.08996 * 109.47117 * 59.35769 * 1 2 3 31 31 H 1.08999 * 109.47528 * 179.36304 * 1 2 3 32 32 H 1.09004 * 111.12184 * 322.51558 * 4 2 1 33 33 H 1.08998 * 111.12562 * 86.63079 * 4 2 1 34 34 H 1.08999 * 110.83479 * 275.89211 * 5 4 2 35 35 H 1.08999 * 110.92402 * 152.22650 * 5 4 2 36 36 H 1.08995 * 109.47034 * 304.80901 * 8 6 5 37 37 H 1.08994 * 109.47114 * 64.81324 * 8 6 5 38 38 H 0.96994 * 120.00245 * 359.97438 * 9 8 6 39 39 H 1.08995 * 109.47354 * 299.99508 * 12 10 9 40 40 H 1.09003 * 109.47193 * 59.99950 * 12 10 9 41 41 H 1.07991 * 119.92541 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.96415 * 179.97438 * 15 14 13 43 43 H 1.07993 * 120.03159 * 179.97438 * 16 15 14 44 44 H 0.96995 * 120.00436 * 179.97438 * 22 21 19 45 45 H 1.07999 * 120.02882 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7728 -1.2298 5 6 3.4731 -1.2023 -0.7172 6 6 3.2126 -1.4395 0.7859 7 1 3.0656 -2.5033 0.9723 8 6 4.3991 -0.9281 1.6054 9 7 4.1961 -1.2598 3.0179 10 6 5.1202 -0.9057 3.9327 11 8 6.1199 -0.3128 3.5867 12 6 4.9111 -1.2464 5.3858 13 6 6.0804 -0.7439 6.1928 14 6 6.0540 0.5319 6.7270 15 6 7.1247 0.9963 7.4685 16 6 8.2247 0.1874 7.6776 17 6 8.2542 -1.0937 7.1427 18 8 9.3335 -1.8912 7.3469 19 6 10.3901 -1.3415 7.9787 20 1 10.3228 -0.3369 8.3695 21 6 11.5632 -2.0657 8.1266 22 7 11.6452 -3.2894 7.6508 23 14 13.0274 -1.3038 9.0014 24 1 12.6813 0.0726 9.4388 25 1 13.3790 -2.1264 10.1866 26 1 14.1858 -1.2512 8.0738 27 6 7.1747 -1.5593 6.4030 28 8 2.0286 -0.7158 1.1412 29 1 -0.3633 0.5039 0.8958 30 1 -0.3633 0.5238 -0.8841 31 1 -0.3634 -1.0276 -0.0114 32 1 1.4504 -1.6422 -1.4503 33 1 2.1507 -0.1204 -2.0992 34 1 4.2005 -0.4038 -0.8635 35 1 3.8009 -2.1209 -1.2038 36 1 5.3158 -1.3985 1.2499 37 1 4.4786 0.1532 1.4939 38 1 3.3967 -1.7343 3.2946 39 1 3.9948 -0.7753 5.7413 40 1 4.8309 -2.3277 5.4976 41 1 5.1950 1.1660 6.5653 42 1 7.1013 1.9929 7.8840 43 1 9.0607 0.5509 8.2565 44 1 12.4659 -3.7960 7.7539 45 1 7.1926 -2.5569 5.9897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837281750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:15 Heat of formation + Delta-G solvation = -120.467258 kcal Electronic energy + Delta-G solvation = -25655.804667 eV Core-core repulsion = 21830.516522 eV Total energy + Delta-G solvation = -3825.288145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22388 -40.71836 -40.13011 -38.20256 -35.89485 -34.34488 -33.57732 -33.23202 -32.62941 -30.90537 -29.44176 -27.91209 -27.18108 -24.81200 -23.28145 -22.79962 -22.56725 -21.64311 -21.29267 -19.51170 -18.82104 -18.12316 -17.96273 -17.02150 -16.88780 -16.74607 -16.55475 -16.08641 -15.90607 -15.52618 -15.23874 -15.01483 -14.81227 -14.47969 -14.30417 -14.08424 -13.97984 -13.78216 -13.58792 -13.14400 -12.99152 -12.95082 -12.73743 -12.65556 -12.51955 -12.37605 -12.22537 -12.17106 -12.08092 -11.76486 -11.68274 -11.21082 -10.95612 -10.79804 -10.51930 -10.10568 -9.63751 -8.97898 -8.47307 -6.15679 0.52027 0.75423 1.33557 1.42677 1.52582 1.67878 2.16341 2.21277 2.77247 2.86936 3.17741 3.44785 3.51907 3.70446 3.81565 3.84721 4.08914 4.10803 4.15079 4.20651 4.31872 4.35348 4.43546 4.45842 4.54239 4.58055 4.64519 4.65236 4.73765 4.80744 4.86917 4.91414 5.05923 5.07468 5.10141 5.13216 5.26969 5.30796 5.33387 5.44234 5.64956 5.72648 5.75533 6.02880 6.09418 6.23159 6.58190 6.97280 7.30685 7.78959 8.76574 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026457 B = 0.002113 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.051330 B =13249.315709 C =13837.650124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 H 0.064 0.936 4 C -0.144 4.144 5 C -0.149 4.149 6 C 0.075 3.925 7 H 0.100 0.900 8 C 0.110 3.890 9 N -0.714 5.714 10 C 0.512 3.488 11 O -0.582 6.582 12 C -0.091 4.091 13 C -0.025 4.025 14 C -0.182 4.182 15 C -0.074 4.074 16 C -0.247 4.247 17 C 0.112 3.888 18 O -0.234 6.234 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.026 4.026 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.252 1.252 25 H -0.265 1.265 26 H -0.269 1.269 27 C -0.193 4.193 28 O -0.389 6.389 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.417 0.583 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.118 0.882 44 H 0.272 0.728 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.363 5.499 -15.993 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.082 0.918 4 C -0.181 4.181 5 C -0.187 4.187 6 C 0.018 3.982 7 H 0.118 0.882 8 C -0.014 4.014 9 N -0.367 5.367 10 C 0.300 3.700 11 O -0.461 6.461 12 C -0.130 4.130 13 C -0.026 4.026 14 C -0.200 4.200 15 C -0.092 4.092 16 C -0.266 4.266 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.223 4.223 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.175 1.175 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.212 4.212 28 O -0.310 6.310 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.254 0.746 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.163 0.837 42 H 0.163 0.837 43 H 0.136 0.864 44 H 0.081 0.919 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.586 5.527 -16.126 29.101 hybrid contribution 1.011 -0.120 0.370 1.083 sum -22.575 5.407 -15.755 28.055 Atomic orbital electron populations 1.21866 0.92651 1.03004 1.02899 1.23167 0.95713 0.95493 0.84973 0.91795 1.23339 0.95271 1.01291 0.98202 1.23159 0.98629 1.03971 0.92959 1.22971 0.83933 0.96800 0.94543 0.88199 1.21796 0.98439 1.00306 0.80906 1.45776 1.23957 1.59832 1.07112 1.20953 0.82300 0.77981 0.88782 1.90745 1.30419 1.42642 1.82323 1.20696 0.98189 1.04993 0.89132 1.19198 0.93767 0.93827 0.95802 1.20971 1.00412 0.95852 1.02794 1.21130 0.92081 0.99219 0.96723 1.21291 1.01839 0.95354 1.08105 1.19872 0.88701 0.90983 0.94286 1.83933 1.22127 1.37998 1.70035 1.21868 0.90352 1.01450 1.35295 0.88252 1.26634 1.01119 0.96192 0.98341 1.70195 1.28821 1.11307 1.45720 0.84501 0.75410 0.78571 0.77503 1.17550 1.18995 1.19408 1.20221 0.94362 1.01449 1.05155 1.88445 1.41744 1.65087 1.35696 0.92613 0.89629 0.91805 0.89303 0.88412 0.90301 0.88056 0.91338 0.92853 0.74554 0.84076 0.85907 0.83703 0.83684 0.86404 0.91854 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.62 71.98 0.69 -0.66 16 2 C 0.06 0.76 4.07 31.26 0.13 0.89 16 3 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.14 -1.15 6.58 32.10 0.21 -0.94 16 5 C -0.15 -1.50 6.56 31.91 0.21 -1.29 16 6 C 0.08 1.04 3.56 31.06 0.11 1.16 16 7 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 8 C 0.11 2.21 5.21 86.38 0.45 2.66 16 9 N -0.71 -14.98 5.53 -463.07 -2.56 -17.54 16 10 C 0.51 15.01 7.82 87.66 0.69 15.69 16 11 O -0.58 -23.83 16.03 -3.02 -0.05 -23.88 16 12 C -0.09 -2.29 5.83 29.10 0.17 -2.12 16 13 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 14 C -0.18 -6.31 9.70 22.30 0.22 -6.09 16 15 C -0.07 -2.80 10.04 22.25 0.22 -2.57 16 16 C -0.25 -11.72 9.17 22.39 0.21 -11.52 16 17 C 0.11 6.03 6.65 22.58 0.15 6.18 16 18 O -0.23 -14.96 9.76 -22.72 -0.22 -15.18 16 19 C -0.41 -25.40 9.49 67.92 0.64 -24.75 16 20 H 0.10 5.65 5.20 -2.91 -0.02 5.63 16 21 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 22 N -0.92 -58.68 13.67 21.61 0.30 -58.38 16 23 Si 1.02 44.77 29.55 68.60 2.03 46.80 16 24 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 C -0.19 -8.99 9.64 22.39 0.22 -8.77 16 28 O -0.39 -6.34 10.67 -148.98 -1.59 -7.93 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.58 8.06 -2.38 -0.02 0.56 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.87 7.85 -2.39 -0.02 0.85 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.42 6.12 8.47 -92.71 -0.79 5.34 16 39 H 0.14 2.40 8.09 -2.39 -0.02 2.38 16 40 H 0.12 2.57 8.08 -2.39 -0.02 2.55 16 41 H 0.15 3.87 8.06 -2.92 -0.02 3.85 16 42 H 0.15 4.35 8.06 -2.91 -0.02 4.33 16 43 H 0.12 5.64 5.64 -2.91 -0.02 5.63 16 44 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 45 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -85.05 377.48 2.80 -82.25 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.21 Total: 28.09 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 4.69 Total: -34.23 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.26 Total: -75.92 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -1.86 Total: -46.99 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -85.05 2.80 -82.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837281750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.216 kcal (2) G-P(sol) polarization free energy of solvation -85.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds