Wall clock time and date at job start Tue Mar 31 2020 13:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.89492 * 2 1 4 4 C 1.54380 * 109.83295 * 239.06748 * 2 1 3 5 5 C 1.55300 * 102.25414 * 219.13316 * 4 2 1 6 6 C 1.54949 * 100.94354 * 34.12837 * 5 4 2 7 7 H 1.09001 * 110.30758 * 82.47300 * 6 5 4 8 8 C 1.52997 * 110.39471 * 204.59987 * 6 5 4 9 9 N 1.46497 * 109.47219 * 182.21875 * 8 6 5 10 10 C 1.34775 * 120.00359 * 179.97438 * 9 8 6 11 11 O 1.21275 * 120.00135 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.50700 * 109.47041 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93424 * 269.72916 * 13 12 10 15 15 C 1.38106 * 120.06757 * 179.72362 * 14 13 12 16 16 C 1.38876 * 119.92951 * 0.57273 * 15 14 13 17 17 O 1.35749 * 120.06619 * 179.68406 * 16 15 14 18 18 C 1.34836 * 116.99876 * 174.48623 * 17 16 15 19 19 H 1.07992 * 119.99843 * 5.05494 * 18 17 16 20 20 C 1.38653 * 119.99835 * 185.05320 * 18 17 16 21 21 N 1.31555 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99862 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47435 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47434 * 120.00162 * 22 20 18 25 25 H 1.48506 * 109.47262 * 239.99901 * 22 20 18 26 26 C 1.38874 * 119.86408 * 359.69975 * 16 15 14 27 27 C 1.38099 * 119.92935 * 0.02562 * 26 16 15 28 28 O 1.43237 * 109.82946 * 120.93037 * 2 1 3 29 29 H 1.08999 * 109.47649 * 300.52499 * 1 2 3 30 30 H 1.09002 * 109.47057 * 60.52158 * 1 2 3 31 31 H 1.08997 * 109.46844 * 180.51835 * 1 2 3 32 32 H 1.09005 * 110.84809 * 337.31999 * 4 2 1 33 33 H 1.08998 * 110.84738 * 100.94057 * 4 2 1 34 34 H 1.09004 * 111.12577 * 276.21284 * 5 4 2 35 35 H 1.08997 * 111.16615 * 152.06467 * 5 4 2 36 36 H 1.09004 * 109.46954 * 302.21809 * 8 6 5 37 37 H 1.08999 * 109.47334 * 62.21439 * 8 6 5 38 38 H 0.97006 * 119.99625 * 0.02562 * 9 8 6 39 39 H 1.08994 * 109.47495 * 300.00166 * 12 10 9 40 40 H 1.09003 * 109.46781 * 60.00354 * 12 10 9 41 41 H 1.07999 * 119.96441 * 359.97438 * 14 13 12 42 42 H 1.07996 * 120.03152 * 180.27820 * 15 14 13 43 43 H 0.97001 * 120.00003 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.03632 * 179.97438 * 26 16 15 45 45 H 1.08005 * 119.96466 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0538 -0.7465 -1.2457 5 6 3.2730 -1.5222 -0.6767 6 6 2.7747 -1.8444 0.7546 7 1 2.1400 -2.7305 0.7437 8 6 3.9611 -2.0536 1.6977 9 7 3.4685 -2.4086 3.0309 10 6 4.3406 -2.6417 4.0317 11 8 5.5333 -2.5571 3.8287 12 6 3.8338 -3.0063 5.4033 13 6 5.0024 -3.2137 6.3319 14 6 5.5643 -4.4705 6.4640 15 6 6.6390 -4.6625 7.3099 16 6 7.1477 -3.5945 8.0373 17 8 8.1999 -3.7814 8.8744 18 6 8.7169 -2.6837 9.4624 19 1 8.2435 -1.7231 9.3233 20 6 9.8562 -2.7883 10.2456 21 7 10.4325 -3.9586 10.4154 22 14 10.5720 -1.2676 11.0608 23 1 9.7434 -0.0845 10.7159 24 1 10.5812 -1.4536 12.5341 25 1 11.9610 -1.0556 10.5801 26 6 6.5777 -2.3349 7.9067 27 6 5.5069 -2.1481 7.0548 28 8 2.0159 -0.6926 1.1558 29 1 -0.3634 0.5219 0.8852 30 1 -0.3633 0.5057 -0.8946 31 1 -0.3633 -1.0276 0.0093 32 1 1.3013 -1.4349 -1.6303 33 1 2.3673 -0.0425 -2.0165 34 1 4.1621 -0.8921 -0.6506 35 1 3.4579 -2.4349 -1.2431 36 1 4.5906 -2.8579 1.3169 37 1 4.5435 -1.1342 1.7585 38 1 2.5145 -2.4767 3.1932 39 1 3.2050 -2.2016 5.7841 40 1 3.2508 -3.9254 5.3426 41 1 5.1648 -5.3018 5.9021 42 1 7.0801 -5.6433 7.4093 43 1 11.2298 -4.0318 10.9631 44 1 6.9709 -1.5023 8.4713 45 1 5.0629 -1.1688 6.9531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837287375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:26 Heat of formation + Delta-G solvation = -95.681835 kcal Electronic energy + Delta-G solvation = -25503.246529 eV Core-core repulsion = 21679.033160 eV Total energy + Delta-G solvation = -3824.213369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28521 -39.49950 -38.65190 -36.46086 -34.89405 -32.74110 -32.45999 -32.12037 -31.17134 -30.06381 -28.37611 -26.42143 -25.09576 -23.98548 -22.09533 -21.88594 -21.20864 -20.88516 -19.90767 -17.90115 -17.54248 -17.10272 -16.83249 -16.12257 -16.00727 -15.29806 -14.76266 -14.53966 -14.42785 -14.20041 -13.96652 -13.80472 -13.54571 -13.44997 -13.25821 -13.10933 -12.67798 -12.60427 -12.42798 -12.30855 -12.18726 -11.76104 -11.62700 -11.41391 -11.32739 -11.25626 -11.20765 -10.77932 -10.67260 -10.52526 -10.36258 -9.95121 -9.62315 -9.24380 -9.05899 -8.75618 -8.06184 -7.07762 -6.38086 -3.96373 2.33384 2.35272 2.87289 3.11812 3.17681 3.19200 3.24333 3.41132 3.98134 4.02971 4.27444 4.30065 4.62949 4.64086 4.69282 4.85321 4.88775 5.08000 5.09293 5.13724 5.16202 5.24656 5.29755 5.35240 5.39179 5.41692 5.47856 5.51657 5.65387 5.73577 5.76827 5.77846 5.82781 5.93713 6.30178 6.40465 6.50690 6.64542 6.79160 7.00325 7.13914 7.32545 7.46245 7.52279 7.57133 7.92871 8.07709 8.42367 9.07947 9.79287 10.80304 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026576 B = 0.001994 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.344375 B =14039.706107 C =14361.446541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.074 3.926 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.069 3.931 7 H 0.077 0.923 8 C 0.123 3.877 9 N -0.736 5.736 10 C 0.509 3.491 11 O -0.523 6.523 12 C -0.080 4.080 13 C -0.168 4.168 14 C -0.060 4.060 15 C -0.191 4.191 16 C 0.156 3.844 17 O -0.180 6.180 18 C -0.389 4.389 19 H 0.092 0.908 20 C 0.037 3.963 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.057 4.057 28 O -0.371 6.371 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.401 0.599 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.116 0.884 43 H 0.268 0.732 44 H 0.126 0.874 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.514 5.467 -21.868 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.098 0.902 4 C -0.189 4.189 5 C -0.188 4.188 6 C 0.012 3.988 7 H 0.095 0.905 8 C -0.001 4.001 9 N -0.390 5.390 10 C 0.295 3.705 11 O -0.397 6.397 12 C -0.120 4.120 13 C -0.169 4.169 14 C -0.079 4.079 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.251 4.251 27 C -0.075 4.075 28 O -0.291 6.291 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.235 0.765 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.144 0.856 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.326 5.301 -21.597 29.462 hybrid contribution -0.095 0.781 0.133 0.798 sum -19.422 6.082 -21.464 29.579 Atomic orbital electron populations 1.22142 0.94840 1.02573 1.02410 1.22735 0.94343 0.96449 0.84785 0.90231 1.23194 0.97744 0.99796 0.98135 1.23242 0.98902 1.01613 0.94999 1.23226 0.92365 0.89773 0.93469 0.90549 1.21437 0.94900 1.01477 0.82293 1.45981 1.10165 1.72878 1.09974 1.21051 0.86604 0.76401 0.86420 1.90742 1.15959 1.49725 1.83281 1.20402 0.97802 1.02980 0.90768 1.18648 1.00947 0.94400 1.02935 1.20401 0.94996 0.95711 0.96763 1.20151 1.00690 0.98190 1.02042 1.19376 0.88321 0.92974 0.89077 1.83977 1.39315 1.34607 1.50426 1.21377 1.09843 0.86909 1.28444 0.89047 1.25284 0.95594 0.98518 0.97236 1.70053 1.19671 1.23122 1.37104 0.85649 0.79043 0.79977 0.78760 1.19120 1.20205 1.20187 1.21107 1.00649 0.97974 1.05401 1.20519 0.95255 0.96797 0.94952 1.88494 1.70420 1.40074 1.30080 0.91810 0.91569 0.92210 0.90301 0.89865 0.89747 0.89473 0.90378 0.90969 0.76540 0.88989 0.89029 0.87398 0.86570 0.92167 0.85603 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.87 9.44 37.16 0.35 -0.52 16 2 C 0.07 0.48 4.16 -26.01 -0.11 0.37 16 3 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.15 -0.72 6.54 -24.79 -0.16 -0.88 16 5 C -0.15 -0.83 6.57 -24.48 -0.16 -0.99 16 6 C 0.07 0.51 3.47 -25.70 -0.09 0.42 16 7 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 8 C 0.12 1.22 5.39 -4.04 -0.02 1.20 16 9 N -0.74 -7.93 5.54 -60.30 -0.33 -8.27 16 10 C 0.51 7.45 7.82 -10.99 -0.09 7.37 16 11 O -0.52 -10.30 16.03 5.56 0.09 -10.21 16 12 C -0.08 -1.06 5.83 -29.03 -0.17 -1.23 16 13 C -0.17 -3.06 4.38 -104.58 -0.46 -3.52 16 14 C -0.06 -1.16 9.69 -39.61 -0.38 -1.54 16 15 C -0.19 -4.32 9.99 -39.39 -0.39 -4.71 16 16 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 17 O -0.18 -5.35 9.76 0.03 0.00 -5.35 16 18 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 19 H 0.09 2.47 5.20 -52.49 -0.27 2.20 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -26.06 13.67 55.48 0.76 -25.30 16 22 Si 0.94 21.23 29.55 -169.99 -5.02 16.21 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 26 C -0.23 -5.39 9.17 -39.40 -0.36 -5.75 16 27 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 28 O -0.37 -3.29 10.68 -35.23 -0.38 -3.67 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.32 7.85 -51.93 -0.41 -0.09 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 3.29 8.47 -40.82 -0.35 2.95 16 39 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.13 2.92 5.64 -52.48 -0.30 2.62 16 45 H 0.10 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -35.61 377.48 -8.48 -44.09 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.79 Total: 4.43 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.49 Total: -17.61 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.42 Total: -33.57 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.29 Total: -19.23 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.61 -8.48 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837287375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.595 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds