Wall clock time and date at job start Tue Mar 31 2020 13:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.89492 * 2 1 4 4 C 1.54380 * 109.83295 * 239.06748 * 2 1 3 5 5 C 1.55300 * 102.25414 * 219.13316 * 4 2 1 6 6 C 1.54949 * 100.94354 * 34.12837 * 5 4 2 7 7 H 1.09001 * 110.30758 * 82.47300 * 6 5 4 8 8 C 1.52997 * 110.39471 * 204.59987 * 6 5 4 9 9 N 1.46497 * 109.47219 * 182.21875 * 8 6 5 10 10 C 1.34775 * 120.00359 * 179.97438 * 9 8 6 11 11 O 1.21275 * 120.00135 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.50700 * 109.47041 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93424 * 269.72916 * 13 12 10 15 15 C 1.38106 * 120.06757 * 179.72362 * 14 13 12 16 16 C 1.38876 * 119.92951 * 0.57273 * 15 14 13 17 17 O 1.35749 * 120.06619 * 179.68406 * 16 15 14 18 18 C 1.34836 * 116.99876 * 174.48623 * 17 16 15 19 19 H 1.07992 * 119.99843 * 5.05494 * 18 17 16 20 20 C 1.38653 * 119.99835 * 185.05320 * 18 17 16 21 21 N 1.31555 * 119.99930 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99862 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47435 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47434 * 120.00162 * 22 20 18 25 25 H 1.48506 * 109.47262 * 239.99901 * 22 20 18 26 26 C 1.38874 * 119.86408 * 359.69975 * 16 15 14 27 27 C 1.38099 * 119.92935 * 0.02562 * 26 16 15 28 28 O 1.43237 * 109.82946 * 120.93037 * 2 1 3 29 29 H 1.08999 * 109.47649 * 300.52499 * 1 2 3 30 30 H 1.09002 * 109.47057 * 60.52158 * 1 2 3 31 31 H 1.08997 * 109.46844 * 180.51835 * 1 2 3 32 32 H 1.09005 * 110.84809 * 337.31999 * 4 2 1 33 33 H 1.08998 * 110.84738 * 100.94057 * 4 2 1 34 34 H 1.09004 * 111.12577 * 276.21284 * 5 4 2 35 35 H 1.08997 * 111.16615 * 152.06467 * 5 4 2 36 36 H 1.09004 * 109.46954 * 302.21809 * 8 6 5 37 37 H 1.08999 * 109.47334 * 62.21439 * 8 6 5 38 38 H 0.97006 * 119.99625 * 0.02562 * 9 8 6 39 39 H 1.08994 * 109.47495 * 300.00166 * 12 10 9 40 40 H 1.09003 * 109.46781 * 60.00354 * 12 10 9 41 41 H 1.07999 * 119.96441 * 359.97438 * 14 13 12 42 42 H 1.07996 * 120.03152 * 180.27820 * 15 14 13 43 43 H 0.97001 * 120.00003 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.03632 * 179.97438 * 26 16 15 45 45 H 1.08005 * 119.96466 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0250 0.0000 4 6 2.0538 -0.7465 -1.2457 5 6 3.2730 -1.5222 -0.6767 6 6 2.7747 -1.8444 0.7546 7 1 2.1400 -2.7305 0.7437 8 6 3.9611 -2.0536 1.6977 9 7 3.4685 -2.4086 3.0309 10 6 4.3406 -2.6417 4.0317 11 8 5.5333 -2.5571 3.8287 12 6 3.8338 -3.0063 5.4033 13 6 5.0024 -3.2137 6.3319 14 6 5.5643 -4.4705 6.4640 15 6 6.6390 -4.6625 7.3099 16 6 7.1477 -3.5945 8.0373 17 8 8.1999 -3.7814 8.8744 18 6 8.7169 -2.6837 9.4624 19 1 8.2435 -1.7231 9.3233 20 6 9.8562 -2.7883 10.2456 21 7 10.4325 -3.9586 10.4154 22 14 10.5720 -1.2676 11.0608 23 1 9.7434 -0.0845 10.7159 24 1 10.5812 -1.4536 12.5341 25 1 11.9610 -1.0556 10.5801 26 6 6.5777 -2.3349 7.9067 27 6 5.5069 -2.1481 7.0548 28 8 2.0159 -0.6926 1.1558 29 1 -0.3634 0.5219 0.8852 30 1 -0.3633 0.5057 -0.8946 31 1 -0.3633 -1.0276 0.0093 32 1 1.3013 -1.4349 -1.6303 33 1 2.3673 -0.0425 -2.0165 34 1 4.1621 -0.8921 -0.6506 35 1 3.4579 -2.4349 -1.2431 36 1 4.5906 -2.8579 1.3169 37 1 4.5435 -1.1342 1.7585 38 1 2.5145 -2.4767 3.1932 39 1 3.2050 -2.2016 5.7841 40 1 3.2508 -3.9254 5.3426 41 1 5.1648 -5.3018 5.9021 42 1 7.0801 -5.6433 7.4093 43 1 11.2298 -4.0318 10.9631 44 1 6.9709 -1.5023 8.4713 45 1 5.0629 -1.1688 6.9531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837287375.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:25 Heat of formation + Delta-G solvation = -120.517089 kcal Electronic energy + Delta-G solvation = -25504.323466 eV Core-core repulsion = 21679.033160 eV Total energy + Delta-G solvation = -3825.290306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16312 -40.70402 -40.12923 -38.21091 -35.87663 -34.39854 -33.23515 -33.14625 -32.35863 -31.77123 -29.26804 -27.88205 -26.87556 -24.71035 -23.63104 -22.65780 -22.47889 -21.60733 -21.13265 -19.84117 -18.86499 -18.16547 -17.92838 -17.14049 -16.75054 -16.56753 -16.32623 -15.91447 -15.80796 -15.51172 -15.24805 -15.08041 -14.69341 -14.45854 -14.40973 -14.24668 -13.96349 -13.86827 -13.59724 -13.15112 -12.98367 -12.85156 -12.71584 -12.65820 -12.49538 -12.32466 -12.25258 -12.12729 -12.08212 -11.73524 -11.68567 -11.17588 -10.91594 -10.73746 -10.49810 -10.06037 -9.75908 -8.89558 -8.47652 -6.15679 0.61855 0.67753 1.33428 1.42193 1.52360 1.74912 2.17199 2.25463 2.75304 2.86717 3.18150 3.52405 3.52849 3.77073 3.87785 3.88659 4.05803 4.12486 4.15068 4.19657 4.24949 4.39105 4.46240 4.48646 4.54335 4.60308 4.68582 4.72539 4.78812 4.81372 4.91286 4.91978 5.05128 5.09031 5.11627 5.15217 5.26504 5.31035 5.36714 5.48917 5.57036 5.71919 5.78924 6.03030 6.11694 6.23486 6.64321 6.96972 7.37420 7.78430 8.76076 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.026576 B = 0.001994 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.344375 B =14039.706107 C =14361.446541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.065 3.935 3 H 0.074 0.926 4 C -0.144 4.144 5 C -0.150 4.150 6 C 0.074 3.926 7 H 0.094 0.906 8 C 0.121 3.879 9 N -0.716 5.716 10 C 0.509 3.491 11 O -0.583 6.583 12 C -0.077 4.077 13 C -0.145 4.145 14 C -0.057 4.057 15 C -0.206 4.206 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.253 1.253 24 H -0.265 1.265 25 H -0.269 1.269 26 C -0.244 4.244 27 C -0.062 4.062 28 O -0.394 6.394 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.417 0.583 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.149 0.851 42 H 0.113 0.887 43 H 0.273 0.727 44 H 0.117 0.883 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.863 6.527 -24.143 34.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 H 0.092 0.908 4 C -0.181 4.181 5 C -0.188 4.188 6 C 0.017 3.983 7 H 0.111 0.889 8 C -0.003 4.003 9 N -0.369 5.369 10 C 0.297 3.703 11 O -0.462 6.462 12 C -0.117 4.117 13 C -0.146 4.146 14 C -0.075 4.075 15 C -0.225 4.225 16 C 0.061 3.939 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.840 3.160 23 H -0.177 1.177 24 H -0.190 1.190 25 H -0.194 1.194 26 C -0.263 4.263 27 C -0.080 4.080 28 O -0.314 6.314 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.254 0.746 39 H 0.143 0.857 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.132 0.868 43 H 0.082 0.918 44 H 0.134 0.866 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.786 6.367 -23.926 33.648 hybrid contribution 0.635 0.432 0.564 0.953 sum -22.151 6.799 -23.362 32.904 Atomic orbital electron populations 1.22114 0.93956 1.02775 1.02716 1.22902 0.95071 0.96279 0.84946 0.90757 1.23186 0.97466 0.99928 0.97550 1.23269 0.98962 1.02369 0.94170 1.23226 0.91510 0.90102 0.93469 0.88875 1.21501 0.96076 1.00379 0.82336 1.45821 1.10636 1.70871 1.09609 1.21196 0.85997 0.75741 0.87370 1.90746 1.18426 1.52794 1.84270 1.20525 0.96080 1.06396 0.88670 1.19266 1.00873 0.93169 1.01271 1.20890 0.93459 0.97705 0.95474 1.20452 1.01921 0.97540 1.02566 1.19933 0.88565 0.95054 0.90310 1.83937 1.41713 1.35418 1.52973 1.21856 1.10662 0.87382 1.29077 0.88341 1.26620 0.95595 1.02355 0.97650 1.70194 1.20791 1.25915 1.39054 0.84510 0.78189 0.75558 0.77788 1.17651 1.18963 1.19354 1.21219 1.01897 0.96861 1.06360 1.20931 0.94139 0.98992 0.93966 1.88458 1.70669 1.40685 1.31609 0.92772 0.90065 0.91976 0.89055 0.88763 0.90552 0.87888 0.90465 0.93155 0.74613 0.85692 0.84928 0.83360 0.86847 0.91827 0.86564 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.44 71.98 0.68 -0.64 16 2 C 0.07 0.71 4.16 31.06 0.13 0.83 16 3 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 4 C -0.14 -0.97 6.54 31.85 0.21 -0.76 16 5 C -0.15 -1.31 6.57 32.05 0.21 -1.10 16 6 C 0.07 0.90 3.47 31.26 0.11 1.01 16 7 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 8 C 0.12 2.18 5.39 86.38 0.47 2.65 16 9 N -0.72 -13.11 5.54 -463.07 -2.56 -15.68 16 10 C 0.51 13.29 7.82 87.66 0.69 13.98 16 11 O -0.58 -22.14 16.03 -3.02 -0.05 -22.19 16 12 C -0.08 -1.67 5.83 29.10 0.17 -1.50 16 13 C -0.14 -4.85 4.38 -19.83 -0.09 -4.93 16 14 C -0.06 -2.09 9.69 22.25 0.22 -1.87 16 15 C -0.21 -9.48 9.99 22.39 0.22 -9.26 16 16 C 0.11 5.99 6.65 22.58 0.15 6.14 16 17 O -0.23 -14.89 9.76 -22.79 -0.22 -15.11 16 18 C -0.41 -25.41 9.49 67.92 0.64 -24.77 16 19 H 0.10 5.62 5.20 -2.91 -0.02 5.60 16 20 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 21 N -0.92 -58.58 13.67 21.61 0.30 -58.29 16 22 Si 1.02 44.86 29.55 68.60 2.03 46.89 16 23 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 24 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 C -0.24 -11.63 9.17 22.39 0.21 -11.43 16 27 C -0.06 -2.38 9.69 22.25 0.22 -2.16 16 28 O -0.39 -6.12 10.68 -148.98 -1.59 -7.71 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 0.41 7.85 -2.38 -0.02 0.40 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 0.80 8.06 -2.38 -0.02 0.78 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.42 5.06 8.47 -92.70 -0.79 4.27 16 39 H 0.13 2.01 8.08 -2.39 -0.02 1.99 16 40 H 0.13 1.91 8.08 -2.39 -0.02 1.89 16 41 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 42 H 0.11 5.13 8.06 -2.91 -0.02 5.11 16 43 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 44 H 0.12 5.62 5.64 -2.91 -0.02 5.61 16 45 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -84.68 377.48 2.80 -81.88 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.21 Total: 25.04 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 4.69 Total: -34.84 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -2.27 Total: -73.97 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -1.86 Total: -45.01 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -84.68 2.80 -81.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837287375.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.635 kcal (2) G-P(sol) polarization free energy of solvation -84.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds