Wall clock time and date at job start Tue Mar 31 2020 13:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.55436 * 2 1 4 4 C 1.54998 * 110.61911 * 237.12063 * 2 1 3 5 5 C 1.54814 * 102.09218 * 204.32152 * 4 2 1 6 6 C 1.54094 * 104.18737 * 20.87568 * 5 4 2 7 7 H 1.08998 * 109.88011 * 242.45908 * 6 5 4 8 8 C 1.53006 * 109.87717 * 121.45748 * 6 5 4 9 9 N 1.46496 * 109.47284 * 180.30398 * 8 6 5 10 10 C 1.34774 * 119.99969 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99915 * 179.97438 * 10 9 8 13 13 C 1.50703 * 109.46867 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93100 * 269.72915 * 13 12 10 15 15 C 1.38104 * 120.06229 * 179.73035 * 14 13 12 16 16 C 1.38874 * 119.93419 * 0.52468 * 15 14 13 17 17 O 1.35745 * 120.06866 * 179.73143 * 16 15 14 18 18 C 1.34837 * 117.00157 * 174.48533 * 17 16 15 19 19 H 1.08008 * 119.99550 * 5.05325 * 18 17 16 20 20 C 1.38645 * 120.00417 * 185.05150 * 18 17 16 21 21 N 1.31556 * 120.00388 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99776 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47035 * 89.99821 * 22 20 18 24 24 H 1.48503 * 109.47080 * 209.99719 * 22 20 18 25 25 H 1.48503 * 109.47146 * 329.99436 * 22 20 18 26 26 C 1.38882 * 119.86194 * 359.74690 * 16 15 14 27 27 C 1.38097 * 119.92974 * 0.02562 * 26 16 15 28 28 O 1.43740 * 107.42270 * 1.96261 * 6 5 4 29 29 H 1.08999 * 109.46752 * 182.88042 * 1 2 3 30 30 H 1.08998 * 109.47032 * 302.87941 * 1 2 3 31 31 H 1.09000 * 109.46939 * 62.88339 * 1 2 3 32 32 H 1.08995 * 110.91079 * 86.11686 * 4 2 1 33 33 H 1.09010 * 110.90747 * 322.51536 * 4 2 1 34 34 H 1.09006 * 110.48129 * 262.20202 * 5 4 2 35 35 H 1.09002 * 110.60183 * 139.61762 * 5 4 2 36 36 H 1.09001 * 109.47000 * 60.30490 * 8 6 5 37 37 H 1.09001 * 109.47174 * 300.30962 * 8 6 5 38 38 H 0.96997 * 119.99978 * 0.27605 * 9 8 6 39 39 H 1.08996 * 109.47189 * 300.00238 * 12 10 9 40 40 H 1.09001 * 109.46986 * 60.00247 * 12 10 9 41 41 H 1.07994 * 119.96551 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.02758 * 180.27386 * 15 14 13 43 43 H 0.96998 * 120.00213 * 179.97438 * 21 20 18 44 44 H 1.07993 * 120.03491 * 179.97438 * 26 16 15 45 45 H 1.07997 * 119.96555 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4811 -1.2122 -0.7268 6 6 3.3875 -1.1218 0.8086 7 1 4.0897 -0.3752 1.1795 8 6 3.7008 -2.4844 1.4301 9 7 3.6022 -2.3903 2.8887 10 6 3.8377 -3.4761 3.6515 11 8 4.1317 -4.5311 3.1304 12 6 3.7368 -3.3791 5.1520 13 6 4.0442 -4.7216 5.7639 14 6 3.0233 -5.6268 5.9902 15 6 3.3027 -6.8600 6.5456 16 6 4.6086 -7.1864 6.8871 17 8 4.8854 -8.3957 7.4383 18 6 6.1849 -8.6933 7.6402 19 1 6.9456 -7.9524 7.4427 20 6 6.5447 -9.9504 8.1013 21 7 7.8127 -10.2410 8.2978 22 14 5.2291 -11.2320 8.4421 23 1 4.9819 -12.0268 7.2123 24 1 5.6861 -12.1333 9.5303 25 1 3.9735 -10.5549 8.8548 26 6 5.6307 -6.2730 6.6639 27 6 5.3456 -5.0434 6.1038 28 8 2.0428 -0.7332 1.1357 29 1 -0.3633 -1.0264 0.0516 30 1 -0.3633 0.5579 0.8630 31 1 -0.3633 0.4684 -0.9147 32 1 2.1483 -0.1453 -2.0959 33 1 1.4565 -1.6601 -1.4266 34 1 4.2403 -0.5268 -1.1038 35 1 3.7032 -2.2335 -1.0362 36 1 4.7108 -2.7865 1.1529 37 1 2.9876 -3.2232 1.0645 38 1 3.3632 -1.5475 3.3052 39 1 4.4508 -2.6409 5.5172 40 1 2.7271 -3.0764 5.4295 41 1 2.0074 -5.3706 5.7286 42 1 2.5056 -7.5681 6.7180 43 1 8.0643 -11.1203 8.6207 44 1 6.6471 -6.5238 6.9287 45 1 6.1400 -4.3328 5.9295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837287376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:29 Heat of formation + Delta-G solvation = -93.494247 kcal Electronic energy + Delta-G solvation = -25567.511046 eV Core-core repulsion = 21743.392538 eV Total energy + Delta-G solvation = -3824.118508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28354 -39.54116 -38.78840 -36.62940 -34.89998 -32.72790 -32.50059 -32.21173 -31.35887 -30.15932 -28.43439 -26.62188 -24.94613 -23.90450 -22.02368 -21.79125 -21.57924 -20.93456 -19.89063 -17.82154 -17.34732 -17.14737 -16.97038 -16.36307 -16.06482 -15.25344 -14.99485 -14.63444 -14.44302 -14.32631 -13.92903 -13.75251 -13.58415 -13.45698 -13.28570 -13.04927 -12.76632 -12.58516 -12.38429 -12.33526 -12.13982 -12.13467 -11.69789 -11.53468 -11.34642 -11.23527 -11.12547 -10.85210 -10.69747 -10.60640 -10.10456 -10.09710 -9.66462 -9.31543 -9.08259 -8.79850 -8.15521 -7.22817 -6.35568 -4.01756 2.23719 2.23837 2.83662 3.11384 3.26495 3.30638 3.41588 3.45385 4.05050 4.20332 4.29323 4.40742 4.48188 4.55152 4.71217 4.84921 4.91057 4.92913 5.03040 5.06182 5.12103 5.17908 5.29207 5.31162 5.33322 5.36065 5.47665 5.55426 5.61734 5.67522 5.70648 5.73830 5.74700 5.84161 6.20926 6.35143 6.41210 6.52311 6.64751 6.87598 7.10330 7.30486 7.38459 7.53457 7.69715 7.87409 8.10781 8.38826 9.00036 9.63324 10.72229 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030819 B = 0.002007 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.319914 B =13950.545458 C =14088.316956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.070 0.930 4 C -0.151 4.151 5 C -0.150 4.150 6 C 0.066 3.934 7 H 0.075 0.925 8 C 0.123 3.877 9 N -0.735 5.735 10 C 0.509 3.491 11 O -0.523 6.523 12 C -0.081 4.081 13 C -0.159 4.159 14 C -0.062 4.062 15 C -0.191 4.191 16 C 0.161 3.839 17 O -0.219 6.219 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.059 4.059 28 O -0.367 6.367 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.133 0.867 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.849 23.794 -16.675 31.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.088 0.912 4 C -0.188 4.188 5 C -0.188 4.188 6 C 0.008 3.992 7 H 0.093 0.907 8 C -0.001 4.001 9 N -0.389 5.389 10 C 0.295 3.705 11 O -0.398 6.398 12 C -0.121 4.121 13 C -0.161 4.161 14 C -0.080 4.080 15 C -0.210 4.210 16 C 0.109 3.891 17 O -0.124 6.124 18 C -0.463 4.463 19 H 0.124 0.876 20 C -0.141 4.141 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.238 4.238 27 C -0.077 4.077 28 O -0.287 6.287 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.235 0.765 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.150 0.850 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.711 22.588 -16.708 30.439 hybrid contribution -0.190 -0.089 0.047 0.215 sum -11.901 22.499 -16.661 30.421 Atomic orbital electron populations 1.21774 0.93033 1.03196 1.02429 1.23169 0.95324 0.95227 0.84923 0.91241 1.23185 0.96127 1.01022 0.98505 1.22920 0.98046 1.03583 0.94282 1.22974 0.85393 0.96044 0.94797 0.90715 1.21514 1.02040 0.95711 0.80813 1.45960 1.72954 1.13572 1.06395 1.21008 0.76282 0.83270 0.89895 1.90745 1.45767 1.28440 1.74839 1.20424 1.03623 0.97589 0.90501 1.18718 0.94015 0.95645 1.07684 1.20411 0.97618 0.92684 0.97332 1.20148 0.94507 0.98164 1.08192 1.19116 0.93199 0.85755 0.90990 1.83570 1.29156 1.29871 1.69814 1.20773 0.79670 1.00541 1.45339 0.87649 1.24463 0.96650 0.97016 0.95952 1.69648 1.15226 1.22829 1.44247 0.86178 0.81926 0.80454 0.78315 1.19912 1.20849 1.18376 1.21220 1.00289 0.94750 1.07569 1.20567 0.94919 0.95785 0.96443 1.88972 1.27264 1.73654 1.38775 0.91623 0.91786 0.91121 0.90113 0.90202 0.90193 0.89766 0.90430 0.91055 0.76467 0.88898 0.88871 0.87191 0.86570 0.91136 0.84980 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.66 37.16 0.36 -0.43 16 2 C 0.07 0.44 3.97 -25.68 -0.10 0.33 16 3 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 4 C -0.15 -0.78 6.59 -24.72 -0.16 -0.95 16 5 C -0.15 -0.84 6.64 -25.20 -0.17 -1.01 16 6 C 0.07 0.48 3.49 -26.16 -0.09 0.39 16 7 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 8 C 0.12 1.21 5.15 -4.04 -0.02 1.19 16 9 N -0.73 -7.79 5.47 -60.29 -0.33 -8.12 16 10 C 0.51 7.29 7.82 -10.98 -0.09 7.20 16 11 O -0.52 -10.12 16.03 5.56 0.09 -10.03 16 12 C -0.08 -1.04 5.83 -29.03 -0.17 -1.21 16 13 C -0.16 -2.80 4.38 -104.57 -0.46 -3.26 16 14 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 15 C -0.19 -4.04 9.99 -39.40 -0.39 -4.43 16 16 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 17 O -0.22 -6.02 8.59 0.04 0.00 -6.02 16 18 C -0.39 -11.30 9.95 30.88 0.31 -10.99 16 19 H 0.11 3.13 5.44 -52.48 -0.29 2.85 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -26.07 13.96 55.48 0.77 -25.29 16 22 Si 0.91 22.33 28.62 -169.99 -4.86 17.46 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.22 -5.01 9.17 -39.39 -0.36 -5.37 16 27 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 28 O -0.37 -3.15 10.75 -35.23 -0.38 -3.53 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.45 8.06 -51.92 -0.42 0.03 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.48 7.70 -51.93 -0.40 0.08 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 3.26 8.41 -40.82 -0.34 2.91 16 39 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.09 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 43 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.13 3.14 5.64 -52.49 -0.30 2.84 16 45 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -34.46 376.07 -8.30 -42.76 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.79 Total: 3.32 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.47 Total: -16.22 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.44 Total: -33.41 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.29 Total: -19.58 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.86 Total: 17.46 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.46 -8.30 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837287376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.731 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds