Wall clock time and date at job start Tue Mar 31 2020 13:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.55436 * 2 1 4 4 C 1.54998 * 110.61911 * 237.12063 * 2 1 3 5 5 C 1.54814 * 102.09218 * 204.32152 * 4 2 1 6 6 C 1.54094 * 104.18737 * 20.87568 * 5 4 2 7 7 H 1.08998 * 109.88011 * 242.45908 * 6 5 4 8 8 C 1.53006 * 109.87717 * 121.45748 * 6 5 4 9 9 N 1.46496 * 109.47284 * 180.30398 * 8 6 5 10 10 C 1.34774 * 119.99969 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99915 * 179.97438 * 10 9 8 13 13 C 1.50703 * 109.46867 * 179.97438 * 12 10 9 14 14 C 1.38300 * 119.93100 * 269.72915 * 13 12 10 15 15 C 1.38104 * 120.06229 * 179.73035 * 14 13 12 16 16 C 1.38874 * 119.93419 * 0.52468 * 15 14 13 17 17 O 1.35745 * 120.06866 * 179.73143 * 16 15 14 18 18 C 1.34837 * 117.00157 * 174.48533 * 17 16 15 19 19 H 1.08008 * 119.99550 * 5.05325 * 18 17 16 20 20 C 1.38645 * 120.00417 * 185.05150 * 18 17 16 21 21 N 1.31556 * 120.00388 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99776 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47035 * 89.99821 * 22 20 18 24 24 H 1.48503 * 109.47080 * 209.99719 * 22 20 18 25 25 H 1.48503 * 109.47146 * 329.99436 * 22 20 18 26 26 C 1.38882 * 119.86194 * 359.74690 * 16 15 14 27 27 C 1.38097 * 119.92974 * 0.02562 * 26 16 15 28 28 O 1.43740 * 107.42270 * 1.96261 * 6 5 4 29 29 H 1.08999 * 109.46752 * 182.88042 * 1 2 3 30 30 H 1.08998 * 109.47032 * 302.87941 * 1 2 3 31 31 H 1.09000 * 109.46939 * 62.88339 * 1 2 3 32 32 H 1.08995 * 110.91079 * 86.11686 * 4 2 1 33 33 H 1.09010 * 110.90747 * 322.51536 * 4 2 1 34 34 H 1.09006 * 110.48129 * 262.20202 * 5 4 2 35 35 H 1.09002 * 110.60183 * 139.61762 * 5 4 2 36 36 H 1.09001 * 109.47000 * 60.30490 * 8 6 5 37 37 H 1.09001 * 109.47174 * 300.30962 * 8 6 5 38 38 H 0.96997 * 119.99978 * 0.27605 * 9 8 6 39 39 H 1.08996 * 109.47189 * 300.00238 * 12 10 9 40 40 H 1.09001 * 109.46986 * 60.00247 * 12 10 9 41 41 H 1.07994 * 119.96551 * 359.97438 * 14 13 12 42 42 H 1.08001 * 120.02758 * 180.27386 * 15 14 13 43 43 H 0.96998 * 120.00213 * 179.97438 * 21 20 18 44 44 H 1.07993 * 120.03491 * 179.97438 * 26 16 15 45 45 H 1.07997 * 119.96555 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7875 -1.2183 5 6 3.4811 -1.2122 -0.7268 6 6 3.3875 -1.1218 0.8086 7 1 4.0897 -0.3752 1.1795 8 6 3.7008 -2.4844 1.4301 9 7 3.6022 -2.3903 2.8887 10 6 3.8377 -3.4761 3.6515 11 8 4.1317 -4.5311 3.1304 12 6 3.7368 -3.3791 5.1520 13 6 4.0442 -4.7216 5.7639 14 6 3.0233 -5.6268 5.9902 15 6 3.3027 -6.8600 6.5456 16 6 4.6086 -7.1864 6.8871 17 8 4.8854 -8.3957 7.4383 18 6 6.1849 -8.6933 7.6402 19 1 6.9456 -7.9524 7.4427 20 6 6.5447 -9.9504 8.1013 21 7 7.8127 -10.2410 8.2978 22 14 5.2291 -11.2320 8.4421 23 1 4.9819 -12.0268 7.2123 24 1 5.6861 -12.1333 9.5303 25 1 3.9735 -10.5549 8.8548 26 6 5.6307 -6.2730 6.6639 27 6 5.3456 -5.0434 6.1038 28 8 2.0428 -0.7332 1.1357 29 1 -0.3633 -1.0264 0.0516 30 1 -0.3633 0.5579 0.8630 31 1 -0.3633 0.4684 -0.9147 32 1 2.1483 -0.1453 -2.0959 33 1 1.4565 -1.6601 -1.4266 34 1 4.2403 -0.5268 -1.1038 35 1 3.7032 -2.2335 -1.0362 36 1 4.7108 -2.7865 1.1529 37 1 2.9876 -3.2232 1.0645 38 1 3.3632 -1.5475 3.3052 39 1 4.4508 -2.6409 5.5172 40 1 2.7271 -3.0764 5.4295 41 1 2.0074 -5.3706 5.7286 42 1 2.5056 -7.5681 6.7180 43 1 8.0643 -11.1203 8.6207 44 1 6.6471 -6.5238 6.9287 45 1 6.1400 -4.3328 5.9295 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837287376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:28 Heat of formation + Delta-G solvation = -116.988299 kcal Electronic energy + Delta-G solvation = -25568.529825 eV Core-core repulsion = 21743.392538 eV Total energy + Delta-G solvation = -3825.137286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20654 -40.75059 -40.13906 -38.31590 -35.85865 -34.52113 -33.25306 -33.21394 -32.45651 -31.80642 -29.35211 -28.00895 -26.68948 -24.64736 -23.70794 -22.46974 -22.28091 -22.08554 -21.06912 -19.81820 -19.11670 -18.04464 -17.79137 -17.12726 -16.93870 -16.68518 -16.26740 -15.88460 -15.73947 -15.57659 -15.50892 -15.10929 -14.79744 -14.48458 -14.39221 -14.26582 -14.07549 -13.93569 -13.68464 -13.20219 -13.04612 -12.89897 -12.76980 -12.60250 -12.52354 -12.41373 -12.34152 -12.15814 -11.92731 -11.75270 -11.57251 -11.28152 -10.96622 -10.80809 -10.63180 -10.06778 -9.78990 -8.98186 -8.50515 -6.23019 0.58375 0.61786 1.29712 1.34718 1.51091 1.73801 2.24165 2.27745 2.75711 2.83411 3.05975 3.18711 3.56952 3.72122 3.85311 3.95238 4.02026 4.03734 4.14416 4.19646 4.23480 4.34357 4.47103 4.49148 4.57564 4.58628 4.60697 4.70085 4.79117 4.81958 4.91344 4.94725 4.98644 5.07316 5.11857 5.21433 5.25571 5.30696 5.37375 5.47626 5.56679 5.73998 5.79702 5.91043 5.99327 6.24672 6.63524 6.83639 7.36283 7.58348 8.61246 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030819 B = 0.002007 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.319914 B =13950.545458 C =14088.316956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.065 3.935 3 H 0.083 0.917 4 C -0.148 4.148 5 C -0.150 4.150 6 C 0.072 3.928 7 H 0.091 0.909 8 C 0.121 3.879 9 N -0.716 5.716 10 C 0.509 3.491 11 O -0.583 6.583 12 C -0.079 4.079 13 C -0.137 4.137 14 C -0.061 4.061 15 C -0.193 4.193 16 C 0.117 3.883 17 O -0.246 6.246 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.008 3.992 21 N -0.923 5.923 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.263 1.263 26 C -0.238 4.238 27 C -0.065 4.065 28 O -0.389 6.389 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.417 0.583 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.151 0.849 42 H 0.128 0.872 43 H 0.285 0.715 44 H 0.107 0.893 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.220 26.912 -17.977 35.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.101 0.899 4 C -0.186 4.186 5 C -0.188 4.188 6 C 0.014 3.986 7 H 0.109 0.891 8 C -0.003 4.003 9 N -0.369 5.369 10 C 0.297 3.703 11 O -0.463 6.463 12 C -0.118 4.118 13 C -0.138 4.138 14 C -0.079 4.079 15 C -0.212 4.212 16 C 0.069 3.931 17 O -0.154 6.154 18 C -0.476 4.476 19 H 0.097 0.903 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.187 1.187 26 C -0.257 4.257 27 C -0.083 4.083 28 O -0.309 6.309 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.254 0.746 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.169 0.831 42 H 0.146 0.854 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.111 25.803 -18.027 34.495 hybrid contribution 0.438 -0.687 0.265 0.857 sum -13.674 25.116 -17.762 33.664 Atomic orbital electron populations 1.21790 0.92768 1.02500 1.03286 1.23365 0.95634 0.95715 0.84485 0.89909 1.23190 0.95545 1.00945 0.98926 1.22956 0.98895 1.03839 0.93157 1.22964 0.85395 0.94610 0.95651 0.89142 1.21573 1.01311 0.97086 0.80303 1.45812 1.71053 1.13313 1.06700 1.21188 0.75503 0.83067 0.90563 1.90747 1.48891 1.30724 1.75906 1.20549 1.06959 0.95237 0.89101 1.19309 0.92787 0.97467 1.04223 1.20940 0.99928 0.91372 0.95627 1.20497 0.93342 0.99734 1.07668 1.19670 0.95064 0.85420 0.92992 1.83508 1.27640 1.31766 1.72470 1.20713 0.80367 1.00585 1.45957 0.90326 1.25305 0.98922 0.98924 0.95865 1.69730 1.16896 1.23802 1.45990 0.85196 0.78801 0.77807 0.78741 1.19290 1.18855 1.18697 1.21255 0.99065 0.96490 1.08909 1.20917 0.96973 0.94791 0.95609 1.88938 1.27795 1.74127 1.40048 0.92937 0.92027 0.89329 0.88193 0.91111 0.88358 0.90356 0.90827 0.93038 0.74596 0.85431 0.85057 0.83111 0.85396 0.90561 0.87487 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.66 71.98 0.70 -0.59 16 2 C 0.06 0.63 3.97 31.28 0.12 0.76 16 3 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 4 C -0.15 -1.20 6.59 31.90 0.21 -0.99 16 5 C -0.15 -1.34 6.64 31.58 0.21 -1.13 16 6 C 0.07 0.86 3.49 30.97 0.11 0.97 16 7 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 8 C 0.12 2.18 5.15 86.38 0.44 2.62 16 9 N -0.72 -12.98 5.47 -463.06 -2.53 -15.51 16 10 C 0.51 13.03 7.82 87.66 0.69 13.72 16 11 O -0.58 -21.79 16.03 -3.02 -0.05 -21.84 16 12 C -0.08 -1.65 5.83 29.10 0.17 -1.48 16 13 C -0.14 -4.40 4.38 -19.83 -0.09 -4.49 16 14 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 15 C -0.19 -8.07 9.99 22.39 0.22 -7.85 16 16 C 0.12 5.93 6.65 22.58 0.15 6.08 16 17 O -0.25 -14.19 8.59 -22.76 -0.20 -14.39 16 18 C -0.40 -24.77 9.95 67.92 0.68 -24.10 16 19 H 0.08 5.11 5.44 -2.91 -0.02 5.09 16 20 C 0.01 0.48 5.49 84.83 0.47 0.95 16 21 N -0.92 -56.98 13.96 21.61 0.30 -56.68 16 22 Si 0.97 47.35 28.62 68.60 1.96 49.31 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.26 -12.75 7.11 99.48 0.71 -12.05 16 26 C -0.24 -11.34 9.17 22.39 0.21 -11.13 16 27 C -0.06 -2.45 9.69 22.25 0.22 -2.23 16 28 O -0.39 -5.72 10.75 -148.98 -1.60 -7.32 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.70 8.06 -2.38 -0.02 0.68 16 34 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 35 H 0.08 0.79 7.70 -2.39 -0.02 0.78 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.42 5.06 8.41 -92.71 -0.78 4.28 16 39 H 0.13 1.90 8.08 -2.39 -0.02 1.88 16 40 H 0.13 1.87 8.08 -2.39 -0.02 1.85 16 41 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 43 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 44 H 0.11 5.55 5.64 -2.91 -0.02 5.53 16 45 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -80.41 376.07 2.81 -77.59 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.22 Total: 19.56 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 4.71 Total: -30.73 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -2.23 Total: -72.19 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -1.85 Total: -43.54 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.96 Total: 49.31 kcal Total: -80.41 2.81 -77.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837287376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.394 kcal (2) G-P(sol) polarization free energy of solvation -80.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds