Wall clock time and date at job start Tue Mar 31 2020 13:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.89727 * 2 1 4 4 C 1.54383 * 109.83271 * 120.93702 * 2 1 3 5 5 C 1.55306 * 102.25505 * 140.87054 * 4 2 1 6 6 C 1.54956 * 100.94063 * 325.86895 * 5 4 2 7 7 H 1.09002 * 110.38956 * 277.48485 * 6 5 4 8 8 C 1.52995 * 110.30850 * 155.35917 * 6 5 4 9 9 N 1.46501 * 109.47217 * 182.83151 * 8 6 5 10 10 C 1.34774 * 119.99901 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00493 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99637 * 180.02562 * 10 9 8 13 13 C 1.50702 * 109.47088 * 179.97438 * 12 10 9 14 14 C 1.38311 * 119.92915 * 89.99653 * 13 12 10 15 15 C 1.38096 * 120.06782 * 180.02562 * 14 13 12 16 16 C 1.38883 * 119.93001 * 359.97438 * 15 14 13 17 17 O 1.35752 * 120.06733 * 179.72546 * 16 15 14 18 18 C 1.34835 * 116.99867 * 174.45565 * 17 16 15 19 19 H 1.08001 * 119.99908 * 5.03572 * 18 17 16 20 20 C 1.38654 * 119.99862 * 185.04415 * 18 17 16 21 21 N 1.31552 * 120.00015 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47583 * 89.99816 * 22 20 18 24 24 H 1.48496 * 109.47072 * 210.00091 * 22 20 18 25 25 H 1.48500 * 109.47137 * 329.99829 * 22 20 18 26 26 C 1.38878 * 119.86281 * 0.02562 * 16 15 14 27 27 C 1.38101 * 119.93252 * 0.02562 * 26 16 15 28 28 O 1.43242 * 109.83249 * 239.07073 * 2 1 3 29 29 H 1.09004 * 109.46977 * 179.47285 * 1 2 3 30 30 H 1.08993 * 109.47271 * 299.47379 * 1 2 3 31 31 H 1.09002 * 109.46758 * 59.47832 * 1 2 3 32 32 H 1.08991 * 110.84858 * 259.06235 * 4 2 1 33 33 H 1.09006 * 110.84367 * 22.48143 * 4 2 1 34 34 H 1.09002 * 111.12812 * 207.95204 * 5 4 2 35 35 H 1.09003 * 111.12313 * 83.78406 * 5 4 2 36 36 H 1.09003 * 109.47351 * 62.82981 * 8 6 5 37 37 H 1.09003 * 109.47264 * 302.83488 * 8 6 5 38 38 H 0.96997 * 119.99789 * 0.02562 * 9 8 6 39 39 H 1.08992 * 109.47282 * 60.00082 * 12 10 9 40 40 H 1.08999 * 109.46898 * 299.99462 * 12 10 9 41 41 H 1.08001 * 119.96584 * 359.97438 * 14 13 12 42 42 H 1.07998 * 120.03699 * 179.97438 * 15 14 13 43 43 H 0.96998 * 120.00173 * 179.97438 * 21 20 18 44 44 H 1.08007 * 120.03391 * 179.97438 * 26 16 15 45 45 H 1.07995 * 119.96459 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0538 -0.7466 1.2457 5 6 3.2731 -1.5222 0.6767 6 6 2.7747 -1.8444 -0.7548 7 1 2.1405 -2.7309 -0.7456 8 6 3.9626 -2.0520 -1.6964 9 7 3.4721 -2.2883 -3.0565 10 6 4.3459 -2.4979 -4.0610 11 8 5.5382 -2.4906 -3.8391 12 6 3.8413 -2.7404 -5.4602 13 6 5.0113 -2.9438 -6.3879 14 6 5.5137 -4.2155 -6.5964 15 6 6.5862 -4.4051 -7.4456 16 6 7.1599 -3.3173 -8.0908 17 8 8.2177 -3.4998 -8.9218 18 6 8.6534 -2.4215 -9.6040 19 1 8.2178 -1.4513 -9.4159 20 6 9.6605 -2.5582 -10.5472 21 7 10.0852 -1.5062 -11.2132 22 14 10.4143 -4.2362 -10.8721 23 1 9.6540 -4.9204 -11.9487 24 1 11.8285 -4.0704 -11.2935 25 1 10.3596 -5.0519 -9.6324 26 6 6.6531 -2.0417 -7.8794 27 6 5.5811 -1.8584 -7.0282 28 8 2.0160 -0.6926 -1.1559 29 1 -0.3633 -1.0277 -0.0095 30 1 -0.3633 0.5056 0.8946 31 1 -0.3633 0.5219 -0.8853 32 1 2.3672 -0.0427 2.0165 33 1 1.2999 -1.4325 1.6323 34 1 3.4573 -2.4350 1.2432 35 1 4.1621 -0.8920 0.6506 36 1 4.5430 -2.9130 -1.3648 37 1 4.5935 -1.1632 -1.6869 38 1 2.5186 -2.2931 -3.2342 39 1 3.2609 -1.8794 -5.7914 40 1 3.2106 -3.6293 -5.4700 41 1 5.0674 -5.0609 -6.0940 42 1 6.9783 -5.3982 -7.6077 43 1 10.7900 -1.6018 -11.8727 44 1 7.0974 -1.1937 -8.3795 45 1 5.1869 -0.8667 -6.8631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837287377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:31 Heat of formation + Delta-G solvation = -93.887158 kcal Electronic energy + Delta-G solvation = -25528.841091 eV Core-core repulsion = 21704.705545 eV Total energy + Delta-G solvation = -3824.135546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31051 -39.56563 -38.79609 -36.63107 -34.92240 -32.75363 -32.49738 -32.18767 -31.34680 -30.15748 -28.44565 -26.62871 -24.95504 -23.96362 -22.11679 -22.02062 -21.20984 -20.85282 -19.92180 -17.82068 -17.57006 -17.25572 -17.00515 -16.18818 -16.04444 -15.35226 -14.82176 -14.62473 -14.53240 -14.02673 -13.93082 -13.86915 -13.63798 -13.46047 -13.40768 -13.14994 -12.70042 -12.57503 -12.44384 -12.29636 -12.20188 -12.13117 -11.66265 -11.53580 -11.34517 -11.27118 -11.23512 -10.85143 -10.68940 -10.61056 -10.10001 -9.96397 -9.66940 -9.31547 -9.08757 -8.80015 -8.15357 -7.22772 -6.35651 -4.01769 2.23635 2.24118 2.82982 3.08128 3.26478 3.29665 3.41045 3.45625 3.96666 4.25805 4.28110 4.29223 4.54903 4.62591 4.68055 4.82926 4.87229 4.93069 5.05701 5.07710 5.12190 5.15741 5.23601 5.28094 5.32384 5.35689 5.45290 5.49686 5.63763 5.68894 5.72498 5.75547 5.76139 5.83946 6.21175 6.36716 6.41311 6.63138 6.64797 6.87745 7.10345 7.30572 7.38917 7.53070 7.69769 7.87596 8.10773 8.38222 8.99915 9.63346 10.72153 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.033814 B = 0.001962 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.851683 B =14266.273727 C =14368.220591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.075 3.925 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.149 4.149 6 C 0.069 3.931 7 H 0.077 0.923 8 C 0.123 3.877 9 N -0.735 5.735 10 C 0.509 3.491 11 O -0.524 6.524 12 C -0.082 4.082 13 C -0.160 4.160 14 C -0.062 4.062 15 C -0.191 4.191 16 C 0.161 3.839 17 O -0.219 6.219 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.058 4.058 28 O -0.371 6.371 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.402 0.598 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.279 0.721 44 H 0.133 0.867 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.517 -0.245 23.984 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.098 0.902 4 C -0.189 4.189 5 C -0.187 4.187 6 C 0.011 3.989 7 H 0.095 0.905 8 C -0.001 4.001 9 N -0.388 5.388 10 C 0.296 3.704 11 O -0.398 6.398 12 C -0.121 4.121 13 C -0.161 4.161 14 C -0.081 4.081 15 C -0.211 4.211 16 C 0.110 3.890 17 O -0.124 6.124 18 C -0.463 4.463 19 H 0.124 0.876 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.238 4.238 27 C -0.077 4.077 28 O -0.291 6.291 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.089 0.911 44 H 0.150 0.850 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.360 -0.286 23.704 30.607 hybrid contribution -0.062 -0.431 -0.008 0.436 sum -19.422 -0.717 23.696 30.647 Atomic orbital electron populations 1.22141 0.94824 1.02570 1.02434 1.22735 0.94344 0.96450 0.84749 0.90207 1.23194 0.97733 0.99816 0.98135 1.23248 0.98897 1.01600 0.94991 1.23229 0.92344 0.89789 0.93490 0.90533 1.21454 0.94965 1.02095 0.81584 1.45948 1.10238 1.74807 1.07850 1.21011 0.86577 0.75969 0.86876 1.90742 1.15976 1.49011 1.84109 1.20421 0.97758 1.03571 0.90393 1.18721 1.00509 0.93908 1.02945 1.20400 0.95373 0.95724 0.96561 1.20145 1.00072 0.97307 1.03542 1.19126 0.86683 0.93108 0.90132 1.83571 1.40404 1.37695 1.50735 1.20776 1.20064 0.87386 1.18104 0.87642 1.24464 0.96028 0.98901 0.94690 1.69647 1.28641 1.29270 1.24379 0.86176 0.78001 0.83121 0.79575 1.19934 1.20842 1.18367 1.21225 1.00518 0.97638 1.04437 1.20576 0.94986 0.97047 0.95049 1.88482 1.70400 1.40069 1.30122 0.92217 0.91559 0.91790 0.89880 0.90301 0.89485 0.89730 0.90403 0.91016 0.76433 0.88823 0.88923 0.87213 0.86577 0.91133 0.84978 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.44 37.16 0.35 -0.49 16 2 C 0.07 0.47 4.16 -26.01 -0.11 0.36 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.15 -0.70 6.55 -24.78 -0.16 -0.86 16 5 C -0.15 -0.80 6.57 -24.48 -0.16 -0.96 16 6 C 0.07 0.49 3.51 -25.70 -0.09 0.40 16 7 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 8 C 0.12 1.18 5.40 -4.04 -0.02 1.16 16 9 N -0.73 -7.68 5.48 -60.29 -0.33 -8.01 16 10 C 0.51 7.22 7.82 -10.98 -0.09 7.14 16 11 O -0.52 -10.03 16.03 5.56 0.09 -9.94 16 12 C -0.08 -1.04 5.83 -29.03 -0.17 -1.21 16 13 C -0.16 -2.80 4.38 -104.57 -0.46 -3.26 16 14 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 15 C -0.19 -4.03 9.99 -39.39 -0.39 -4.42 16 16 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 17 O -0.22 -6.02 8.59 0.03 0.00 -6.02 16 18 C -0.39 -11.29 9.95 30.89 0.31 -10.98 16 19 H 0.11 3.14 5.44 -52.49 -0.29 2.85 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -26.04 13.96 55.48 0.77 -25.26 16 22 Si 0.91 22.28 28.62 -169.99 -4.86 17.41 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.22 -5.02 9.17 -39.39 -0.36 -5.38 16 27 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 28 O -0.37 -3.19 10.55 -35.23 -0.37 -3.56 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 0.31 7.85 -51.93 -0.41 -0.10 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.48 8.06 -51.93 -0.42 0.07 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.40 3.23 8.41 -40.82 -0.34 2.88 16 39 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 40 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 43 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.13 3.16 5.64 -52.48 -0.30 2.86 16 45 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -34.40 376.16 -8.31 -42.71 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.80 Total: 3.19 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.48 Total: -16.18 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.44 Total: -33.28 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.28 Total: -19.52 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.86 Total: 17.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.40 -8.31 -42.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837287377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.182 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds