Wall clock time and date at job start Tue Mar 31 2020 13:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.89727 * 2 1 4 4 C 1.54383 * 109.83271 * 120.93702 * 2 1 3 5 5 C 1.55306 * 102.25505 * 140.87054 * 4 2 1 6 6 C 1.54956 * 100.94063 * 325.86895 * 5 4 2 7 7 H 1.09002 * 110.38956 * 277.48485 * 6 5 4 8 8 C 1.52995 * 110.30850 * 155.35917 * 6 5 4 9 9 N 1.46501 * 109.47217 * 182.83151 * 8 6 5 10 10 C 1.34774 * 119.99901 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00493 * 359.97438 * 10 9 8 12 12 C 1.50706 * 119.99637 * 180.02562 * 10 9 8 13 13 C 1.50702 * 109.47088 * 179.97438 * 12 10 9 14 14 C 1.38311 * 119.92915 * 89.99653 * 13 12 10 15 15 C 1.38096 * 120.06782 * 180.02562 * 14 13 12 16 16 C 1.38883 * 119.93001 * 359.97438 * 15 14 13 17 17 O 1.35752 * 120.06733 * 179.72546 * 16 15 14 18 18 C 1.34835 * 116.99867 * 174.45565 * 17 16 15 19 19 H 1.08001 * 119.99908 * 5.03572 * 18 17 16 20 20 C 1.38654 * 119.99862 * 185.04415 * 18 17 16 21 21 N 1.31552 * 120.00015 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47583 * 89.99816 * 22 20 18 24 24 H 1.48496 * 109.47072 * 210.00091 * 22 20 18 25 25 H 1.48500 * 109.47137 * 329.99829 * 22 20 18 26 26 C 1.38878 * 119.86281 * 0.02562 * 16 15 14 27 27 C 1.38101 * 119.93252 * 0.02562 * 26 16 15 28 28 O 1.43242 * 109.83249 * 239.07073 * 2 1 3 29 29 H 1.09004 * 109.46977 * 179.47285 * 1 2 3 30 30 H 1.08993 * 109.47271 * 299.47379 * 1 2 3 31 31 H 1.09002 * 109.46758 * 59.47832 * 1 2 3 32 32 H 1.08991 * 110.84858 * 259.06235 * 4 2 1 33 33 H 1.09006 * 110.84367 * 22.48143 * 4 2 1 34 34 H 1.09002 * 111.12812 * 207.95204 * 5 4 2 35 35 H 1.09003 * 111.12313 * 83.78406 * 5 4 2 36 36 H 1.09003 * 109.47351 * 62.82981 * 8 6 5 37 37 H 1.09003 * 109.47264 * 302.83488 * 8 6 5 38 38 H 0.96997 * 119.99789 * 0.02562 * 9 8 6 39 39 H 1.08992 * 109.47282 * 60.00082 * 12 10 9 40 40 H 1.08999 * 109.46898 * 299.99462 * 12 10 9 41 41 H 1.08001 * 119.96584 * 359.97438 * 14 13 12 42 42 H 1.07998 * 120.03699 * 179.97438 * 15 14 13 43 43 H 0.96998 * 120.00173 * 179.97438 * 21 20 18 44 44 H 1.08007 * 120.03391 * 179.97438 * 26 16 15 45 45 H 1.07995 * 119.96459 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0538 -0.7466 1.2457 5 6 3.2731 -1.5222 0.6767 6 6 2.7747 -1.8444 -0.7548 7 1 2.1405 -2.7309 -0.7456 8 6 3.9626 -2.0520 -1.6964 9 7 3.4721 -2.2883 -3.0565 10 6 4.3459 -2.4979 -4.0610 11 8 5.5382 -2.4906 -3.8391 12 6 3.8413 -2.7404 -5.4602 13 6 5.0113 -2.9438 -6.3879 14 6 5.5137 -4.2155 -6.5964 15 6 6.5862 -4.4051 -7.4456 16 6 7.1599 -3.3173 -8.0908 17 8 8.2177 -3.4998 -8.9218 18 6 8.6534 -2.4215 -9.6040 19 1 8.2178 -1.4513 -9.4159 20 6 9.6605 -2.5582 -10.5472 21 7 10.0852 -1.5062 -11.2132 22 14 10.4143 -4.2362 -10.8721 23 1 9.6540 -4.9204 -11.9487 24 1 11.8285 -4.0704 -11.2935 25 1 10.3596 -5.0519 -9.6324 26 6 6.6531 -2.0417 -7.8794 27 6 5.5811 -1.8584 -7.0282 28 8 2.0160 -0.6926 -1.1559 29 1 -0.3633 -1.0277 -0.0095 30 1 -0.3633 0.5056 0.8946 31 1 -0.3633 0.5219 -0.8853 32 1 2.3672 -0.0427 2.0165 33 1 1.2999 -1.4325 1.6323 34 1 3.4573 -2.4350 1.2432 35 1 4.1621 -0.8920 0.6506 36 1 4.5430 -2.9130 -1.3648 37 1 4.5935 -1.1632 -1.6869 38 1 2.5186 -2.2931 -3.2342 39 1 3.2609 -1.8794 -5.7914 40 1 3.2106 -3.6293 -5.4700 41 1 5.0674 -5.0609 -6.0940 42 1 6.9783 -5.3982 -7.6077 43 1 10.7900 -1.6018 -11.8727 44 1 7.0974 -1.1937 -8.3795 45 1 5.1869 -0.8667 -6.8631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837287377.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:31 Heat of formation + Delta-G solvation = -117.311551 kcal Electronic energy + Delta-G solvation = -25529.856849 eV Core-core repulsion = 21704.705545 eV Total energy + Delta-G solvation = -3825.151304 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20230 -40.76447 -40.16910 -38.31487 -35.87191 -34.52080 -33.25177 -33.21906 -32.42005 -31.80382 -29.34426 -28.00855 -26.69036 -24.69659 -23.70486 -22.65310 -22.41672 -21.58731 -21.12233 -19.81539 -19.11585 -18.18792 -17.91692 -17.18999 -16.79355 -16.69061 -16.28555 -15.91483 -15.71953 -15.57776 -15.26468 -15.14166 -14.73882 -14.49161 -14.34626 -14.28112 -14.07803 -13.94443 -13.87317 -13.15560 -13.04583 -12.85147 -12.74575 -12.65524 -12.52061 -12.41588 -12.34029 -12.13299 -11.93259 -11.73771 -11.68736 -11.28235 -10.96196 -10.80133 -10.49744 -10.05822 -9.78698 -8.97972 -8.50375 -6.22980 0.58707 0.62073 1.30115 1.34865 1.51699 1.74153 2.23688 2.28124 2.74037 2.82628 3.08403 3.16551 3.52351 3.76239 3.85731 3.88425 4.03634 4.12394 4.13956 4.17450 4.23944 4.38161 4.45929 4.47173 4.54575 4.58106 4.68396 4.70987 4.78874 4.82365 4.91099 4.92126 4.98774 5.05042 5.11097 5.25680 5.26528 5.36561 5.37919 5.48273 5.56772 5.74297 5.79913 5.91286 6.11465 6.25022 6.63981 6.83682 7.36665 7.58341 8.61432 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.033814 B = 0.001962 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.851683 B =14266.273727 C =14368.220591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.065 3.935 3 H 0.074 0.926 4 C -0.144 4.144 5 C -0.149 4.149 6 C 0.074 3.926 7 H 0.094 0.906 8 C 0.121 3.879 9 N -0.715 5.715 10 C 0.509 3.491 11 O -0.583 6.583 12 C -0.080 4.080 13 C -0.137 4.137 14 C -0.059 4.059 15 C -0.193 4.193 16 C 0.117 3.883 17 O -0.246 6.246 18 C -0.400 4.400 19 H 0.078 0.922 20 C 0.008 3.992 21 N -0.924 5.924 22 Si 0.974 3.026 23 H -0.263 1.263 24 H -0.266 1.266 25 H -0.265 1.265 26 C -0.239 4.239 27 C -0.067 4.067 28 O -0.394 6.394 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.417 0.583 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.155 0.845 42 H 0.130 0.870 43 H 0.285 0.715 44 H 0.106 0.894 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.601 -2.230 26.542 35.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.008 3.992 3 H 0.092 0.908 4 C -0.182 4.182 5 C -0.187 4.187 6 C 0.017 3.983 7 H 0.112 0.888 8 C -0.003 4.003 9 N -0.369 5.369 10 C 0.297 3.703 11 O -0.462 6.462 12 C -0.119 4.119 13 C -0.138 4.138 14 C -0.076 4.076 15 C -0.212 4.212 16 C 0.069 3.931 17 O -0.154 6.154 18 C -0.477 4.477 19 H 0.096 0.904 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.796 3.204 23 H -0.187 1.187 24 H -0.191 1.191 25 H -0.190 1.190 26 C -0.258 4.258 27 C -0.085 4.085 28 O -0.314 6.314 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.254 0.746 39 H 0.140 0.860 40 H 0.154 0.846 41 H 0.173 0.827 42 H 0.148 0.852 43 H 0.094 0.906 44 H 0.124 0.876 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.536 -2.259 26.305 34.713 hybrid contribution 0.586 0.264 -0.531 0.834 sum -21.950 -1.995 25.774 33.913 Atomic orbital electron populations 1.22112 0.93948 1.02787 1.02707 1.22896 0.95067 0.96251 0.84955 0.90832 1.23184 0.97495 0.99945 0.97527 1.23274 0.98902 1.02357 0.94206 1.23235 0.91509 0.90101 0.93485 0.88836 1.21523 0.96048 1.01128 0.81602 1.45802 1.10672 1.72784 1.07602 1.21168 0.85983 0.75282 0.87849 1.90744 1.18374 1.52082 1.85016 1.20546 0.96150 1.06996 0.88186 1.19313 1.00426 0.92908 1.01139 1.20954 0.93955 0.97563 0.95174 1.20516 1.00538 0.96956 1.03179 1.19687 0.87380 0.94840 0.91235 1.83509 1.42634 1.36710 1.52513 1.20710 1.20657 0.87256 1.19047 0.90420 1.25316 0.96419 1.02882 0.94402 1.69732 1.29866 1.31262 1.25587 0.85179 0.77899 0.78159 0.79208 1.18748 1.19063 1.18983 1.21243 1.02137 0.96645 1.05779 1.20905 0.94000 0.99222 0.94354 1.88446 1.70653 1.40691 1.31601 0.91939 0.90102 0.92771 0.88845 0.89027 0.87839 0.90594 0.90338 0.93229 0.74611 0.85969 0.84596 0.82728 0.85244 0.90554 0.87641 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.44 71.98 0.68 -0.62 16 2 C 0.07 0.70 4.16 31.06 0.13 0.83 16 3 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.14 -0.94 6.55 31.86 0.21 -0.74 16 5 C -0.15 -1.26 6.57 32.06 0.21 -1.05 16 6 C 0.07 0.87 3.51 31.26 0.11 0.98 16 7 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 8 C 0.12 2.11 5.40 86.38 0.47 2.57 16 9 N -0.72 -12.76 5.48 -463.06 -2.54 -15.30 16 10 C 0.51 12.89 7.82 87.66 0.69 13.58 16 11 O -0.58 -21.49 16.03 -3.03 -0.05 -21.54 16 12 C -0.08 -1.65 5.83 29.10 0.17 -1.48 16 13 C -0.14 -4.40 4.38 -19.83 -0.09 -4.48 16 14 C -0.06 -1.94 9.69 22.25 0.22 -1.73 16 15 C -0.19 -7.96 9.99 22.39 0.22 -7.74 16 16 C 0.12 5.93 6.65 22.58 0.15 6.08 16 17 O -0.25 -14.18 8.59 -22.81 -0.20 -14.38 16 18 C -0.40 -24.83 9.95 67.92 0.68 -24.15 16 19 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 20 C 0.01 0.48 5.49 84.83 0.47 0.94 16 21 N -0.92 -57.02 13.96 21.61 0.30 -56.72 16 22 Si 0.97 47.23 28.62 68.60 1.96 49.19 16 23 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 26 C -0.24 -11.48 9.17 22.39 0.21 -11.27 16 27 C -0.07 -2.56 9.69 22.25 0.22 -2.34 16 28 O -0.39 -5.96 10.55 -148.98 -1.57 -7.53 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 0.39 7.85 -2.38 -0.02 0.38 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.78 8.06 -2.39 -0.02 0.76 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 5.00 8.41 -92.71 -0.78 4.22 16 39 H 0.12 1.96 8.08 -2.39 -0.02 1.95 16 40 H 0.14 1.78 8.08 -2.39 -0.02 1.76 16 41 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 42 H 0.13 4.90 8.06 -2.91 -0.02 4.87 16 43 H 0.28 16.07 8.31 -92.71 -0.77 15.30 16 44 H 0.11 5.54 5.64 -2.91 -0.02 5.52 16 45 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -80.54 376.16 2.85 -77.68 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.22 Total: 19.22 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 4.72 Total: -30.62 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -2.23 Total: -72.01 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -1.82 Total: -43.46 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.96 Total: 49.19 kcal Total: -80.54 2.85 -77.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837287377.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.628 kcal (2) G-P(sol) polarization free energy of solvation -80.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds