Wall clock time and date at job start Tue Mar 31 2020 12:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47480 * 2 1 4 4 N 1.46500 * 109.47239 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00112 * 180.02562 * 4 3 2 6 6 O 1.21287 * 120.00031 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00288 * 179.97438 * 5 4 3 8 8 C 1.53002 * 109.47596 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47414 * 180.02562 * 8 7 5 10 10 O 1.45201 * 109.47260 * 179.97438 * 9 8 7 11 11 C 1.34805 * 117.00112 * 179.97438 * 10 9 8 12 12 O 1.21528 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.47286 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.39287 * 120.29060 * 356.63819 * 13 11 10 15 15 C 1.38203 * 120.08857 * 180.27521 * 14 13 11 16 16 C 1.38835 * 120.67877 * 359.73771 * 15 14 13 17 17 C 1.37593 * 120.58819 * 359.97438 * 16 15 14 18 18 C 1.40709 * 119.88255 * 0.02562 * 17 16 15 19 19 C 1.40864 * 120.33081 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00154 * 215.85139 * 19 18 17 21 21 C 1.40298 * 120.00223 * 35.84475 * 19 18 17 22 22 N 1.30618 * 119.99899 * 190.87325 * 21 19 18 23 23 Si 1.86800 * 119.99896 * 10.86757 * 21 19 18 24 24 H 1.48496 * 109.47409 * 267.47577 * 23 21 19 25 25 H 1.48501 * 109.47064 * 27.47797 * 23 21 19 26 26 H 1.48507 * 109.47023 * 147.47416 * 23 21 19 27 27 H 1.09005 * 109.46888 * 59.99786 * 1 2 3 28 28 H 1.09003 * 109.47615 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47140 * 300.00194 * 1 2 3 30 30 H 1.09003 * 109.47140 * 239.99806 * 2 1 3 31 31 H 1.09005 * 109.46888 * 120.00213 * 2 1 3 32 32 H 1.09003 * 109.47093 * 59.99777 * 3 2 1 33 33 H 1.09005 * 109.47235 * 300.00001 * 3 2 1 34 34 H 0.96996 * 120.00167 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46928 * 59.99952 * 7 5 4 36 36 H 1.08997 * 109.47765 * 300.00213 * 7 5 4 37 37 H 1.08995 * 109.47236 * 59.99739 * 8 7 5 38 38 H 1.09005 * 109.46623 * 300.00542 * 8 7 5 39 39 H 1.09003 * 109.47296 * 59.99822 * 9 8 7 40 40 H 1.08997 * 109.47168 * 300.00318 * 9 8 7 41 41 H 1.08002 * 119.95920 * 0.02562 * 14 13 11 42 42 H 1.08001 * 119.66200 * 179.76055 * 15 14 13 43 43 H 1.08005 * 119.70778 * 180.02562 * 16 15 14 44 44 H 1.07994 * 120.06115 * 180.02562 * 17 16 15 45 45 H 0.97002 * 119.99756 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1790 2.6095 -0.0002 6 8 3.5726 3.6599 0.0002 7 6 5.6859 2.6095 -0.0003 8 6 6.1961 4.0519 0.0009 9 6 7.7260 4.0519 0.0002 10 8 8.2101 5.4208 0.0007 11 6 9.5465 5.5974 0.0007 12 8 10.2868 4.6336 -0.0001 13 6 10.1096 6.9584 0.0018 14 6 9.2686 8.0666 -0.0678 15 6 9.8017 9.3416 -0.0722 16 6 11.1747 9.5357 -0.0024 17 6 12.0307 8.4611 0.0732 18 6 11.5141 7.1523 0.0794 19 6 12.3818 6.0454 0.1559 20 1 12.1486 5.1382 -0.3817 21 6 13.5492 6.1213 0.9304 22 7 14.4568 5.1866 0.8372 23 14 13.8056 7.5593 2.0948 24 1 14.5597 8.6321 1.3981 25 1 12.4867 8.0844 2.5309 26 1 14.5741 7.1045 3.2814 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9900 0.6023 -0.0006 35 1 6.0492 2.0959 -0.8905 36 1 6.0494 2.0953 0.8894 37 1 5.8328 4.5651 0.8913 38 1 5.8326 4.5665 -0.8887 39 1 8.0890 3.5388 -0.8904 40 1 8.0897 3.5371 0.8895 41 1 8.1988 7.9292 -0.1223 42 1 9.1435 10.1959 -0.1303 43 1 11.5743 10.5391 -0.0065 44 1 13.0972 8.6219 0.1276 45 1 15.2640 5.2393 1.3724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840197574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:17 Heat of formation + Delta-G solvation = -126.526889 kcal Electronic energy + Delta-G solvation = -25334.523642 eV Core-core repulsion = 21508.972731 eV Total energy + Delta-G solvation = -3825.550911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.99148 -39.39871 -37.53788 -36.24777 -35.54510 -33.82398 -33.54052 -32.88124 -30.55159 -30.24153 -28.05204 -26.04252 -25.35550 -22.88304 -22.13728 -21.75193 -21.21638 -20.42740 -19.60670 -17.59424 -17.26446 -16.81715 -16.47628 -16.29337 -15.92548 -15.80091 -15.22164 -15.07839 -14.23573 -14.08310 -13.84914 -13.72252 -13.55146 -13.30385 -12.91765 -12.71628 -12.63333 -12.35004 -12.31882 -12.17045 -11.98112 -11.61162 -11.55971 -11.36619 -11.11564 -11.00814 -10.95100 -10.72983 -10.48742 -10.30178 -10.05882 -9.89291 -9.81717 -9.38963 -9.31342 -8.84763 -7.86716 -7.67216 -7.00589 -4.59632 1.97861 2.44248 2.59714 2.82335 3.04645 3.12837 3.25188 3.56249 3.76330 3.90306 4.34602 4.48415 4.50281 4.52097 4.74658 4.88744 4.95184 5.14463 5.15883 5.24244 5.30700 5.38243 5.42607 5.46743 5.53765 5.63629 5.65868 5.73218 5.91374 5.97649 6.06182 6.11361 6.11792 6.25718 6.43662 6.54533 6.73451 7.05548 7.13107 7.18577 7.33882 7.39556 7.62291 7.72023 7.98106 7.98863 8.36432 8.53504 8.74657 9.04450 9.96006 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024077 B = 0.002114 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.678389 B =13242.779142 C =14102.114665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.737 5.737 5 C 0.514 3.486 6 O -0.535 6.535 7 C -0.138 4.138 8 C -0.103 4.103 9 C 0.070 3.930 10 O -0.368 6.368 11 C 0.502 3.498 12 O -0.507 6.507 13 C -0.240 4.240 14 C -0.019 4.019 15 C -0.257 4.257 16 C -0.059 4.059 17 C -0.227 4.227 18 C 0.118 3.882 19 C -0.402 4.402 20 H 0.124 0.876 21 C 0.079 3.921 22 N -0.787 5.787 23 Si 0.908 3.092 24 H -0.266 1.266 25 H -0.241 1.241 26 H -0.287 1.287 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.401 0.599 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.462 -8.799 -0.165 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.390 5.390 5 C 0.301 3.699 6 O -0.411 6.411 7 C -0.178 4.178 8 C -0.141 4.141 9 C -0.005 4.005 10 O -0.287 6.287 11 C 0.352 3.648 12 O -0.397 6.397 13 C -0.243 4.243 14 C -0.038 4.038 15 C -0.276 4.276 16 C -0.078 4.078 17 C -0.246 4.246 18 C 0.114 3.886 19 C -0.428 4.428 20 H 0.141 0.859 21 C -0.143 4.143 22 N -0.410 5.410 23 Si 0.734 3.266 24 H -0.192 1.192 25 H -0.164 1.164 26 H -0.214 1.214 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.125 0.875 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.464 -8.523 -0.117 20.336 hybrid contribution 0.555 -0.105 0.511 0.762 sum -17.908 -8.628 0.395 19.882 Atomic orbital electron populations 1.21684 0.94521 1.02190 1.02411 1.21741 0.97058 0.95844 1.02765 1.21401 0.79707 0.97098 1.02503 1.46059 1.07364 1.08883 1.76692 1.20726 0.90327 0.83435 0.75438 1.90732 1.70544 1.31255 1.48618 1.21551 0.91496 0.99777 1.04973 1.21234 0.93119 0.94743 1.05032 1.22731 0.93351 0.82353 1.02054 1.86556 1.26158 1.29944 1.86079 1.21272 0.78874 0.90819 0.73853 1.90774 1.58972 1.42759 1.47224 1.18664 0.93200 0.88153 1.24249 1.20989 0.97968 0.92180 0.92622 1.20379 0.94574 0.95787 1.16872 1.20804 0.93736 0.97151 0.96089 1.21101 0.98219 0.92777 1.12481 1.17509 0.90256 0.92567 0.88315 1.20240 0.99630 1.01209 1.21744 0.85891 1.26416 0.93659 0.96982 0.97202 1.69560 1.06355 1.32041 1.33055 0.86359 0.80584 0.80535 0.79103 1.19216 1.16406 1.21447 0.92304 0.92152 0.92310 0.91269 0.91270 0.91502 0.91506 0.76494 0.88402 0.88399 0.90166 0.90184 0.91871 0.91815 0.87290 0.88196 0.88332 0.87517 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.14 -0.62 6.05 -26.73 -0.16 -0.79 16 3 C 0.12 0.84 5.67 -4.05 -0.02 0.82 16 4 N -0.74 -5.55 5.56 -60.30 -0.33 -5.88 16 5 C 0.51 5.55 7.83 -10.99 -0.09 5.47 16 6 O -0.54 -8.13 15.98 5.55 0.09 -8.04 16 7 C -0.14 -1.28 5.70 -27.88 -0.16 -1.43 16 8 C -0.10 -1.33 4.88 -26.73 -0.13 -1.46 16 9 C 0.07 1.10 5.48 37.15 0.20 1.31 16 10 O -0.37 -7.44 9.47 -40.78 -0.39 -7.82 16 11 C 0.50 12.00 7.85 34.41 0.27 12.27 16 12 O -0.51 -13.34 13.32 -19.29 -0.26 -13.60 16 13 C -0.24 -5.87 5.92 -104.39 -0.62 -6.49 16 14 C -0.02 -0.41 9.60 -39.20 -0.38 -0.79 16 15 C -0.26 -5.22 10.03 -39.37 -0.39 -5.62 16 16 C -0.06 -1.24 10.01 -39.60 -0.40 -1.64 16 17 C -0.23 -5.35 7.02 -38.88 -0.27 -5.63 16 18 C 0.12 3.05 5.04 -106.53 -0.54 2.51 16 19 C -0.40 -11.17 8.32 -37.81 -0.31 -11.48 16 20 H 0.12 3.75 5.95 -52.49 -0.31 3.43 16 21 C 0.08 2.07 5.47 -17.29 -0.09 1.98 16 22 N -0.79 -20.92 13.92 55.57 0.77 -20.15 16 23 Si 0.91 20.42 24.51 -169.99 -4.17 16.26 16 24 H -0.27 -5.67 6.74 56.52 0.38 -5.29 16 25 H -0.24 -5.58 6.75 56.52 0.38 -5.20 16 26 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.40 1.84 8.47 -40.82 -0.35 1.49 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 38 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.11 2.11 7.61 -52.49 -0.40 1.71 16 42 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 44 H 0.11 2.45 4.96 -52.49 -0.26 2.19 16 45 H 0.29 6.86 8.29 -40.82 -0.34 6.52 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -32.46 375.30 -8.18 -40.64 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.83 Total: 4.19 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -2.72 Total: -11.25 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.44 Total: -26.03 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.55 Total: -29.46 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.26 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.46 -8.18 -40.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840197574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.885 kcal (2) G-P(sol) polarization free energy of solvation -32.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds