Wall clock time and date at job start Tue Mar 31 2020 12:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47480 * 2 1 4 4 N 1.46500 * 109.47239 * 180.02562 * 3 2 1 5 5 C 1.34773 * 120.00112 * 180.02562 * 4 3 2 6 6 O 1.21287 * 120.00031 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00288 * 179.97438 * 5 4 3 8 8 C 1.53002 * 109.47596 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47414 * 180.02562 * 8 7 5 10 10 O 1.45201 * 109.47260 * 179.97438 * 9 8 7 11 11 C 1.34805 * 117.00112 * 179.97438 * 10 9 8 12 12 O 1.21528 * 120.00035 * 0.02562 * 11 10 9 13 13 C 1.47286 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.39287 * 120.29060 * 356.63819 * 13 11 10 15 15 C 1.38203 * 120.08857 * 180.27521 * 14 13 11 16 16 C 1.38835 * 120.67877 * 359.73771 * 15 14 13 17 17 C 1.37593 * 120.58819 * 359.97438 * 16 15 14 18 18 C 1.40709 * 119.88255 * 0.02562 * 17 16 15 19 19 C 1.40864 * 120.33081 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00154 * 215.85139 * 19 18 17 21 21 C 1.40298 * 120.00223 * 35.84475 * 19 18 17 22 22 N 1.30618 * 119.99899 * 190.87325 * 21 19 18 23 23 Si 1.86800 * 119.99896 * 10.86757 * 21 19 18 24 24 H 1.48496 * 109.47409 * 267.47577 * 23 21 19 25 25 H 1.48501 * 109.47064 * 27.47797 * 23 21 19 26 26 H 1.48507 * 109.47023 * 147.47416 * 23 21 19 27 27 H 1.09005 * 109.46888 * 59.99786 * 1 2 3 28 28 H 1.09003 * 109.47615 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47140 * 300.00194 * 1 2 3 30 30 H 1.09003 * 109.47140 * 239.99806 * 2 1 3 31 31 H 1.09005 * 109.46888 * 120.00213 * 2 1 3 32 32 H 1.09003 * 109.47093 * 59.99777 * 3 2 1 33 33 H 1.09005 * 109.47235 * 300.00001 * 3 2 1 34 34 H 0.96996 * 120.00167 * 359.97438 * 4 3 2 35 35 H 1.09003 * 109.46928 * 59.99952 * 7 5 4 36 36 H 1.08997 * 109.47765 * 300.00213 * 7 5 4 37 37 H 1.08995 * 109.47236 * 59.99739 * 8 7 5 38 38 H 1.09005 * 109.46623 * 300.00542 * 8 7 5 39 39 H 1.09003 * 109.47296 * 59.99822 * 9 8 7 40 40 H 1.08997 * 109.47168 * 300.00318 * 9 8 7 41 41 H 1.08002 * 119.95920 * 0.02562 * 14 13 11 42 42 H 1.08001 * 119.66200 * 179.76055 * 15 14 13 43 43 H 1.08005 * 119.70778 * 180.02562 * 16 15 14 44 44 H 1.07994 * 120.06115 * 180.02562 * 17 16 15 45 45 H 0.97002 * 119.99756 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1790 2.6095 -0.0002 6 8 3.5726 3.6599 0.0002 7 6 5.6859 2.6095 -0.0003 8 6 6.1961 4.0519 0.0009 9 6 7.7260 4.0519 0.0002 10 8 8.2101 5.4208 0.0007 11 6 9.5465 5.5974 0.0007 12 8 10.2868 4.6336 -0.0001 13 6 10.1096 6.9584 0.0018 14 6 9.2686 8.0666 -0.0678 15 6 9.8017 9.3416 -0.0722 16 6 11.1747 9.5357 -0.0024 17 6 12.0307 8.4611 0.0732 18 6 11.5141 7.1523 0.0794 19 6 12.3818 6.0454 0.1559 20 1 12.1486 5.1382 -0.3817 21 6 13.5492 6.1213 0.9304 22 7 14.4568 5.1866 0.8372 23 14 13.8056 7.5593 2.0948 24 1 14.5597 8.6321 1.3981 25 1 12.4867 8.0844 2.5309 26 1 14.5741 7.1045 3.2814 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9900 0.6023 -0.0006 35 1 6.0492 2.0959 -0.8905 36 1 6.0494 2.0953 0.8894 37 1 5.8328 4.5651 0.8913 38 1 5.8326 4.5665 -0.8887 39 1 8.0890 3.5388 -0.8904 40 1 8.0897 3.5371 0.8895 41 1 8.1988 7.9292 -0.1223 42 1 9.1435 10.1959 -0.1303 43 1 11.5743 10.5391 -0.0065 44 1 13.0972 8.6219 0.1276 45 1 15.2640 5.2393 1.3724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840197574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:16 Heat of formation + Delta-G solvation = -147.081309 kcal Electronic energy + Delta-G solvation = -25335.414949 eV Core-core repulsion = 21508.972731 eV Total energy + Delta-G solvation = -3826.442217 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.25347 -40.78208 -39.27932 -37.36217 -36.81739 -35.60859 -34.76869 -33.50470 -32.39558 -31.97398 -29.04636 -27.42000 -26.57721 -24.49819 -23.31793 -22.77130 -22.51974 -21.53081 -21.07955 -19.49113 -18.61860 -18.12739 -17.60170 -17.47328 -17.04408 -16.93631 -16.86188 -16.01006 -15.84241 -15.52203 -15.44499 -14.99807 -14.83622 -14.48069 -13.99305 -13.96034 -13.80615 -13.67279 -13.43814 -13.34569 -13.17030 -12.86613 -12.73492 -12.57113 -12.38558 -12.25686 -12.15479 -12.06991 -12.03978 -11.76443 -11.64665 -11.38575 -11.12105 -10.98004 -10.72538 -10.12722 -9.63659 -9.50644 -8.90711 -6.58279 0.16984 0.80868 1.24738 1.37257 1.47254 1.60113 1.80851 1.94714 2.09705 2.31180 2.62648 3.44234 3.65731 3.88756 3.90413 3.92520 4.06301 4.24362 4.25669 4.30495 4.35153 4.39077 4.39740 4.50198 4.65377 4.65814 4.71346 4.75861 4.83060 4.87515 4.94472 5.02240 5.14218 5.14331 5.23324 5.25499 5.33025 5.39593 5.48176 5.59074 5.66722 5.83875 5.90612 6.21485 6.38943 6.52541 6.65971 6.72148 7.20952 7.23423 8.13035 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024077 B = 0.002114 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.678389 B =13242.779142 C =14102.114665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.114 3.886 4 N -0.720 5.720 5 C 0.512 3.488 6 O -0.587 6.587 7 C -0.130 4.130 8 C -0.092 4.092 9 C 0.064 3.936 10 O -0.367 6.367 11 C 0.501 3.499 12 O -0.541 6.541 13 C -0.264 4.264 14 C -0.024 4.024 15 C -0.236 4.236 16 C -0.051 4.051 17 C -0.245 4.245 18 C 0.105 3.895 19 C -0.447 4.447 20 H 0.077 0.923 21 C 0.040 3.960 22 N -0.835 5.835 23 Si 0.966 3.034 24 H -0.242 1.242 25 H -0.251 1.251 26 H -0.276 1.276 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.418 0.582 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.132 0.868 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.111 0.889 45 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.040 -7.192 0.293 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.009 4.009 4 N -0.373 5.373 5 C 0.300 3.700 6 O -0.467 6.467 7 C -0.170 4.170 8 C -0.130 4.130 9 C -0.009 4.009 10 O -0.285 6.285 11 C 0.352 3.648 12 O -0.434 6.434 13 C -0.267 4.267 14 C -0.042 4.042 15 C -0.254 4.254 16 C -0.069 4.069 17 C -0.264 4.264 18 C 0.101 3.899 19 C -0.475 4.475 20 H 0.095 0.905 21 C -0.176 4.176 22 N -0.460 5.460 23 Si 0.788 3.212 24 H -0.167 1.167 25 H -0.175 1.175 26 H -0.203 1.203 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.255 0.745 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.150 0.850 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.128 0.872 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.061 -6.962 0.326 21.237 hybrid contribution 0.741 -0.557 0.278 0.968 sum -19.321 -7.519 0.604 20.741 Atomic orbital electron populations 1.21704 0.94323 1.02790 1.02147 1.21689 0.97130 0.93890 1.03739 1.21456 0.79354 0.98805 1.01318 1.45953 1.07673 1.08812 1.74883 1.20950 0.90843 0.83463 0.74778 1.90715 1.71513 1.33135 1.51324 1.21523 0.90473 0.97580 1.07417 1.21129 0.90527 0.97283 1.04031 1.23081 0.95143 0.80274 1.02447 1.86519 1.23977 1.32657 1.85354 1.21399 0.79787 0.90599 0.73031 1.90771 1.60123 1.43821 1.48673 1.19070 0.93517 0.89544 1.24557 1.21301 0.98890 0.91950 0.92089 1.20968 0.95100 0.96458 1.12890 1.21323 0.93752 0.98393 0.93406 1.21249 0.99129 0.92501 1.13524 1.17759 0.90751 0.93287 0.88101 1.20024 1.02068 1.00704 1.24731 0.90548 1.27138 0.92936 0.99474 0.98084 1.69595 1.07382 1.34053 1.34970 0.85504 0.80169 0.78050 0.77518 1.16684 1.17467 1.20276 0.92610 0.91080 0.92633 0.90237 0.90260 0.92772 0.92750 0.74468 0.85891 0.85967 0.91250 0.91161 0.91421 0.91556 0.85025 0.83808 0.83883 0.87163 0.89174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.13 -0.93 6.05 30.59 0.19 -0.75 16 3 C 0.11 1.55 5.67 86.38 0.49 2.04 16 4 N -0.72 -9.70 5.56 -463.07 -2.57 -12.27 16 5 C 0.51 10.54 7.83 87.66 0.69 11.22 16 6 O -0.59 -17.90 15.98 -3.05 -0.05 -17.95 16 7 C -0.13 -2.18 5.70 29.85 0.17 -2.01 16 8 C -0.09 -2.31 4.88 30.59 0.15 -2.16 16 9 C 0.06 2.03 5.48 71.98 0.39 2.43 16 10 O -0.37 -14.90 9.47 -57.17 -0.54 -15.44 16 11 C 0.50 24.68 7.85 70.20 0.55 25.23 16 12 O -0.54 -30.15 13.32 19.74 0.26 -29.89 16 13 C -0.26 -12.99 5.92 -19.71 -0.12 -13.11 16 14 C -0.02 -0.98 9.60 22.51 0.22 -0.76 16 15 C -0.24 -8.42 10.03 22.40 0.22 -8.20 16 16 C -0.05 -1.89 10.01 22.26 0.22 -1.67 16 17 C -0.25 -11.15 7.02 22.72 0.16 -10.99 16 18 C 0.10 5.51 5.04 -21.10 -0.11 5.40 16 19 C -0.45 -26.32 8.32 23.41 0.19 -26.12 16 20 H 0.08 5.08 5.95 -2.91 -0.02 5.07 16 21 C 0.04 2.18 5.47 85.37 0.47 2.65 16 22 N -0.83 -46.71 13.92 21.89 0.30 -46.41 16 23 Si 0.97 42.17 24.51 68.60 1.68 43.86 16 24 H -0.24 -9.54 6.74 99.48 0.67 -8.87 16 25 H -0.25 -11.20 6.75 99.48 0.67 -10.53 16 26 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 27 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.42 2.76 8.47 -92.71 -0.79 1.97 16 35 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.90 8.10 -2.39 -0.02 1.89 16 38 H 0.07 1.91 8.10 -2.38 -0.02 1.89 16 39 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.13 4.69 7.61 -2.91 -0.02 4.67 16 42 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.11 4.87 4.96 -2.91 -0.01 4.86 16 45 H 0.30 14.75 8.29 -92.71 -0.77 13.98 16 Total: -1.00 -75.93 375.30 3.83 -72.10 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.14 Total: 23.18 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.60 Total: -17.18 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -2.27 Total: -58.68 kcal Atomic # 8 Polarization: -62.95 SS G_CDS: -0.33 Total: -63.28 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.68 Total: 43.86 kcal Total: -75.93 3.83 -72.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840197574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.984 kcal (2) G-P(sol) polarization free energy of solvation -75.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds