Wall clock time and date at job start Tue Mar 31 2020 12:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47043 * 2 1 4 4 N 1.46501 * 109.47314 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00330 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99659 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.99893 * 179.97438 * 5 4 3 8 8 C 1.53006 * 109.47022 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47208 * 180.02562 * 8 7 5 10 10 O 1.45200 * 109.47190 * 179.97438 * 9 8 7 11 11 C 1.34701 * 117.00169 * 179.97438 * 10 9 8 12 12 O 1.21471 * 120.00074 * 0.02562 * 11 10 9 13 13 C 1.47769 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.39960 * 120.03302 * 359.97438 * 13 11 10 15 15 C 1.38317 * 120.35753 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.41703 * 359.97438 * 15 14 13 17 17 C 1.40757 * 120.05004 * 0.02562 * 16 15 14 18 18 C 1.41439 * 120.17704 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99698 * 24.41558 * 18 17 16 20 20 C 1.39932 * 120.00172 * 204.41934 * 18 17 16 21 21 N 1.30824 * 120.00201 * 17.84828 * 20 18 17 22 22 Si 1.86806 * 119.99927 * 197.84744 * 20 18 17 23 23 H 1.48496 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46953 * 120.00169 * 22 20 18 25 25 H 1.48506 * 109.46942 * 240.00042 * 22 20 18 26 26 C 1.39059 * 120.03051 * 180.02562 * 13 11 10 27 27 H 1.09008 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46764 * 299.99096 * 1 2 3 29 29 H 1.08988 * 109.47290 * 59.99609 * 1 2 3 30 30 H 1.09002 * 109.46698 * 240.00452 * 2 1 3 31 31 H 1.08997 * 109.47718 * 120.00822 * 2 1 3 32 32 H 1.09002 * 109.47005 * 60.00640 * 3 2 1 33 33 H 1.08992 * 109.47829 * 300.00545 * 3 2 1 34 34 H 0.97005 * 119.99884 * 0.02562 * 4 3 2 35 35 H 1.08998 * 109.47465 * 60.00499 * 7 5 4 36 36 H 1.09004 * 109.47459 * 300.00118 * 7 5 4 37 37 H 1.08998 * 109.46696 * 59.99902 * 8 7 5 38 38 H 1.09000 * 109.46565 * 300.00055 * 8 7 5 39 39 H 1.09004 * 109.47581 * 59.99695 * 9 8 7 40 40 H 1.09004 * 109.47091 * 299.99881 * 9 8 7 41 41 H 1.08008 * 119.82112 * 359.97438 * 14 13 11 42 42 H 1.08005 * 119.79035 * 180.02562 * 15 14 13 43 43 H 1.08001 * 119.97827 * 179.97438 * 16 15 14 44 44 H 0.96997 * 120.00007 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.20114 * 359.70048 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0011 7 6 5.6858 2.6097 -0.0003 8 6 6.1959 4.0523 0.0009 9 6 7.7258 4.0523 0.0002 10 8 8.2098 5.4212 0.0007 11 6 9.5452 5.5977 0.0007 12 8 10.2852 4.6344 -0.0001 13 6 10.1100 6.9632 0.0006 14 6 9.2581 8.0737 0.0000 15 6 9.7795 9.3548 -0.0006 16 6 11.1427 9.5530 -0.0001 17 6 12.0155 8.4487 0.0006 18 6 13.4156 8.6490 0.0006 19 1 13.8295 9.5689 0.3868 20 6 14.2646 7.6556 -0.4998 21 7 13.7863 6.7146 -1.2727 22 14 16.0811 7.6729 -0.0643 23 1 16.3675 8.8324 0.8182 24 1 16.4327 6.4150 0.6423 25 1 16.8869 7.7848 -1.3066 26 6 11.4885 7.1462 0.0001 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8898 30 1 1.8933 -0.5138 -0.8901 31 1 1.8935 -0.5139 0.8898 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9564 -0.8898 34 1 3.9900 0.6025 -0.0013 35 1 6.0492 2.0963 -0.8905 36 1 6.0493 2.0955 0.8895 37 1 5.8325 4.5653 0.8913 38 1 5.8325 4.5667 -0.8887 39 1 8.0888 3.5392 -0.8904 40 1 8.0896 3.5376 0.8896 41 1 8.1877 7.9294 -0.0009 42 1 9.1136 10.2052 -0.0007 43 1 11.5422 10.5564 -0.0010 44 1 14.3748 6.0263 -1.6198 45 1 12.1499 6.2924 0.0047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840214692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:19 Heat of formation + Delta-G solvation = -133.526375 kcal Electronic energy + Delta-G solvation = -24890.215732 eV Core-core repulsion = 21064.361301 eV Total energy + Delta-G solvation = -3825.854431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.07525 -39.67043 -37.40868 -36.32620 -35.86561 -33.87307 -33.66635 -32.93901 -30.35828 -29.49951 -28.16174 -26.06000 -25.32113 -23.26244 -22.17564 -21.73263 -20.97251 -20.51057 -19.72072 -17.82405 -17.34966 -16.58728 -16.45866 -16.24808 -16.06257 -15.86088 -15.23354 -14.95717 -14.64388 -14.19351 -13.98938 -13.47755 -13.34508 -13.24371 -12.99162 -12.73809 -12.65818 -12.39167 -12.37444 -12.27753 -11.69825 -11.64506 -11.40361 -11.27886 -11.25354 -11.14892 -11.07666 -10.74981 -10.50935 -10.19065 -10.14233 -10.11856 -9.71526 -9.46552 -9.43762 -9.24501 -7.73583 -7.55043 -6.82951 -4.43440 1.99230 2.38479 2.74048 2.77628 3.06676 3.11303 3.13516 3.31188 3.61200 3.90233 4.30427 4.44570 4.45125 4.58064 4.70647 4.78724 4.82729 5.11166 5.12439 5.15064 5.26457 5.31458 5.33085 5.45524 5.50662 5.54969 5.60312 5.69904 5.76831 5.98716 6.04689 6.12872 6.20841 6.42943 6.65462 6.94143 6.96533 7.00855 7.13166 7.17328 7.32007 7.69435 7.76589 7.91533 7.93349 8.10854 8.44761 8.57428 8.77286 8.79482 10.12448 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.001827 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.541442 B =15318.342164 C =16130.974716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.737 5.737 5 C 0.514 3.486 6 O -0.534 6.534 7 C -0.138 4.138 8 C -0.104 4.104 9 C 0.066 3.934 10 O -0.354 6.354 11 C 0.513 3.487 12 O -0.520 6.520 13 C -0.116 4.116 14 C -0.193 4.193 15 C -0.104 4.104 16 C -0.201 4.201 17 C 0.095 3.905 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.787 5.787 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.089 4.089 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.401 0.599 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.284 0.716 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.010 -14.041 1.757 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.390 5.390 5 C 0.300 3.700 6 O -0.410 6.410 7 C -0.178 4.178 8 C -0.142 4.142 9 C -0.008 4.008 10 O -0.272 6.272 11 C 0.360 3.640 12 O -0.410 6.410 13 C -0.117 4.117 14 C -0.212 4.212 15 C -0.122 4.122 16 C -0.221 4.221 17 C 0.092 3.908 18 C -0.489 4.489 19 H 0.101 0.899 20 C -0.146 4.146 21 N -0.412 5.412 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.109 4.109 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.189 -13.786 1.609 22.880 hybrid contribution 1.034 -0.761 0.025 1.284 sum -17.155 -14.547 1.634 22.551 Atomic orbital electron populations 1.21682 0.94498 1.02207 1.02433 1.21738 0.97083 0.95813 1.02746 1.21406 0.79640 0.97129 1.02546 1.46056 1.07399 1.08842 1.76664 1.20689 0.90261 0.83477 0.75537 1.90738 1.70498 1.31247 1.48537 1.21543 0.91680 0.99580 1.04967 1.21241 0.92679 0.94962 1.05333 1.22865 0.93883 0.81824 1.02260 1.86590 1.25276 1.30385 1.84925 1.21871 0.79356 0.91037 0.71751 1.90753 1.60223 1.42921 1.47059 1.18848 0.94489 0.87793 1.10612 1.20593 0.97574 0.91889 1.11176 1.20519 0.95026 0.95430 1.01249 1.21190 0.92753 0.97770 1.10386 1.17548 0.93506 0.90346 0.89382 1.19597 0.90624 1.02620 1.36043 0.89910 1.25964 1.01780 0.94235 0.92586 1.69789 1.38279 1.11317 1.21798 0.86227 0.81511 0.79506 0.79325 1.18291 1.19590 1.19909 1.21649 0.91250 0.98837 0.99116 0.92145 0.92292 0.92293 0.91278 0.91281 0.91471 0.91474 0.76505 0.88379 0.88400 0.89966 0.89951 0.91536 0.91579 0.87769 0.88494 0.88332 0.90497 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.14 -0.57 6.05 -26.73 -0.16 -0.73 16 3 C 0.12 0.79 5.67 -4.04 -0.02 0.76 16 4 N -0.74 -5.11 5.56 -60.30 -0.34 -5.45 16 5 C 0.51 5.22 7.83 -10.99 -0.09 5.14 16 6 O -0.53 -7.84 15.98 5.56 0.09 -7.75 16 7 C -0.14 -1.15 5.70 -27.88 -0.16 -1.31 16 8 C -0.10 -1.25 4.88 -26.73 -0.13 -1.38 16 9 C 0.07 0.96 5.47 37.15 0.20 1.17 16 10 O -0.35 -6.83 9.46 -40.49 -0.38 -7.21 16 11 C 0.51 11.70 7.90 34.63 0.27 11.97 16 12 O -0.52 -12.74 16.12 -19.24 -0.31 -13.05 16 13 C -0.12 -2.85 5.87 -105.05 -0.62 -3.46 16 14 C -0.19 -4.34 9.62 -38.91 -0.37 -4.72 16 15 C -0.10 -2.28 10.01 -39.73 -0.40 -2.68 16 16 C -0.20 -4.80 9.78 -38.81 -0.38 -5.18 16 17 C 0.09 2.50 5.57 -106.87 -0.60 1.90 16 18 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 19 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 20 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 21 N -0.79 -20.67 10.95 55.55 0.61 -20.06 16 22 Si 0.91 18.59 29.60 -169.99 -5.03 13.56 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 C -0.09 -2.38 8.23 -38.42 -0.32 -2.70 16 27 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.24 8.14 -51.94 -0.42 -0.18 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.58 8.47 -40.82 -0.35 1.23 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.10 2.13 7.59 -52.48 -0.40 1.73 16 42 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.28 6.81 8.30 -40.82 -0.34 6.47 16 45 H 0.14 3.84 5.74 -52.49 -0.30 3.54 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -32.11 385.56 -9.31 -41.42 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.93 Total: 4.76 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -2.83 Total: -12.04 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.27 Total: -25.51 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.60 Total: -28.00 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.11 -9.31 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840214692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.105 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds