Wall clock time and date at job start Tue Mar 31 2020 12:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47043 * 2 1 4 4 N 1.46501 * 109.47314 * 180.02562 * 3 2 1 5 5 C 1.34780 * 120.00330 * 180.02562 * 4 3 2 6 6 O 1.21276 * 119.99659 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.99893 * 179.97438 * 5 4 3 8 8 C 1.53006 * 109.47022 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47208 * 180.02562 * 8 7 5 10 10 O 1.45200 * 109.47190 * 179.97438 * 9 8 7 11 11 C 1.34701 * 117.00169 * 179.97438 * 10 9 8 12 12 O 1.21471 * 120.00074 * 0.02562 * 11 10 9 13 13 C 1.47769 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.39960 * 120.03302 * 359.97438 * 13 11 10 15 15 C 1.38317 * 120.35753 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.41703 * 359.97438 * 15 14 13 17 17 C 1.40757 * 120.05004 * 0.02562 * 16 15 14 18 18 C 1.41439 * 120.17704 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99698 * 24.41558 * 18 17 16 20 20 C 1.39932 * 120.00172 * 204.41934 * 18 17 16 21 21 N 1.30824 * 120.00201 * 17.84828 * 20 18 17 22 22 Si 1.86806 * 119.99927 * 197.84744 * 20 18 17 23 23 H 1.48496 * 109.47243 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46953 * 120.00169 * 22 20 18 25 25 H 1.48506 * 109.46942 * 240.00042 * 22 20 18 26 26 C 1.39059 * 120.03051 * 180.02562 * 13 11 10 27 27 H 1.09008 * 109.46896 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46764 * 299.99096 * 1 2 3 29 29 H 1.08988 * 109.47290 * 59.99609 * 1 2 3 30 30 H 1.09002 * 109.46698 * 240.00452 * 2 1 3 31 31 H 1.08997 * 109.47718 * 120.00822 * 2 1 3 32 32 H 1.09002 * 109.47005 * 60.00640 * 3 2 1 33 33 H 1.08992 * 109.47829 * 300.00545 * 3 2 1 34 34 H 0.97005 * 119.99884 * 0.02562 * 4 3 2 35 35 H 1.08998 * 109.47465 * 60.00499 * 7 5 4 36 36 H 1.09004 * 109.47459 * 300.00118 * 7 5 4 37 37 H 1.08998 * 109.46696 * 59.99902 * 8 7 5 38 38 H 1.09000 * 109.46565 * 300.00055 * 8 7 5 39 39 H 1.09004 * 109.47581 * 59.99695 * 9 8 7 40 40 H 1.09004 * 109.47091 * 299.99881 * 9 8 7 41 41 H 1.08008 * 119.82112 * 359.97438 * 14 13 11 42 42 H 1.08005 * 119.79035 * 180.02562 * 15 14 13 43 43 H 1.08001 * 119.97827 * 179.97438 * 16 15 14 44 44 H 0.96997 * 120.00007 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.20114 * 359.70048 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1789 2.6097 -0.0002 6 8 3.5725 3.6600 0.0011 7 6 5.6858 2.6097 -0.0003 8 6 6.1959 4.0523 0.0009 9 6 7.7258 4.0523 0.0002 10 8 8.2098 5.4212 0.0007 11 6 9.5452 5.5977 0.0007 12 8 10.2852 4.6344 -0.0001 13 6 10.1100 6.9632 0.0006 14 6 9.2581 8.0737 0.0000 15 6 9.7795 9.3548 -0.0006 16 6 11.1427 9.5530 -0.0001 17 6 12.0155 8.4487 0.0006 18 6 13.4156 8.6490 0.0006 19 1 13.8295 9.5689 0.3868 20 6 14.2646 7.6556 -0.4998 21 7 13.7863 6.7146 -1.2727 22 14 16.0811 7.6729 -0.0643 23 1 16.3675 8.8324 0.8182 24 1 16.4327 6.4150 0.6423 25 1 16.8869 7.7848 -1.3066 26 6 11.4885 7.1462 0.0001 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8898 30 1 1.8933 -0.5138 -0.8901 31 1 1.8935 -0.5139 0.8898 32 1 1.6767 1.9562 0.8901 33 1 1.6767 1.9564 -0.8898 34 1 3.9900 0.6025 -0.0013 35 1 6.0492 2.0963 -0.8905 36 1 6.0493 2.0955 0.8895 37 1 5.8325 4.5653 0.8913 38 1 5.8325 4.5667 -0.8887 39 1 8.0888 3.5392 -0.8904 40 1 8.0896 3.5376 0.8896 41 1 8.1877 7.9294 -0.0009 42 1 9.1136 10.2052 -0.0007 43 1 11.5422 10.5564 -0.0010 44 1 14.3748 6.0263 -1.6198 45 1 12.1499 6.2924 0.0047 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840214692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:18 Heat of formation + Delta-G solvation = -151.824535 kcal Electronic energy + Delta-G solvation = -24891.009200 eV Core-core repulsion = 21064.361301 eV Total energy + Delta-G solvation = -3826.647899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45808 -40.78897 -39.21474 -37.60845 -36.83177 -35.63605 -34.81792 -33.50709 -32.19739 -31.36837 -29.08660 -27.31372 -26.69171 -24.84310 -22.98523 -22.80863 -22.52872 -21.63190 -21.10310 -19.62533 -18.40964 -17.90646 -17.72111 -17.56668 -17.02503 -16.92088 -16.64870 -16.43749 -16.05631 -15.32093 -15.14676 -15.05095 -14.79884 -14.38110 -14.01277 -13.85473 -13.81140 -13.51214 -13.46989 -13.28239 -12.99561 -12.86520 -12.81303 -12.58197 -12.42451 -12.21509 -12.19683 -12.04598 -12.01530 -11.76301 -11.54579 -11.48815 -11.29526 -11.09729 -10.95585 -10.12259 -9.62389 -9.45300 -8.68935 -6.39922 0.12730 0.95867 1.38531 1.45470 1.54919 1.60965 1.62690 1.79995 2.19660 2.26681 2.71868 3.62494 3.63647 3.78462 3.86606 3.91878 4.06502 4.11649 4.25969 4.34522 4.36442 4.38313 4.44730 4.62640 4.64984 4.65434 4.76149 4.83740 4.87786 5.00833 5.04591 5.09456 5.13143 5.14346 5.23530 5.28057 5.32556 5.38067 5.45115 5.49025 5.81382 5.89330 6.00734 6.22275 6.52647 6.53496 6.81511 6.86611 6.88691 7.24394 8.28978 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030278 B = 0.001827 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.541442 B =15318.342164 C =16130.974716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.114 3.886 4 N -0.720 5.720 5 C 0.510 3.490 6 O -0.588 6.588 7 C -0.129 4.129 8 C -0.095 4.095 9 C 0.060 3.940 10 O -0.354 6.354 11 C 0.517 3.483 12 O -0.544 6.544 13 C -0.131 4.131 14 C -0.184 4.184 15 C -0.099 4.099 16 C -0.204 4.204 17 C 0.065 3.935 18 C -0.493 4.493 19 H 0.088 0.912 20 C 0.030 3.970 21 N -0.826 5.826 22 Si 0.985 3.015 23 H -0.251 1.251 24 H -0.269 1.269 25 H -0.264 1.264 26 C -0.121 4.121 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.419 0.581 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.140 0.860 43 H 0.116 0.884 44 H 0.288 0.712 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.752 -14.860 2.058 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.010 4.010 4 N -0.373 5.373 5 C 0.298 3.702 6 O -0.468 6.468 7 C -0.168 4.168 8 C -0.133 4.133 9 C -0.013 4.013 10 O -0.271 6.271 11 C 0.365 3.635 12 O -0.436 6.436 13 C -0.132 4.132 14 C -0.203 4.203 15 C -0.117 4.117 16 C -0.224 4.224 17 C 0.063 3.937 18 C -0.522 4.522 19 H 0.106 0.894 20 C -0.185 4.185 21 N -0.452 5.452 22 Si 0.805 3.195 23 H -0.174 1.174 24 H -0.194 1.194 25 H -0.189 1.189 26 C -0.141 4.141 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.256 0.744 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.134 0.866 44 H 0.099 0.901 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.964 -14.644 1.909 24.036 hybrid contribution 1.037 -0.524 -0.074 1.165 sum -17.927 -15.169 1.835 23.555 Atomic orbital electron populations 1.21705 0.94415 1.02773 1.02116 1.21682 0.97057 0.93886 1.03760 1.21447 0.79450 0.98788 1.01269 1.45948 1.07612 1.08839 1.74879 1.20999 0.90966 0.83432 0.74791 1.90722 1.71558 1.33206 1.51319 1.21520 0.90323 0.97394 1.07607 1.21156 0.90544 0.97465 1.04133 1.23266 0.95308 0.79527 1.03242 1.86551 1.22959 1.33470 1.84098 1.21617 0.80391 0.90194 0.71330 1.90728 1.61173 1.43476 1.48265 1.19121 0.94210 0.89626 1.10260 1.20949 0.98560 0.91587 1.09223 1.20955 0.94852 0.96592 0.99307 1.21500 0.93573 0.97872 1.09459 1.17916 0.94490 0.91076 0.90196 1.19889 0.91219 1.03635 1.37439 0.89435 1.26870 1.06428 0.93395 0.91785 1.69874 1.40103 1.12223 1.22960 0.85119 0.75519 0.79572 0.79293 1.17426 1.19426 1.18915 1.21463 0.92066 0.98317 1.02267 0.91092 0.92647 0.92678 0.90230 0.90193 0.92804 0.92856 0.74415 0.85753 0.85633 0.91136 0.91313 0.90731 0.90450 0.85304 0.84271 0.86626 0.90090 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 71.98 0.71 -0.30 16 2 C -0.13 -0.81 6.05 30.59 0.19 -0.62 16 3 C 0.11 1.44 5.67 86.38 0.49 1.93 16 4 N -0.72 -8.65 5.56 -463.08 -2.57 -11.23 16 5 C 0.51 9.70 7.83 87.65 0.69 10.39 16 6 O -0.59 -17.29 15.98 -3.02 -0.05 -17.34 16 7 C -0.13 -1.84 5.70 29.85 0.17 -1.67 16 8 C -0.09 -2.17 4.88 30.59 0.15 -2.02 16 9 C 0.06 1.67 5.47 71.98 0.39 2.06 16 10 O -0.35 -13.39 9.46 -56.11 -0.53 -13.92 16 11 C 0.52 23.78 7.90 70.34 0.56 24.33 16 12 O -0.54 -27.23 16.12 19.93 0.32 -26.91 16 13 C -0.13 -6.49 5.87 -20.14 -0.12 -6.61 16 14 C -0.18 -8.02 9.62 22.71 0.22 -7.80 16 15 C -0.10 -4.14 10.01 22.17 0.22 -3.91 16 16 C -0.20 -9.60 9.78 22.77 0.22 -9.38 16 17 C 0.07 3.54 5.57 -21.32 -0.12 3.42 16 18 C -0.49 -26.34 9.05 23.47 0.21 -26.13 16 19 H 0.09 4.40 7.91 -2.91 -0.02 4.38 16 20 C 0.03 1.55 5.14 85.25 0.44 1.98 16 21 N -0.83 -45.01 10.95 21.82 0.24 -44.77 16 22 Si 0.98 38.62 29.60 68.60 2.03 40.65 16 23 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 24 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 26 C -0.12 -6.72 8.23 23.02 0.19 -6.53 16 27 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.42 2.06 8.47 -92.70 -0.79 1.27 16 35 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 38 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 39 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.13 4.95 7.59 -2.91 -0.02 4.92 16 42 H 0.14 4.62 8.06 -2.91 -0.02 4.59 16 43 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 44 H 0.29 14.34 8.30 -92.71 -0.77 13.57 16 45 H 0.11 6.47 5.74 -2.91 -0.02 6.45 16 Total: -1.00 -72.91 385.56 4.25 -68.65 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.21 Total: 25.72 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.61 Total: -20.85 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -2.33 Total: -56.00 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -0.26 Total: -58.17 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -72.91 4.25 -68.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840214692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.171 kcal (2) G-P(sol) polarization free energy of solvation -72.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds