Wall clock time and date at job start Tue Mar 31 2020 12:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46996 * 2 1 4 4 N 1.46496 * 109.47250 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00277 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00046 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00435 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47248 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47360 * 180.02562 * 8 7 5 10 10 O 1.45197 * 109.47520 * 179.97438 * 9 8 7 11 11 C 1.34777 * 117.00031 * 179.97438 * 10 9 8 12 12 O 1.21504 * 119.99877 * 0.02562 * 11 10 9 13 13 C 1.47511 * 120.00005 * 179.97438 * 11 10 9 14 14 C 1.40062 * 119.90007 * 179.97438 * 13 11 10 15 15 C 1.36301 * 120.09854 * 180.25545 * 14 13 11 16 16 C 1.40898 * 119.89747 * 359.51805 * 15 14 13 17 17 C 1.41088 * 120.09801 * 180.23021 * 16 15 14 18 18 H 1.08004 * 120.00254 * 205.25010 * 17 16 15 19 19 C 1.40247 * 120.00057 * 25.25428 * 17 16 15 20 20 N 1.30633 * 119.99971 * 17.90299 * 19 17 16 21 21 Si 1.86808 * 119.99982 * 197.90967 * 19 17 16 22 22 H 1.48494 * 109.47142 * 94.52344 * 21 19 17 23 23 H 1.48508 * 109.46771 * 214.52492 * 21 19 17 24 24 H 1.48496 * 109.47083 * 334.52055 * 21 19 17 25 25 C 1.40895 * 119.80478 * 0.50708 * 16 15 14 26 26 C 1.36298 * 119.89575 * 359.72208 * 25 16 15 27 27 H 1.09001 * 109.46996 * 60.00336 * 1 2 3 28 28 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46957 * 299.99890 * 1 2 3 30 30 H 1.08997 * 109.47643 * 240.00313 * 2 1 3 31 31 H 1.09002 * 109.47708 * 119.99891 * 2 1 3 32 32 H 1.08994 * 109.47171 * 59.99819 * 3 2 1 33 33 H 1.09001 * 109.46974 * 299.99678 * 3 2 1 34 34 H 0.96997 * 120.00268 * 0.02562 * 4 3 2 35 35 H 1.08994 * 109.47115 * 60.00277 * 7 5 4 36 36 H 1.09001 * 109.46777 * 300.00291 * 7 5 4 37 37 H 1.09008 * 109.47537 * 59.99858 * 8 7 5 38 38 H 1.09005 * 109.47149 * 299.99993 * 8 7 5 39 39 H 1.08994 * 109.47104 * 59.99558 * 9 8 7 40 40 H 1.09005 * 109.46939 * 300.00067 * 9 8 7 41 41 H 1.07996 * 119.95285 * 359.97438 * 14 13 11 42 42 H 1.08003 * 120.04948 * 179.75205 * 15 14 13 43 43 H 0.97002 * 119.99961 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.05517 * 179.70820 * 25 16 15 45 45 H 1.08001 * 119.94895 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6858 2.6099 0.0003 8 6 6.1958 4.0524 0.0004 9 6 7.7258 4.0525 -0.0002 10 8 8.2097 5.4214 -0.0007 11 6 9.5459 5.5981 -0.0007 12 8 10.2860 4.6345 -0.0008 13 6 10.1096 6.9612 -0.0018 14 6 11.4985 7.1423 -0.0013 15 6 12.0238 8.4000 0.0030 16 6 11.1674 9.5188 -0.0033 17 6 11.7066 10.8226 -0.0039 18 1 11.1295 11.6459 0.3907 19 6 12.9920 11.0496 -0.5168 20 7 13.5496 10.1633 -1.2978 21 14 13.9069 12.6195 -0.0829 22 1 14.7909 12.3708 1.0841 23 1 14.7279 13.0505 -1.2429 24 1 12.9293 13.6850 0.2547 25 6 9.7709 9.3318 -0.0033 26 6 9.2544 8.0705 -0.0028 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9900 0.6026 0.0006 35 1 6.0492 2.0958 -0.8895 36 1 6.0491 2.0963 0.8904 37 1 5.8324 4.5662 0.8904 38 1 5.8324 4.5663 -0.8896 39 1 8.0888 3.5389 -0.8904 40 1 8.0895 3.5385 0.8896 41 1 12.1542 6.2842 0.0003 42 1 13.0949 8.5388 0.0075 43 1 14.4388 10.3201 -1.6522 44 1 9.1107 10.1866 -0.0034 45 1 8.1841 7.9261 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840378307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:22 Heat of formation + Delta-G solvation = -138.429875 kcal Electronic energy + Delta-G solvation = -24627.745765 eV Core-core repulsion = 20801.678702 eV Total energy + Delta-G solvation = -3826.067063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.04523 -39.50298 -37.46689 -36.30735 -35.76201 -33.95690 -33.72039 -32.92617 -30.27359 -29.58795 -28.18270 -26.38297 -25.60369 -22.65353 -22.11768 -21.68476 -21.00606 -20.48462 -19.76849 -17.58526 -17.33071 -16.88362 -16.55009 -16.33138 -16.01134 -15.88891 -15.38441 -15.17829 -14.27172 -14.01216 -13.93511 -13.46418 -13.35004 -13.18780 -12.95955 -12.73257 -12.59803 -12.35285 -12.26717 -12.20049 -11.90561 -11.63940 -11.46880 -11.39679 -11.29627 -11.19227 -11.11186 -10.94813 -10.67276 -10.12043 -10.09241 -10.05649 -9.56472 -9.43457 -9.42848 -9.38466 -7.73451 -7.62564 -7.08215 -4.66242 2.07634 2.39722 2.76950 2.87978 2.94206 2.97543 3.04623 3.45486 3.65641 3.72223 4.31157 4.45553 4.46292 4.48464 4.71470 4.80917 4.87335 5.11840 5.12990 5.17955 5.30107 5.33257 5.37405 5.50777 5.51482 5.53317 5.60794 5.70523 5.96389 6.02362 6.07112 6.19647 6.27156 6.29763 6.76132 6.82809 7.00522 7.07046 7.14150 7.15898 7.42966 7.63402 7.80291 7.88350 7.94618 8.02565 8.37393 8.57940 8.70475 8.77709 9.83571 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.041742 B = 0.001638 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.620354 B =17094.423000 C =17645.504147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.116 3.884 4 N -0.737 5.737 5 C 0.513 3.487 6 O -0.534 6.534 7 C -0.137 4.137 8 C -0.105 4.105 9 C 0.069 3.931 10 O -0.360 6.360 11 C 0.515 3.485 12 O -0.553 6.553 13 C -0.275 4.275 14 C -0.033 4.033 15 C -0.184 4.184 16 C 0.132 3.868 17 C -0.436 4.436 18 H 0.088 0.912 19 C 0.073 3.927 20 N -0.764 5.764 21 Si 0.916 3.084 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.239 4.239 26 C -0.027 4.027 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.401 0.599 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.289 0.711 44 H 0.100 0.900 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.822 -16.196 1.625 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.390 5.390 5 C 0.300 3.700 6 O -0.410 6.410 7 C -0.177 4.177 8 C -0.143 4.143 9 C -0.006 4.006 10 O -0.278 6.278 11 C 0.367 3.633 12 O -0.447 6.447 13 C -0.277 4.277 14 C -0.052 4.052 15 C -0.203 4.203 16 C 0.128 3.872 17 C -0.463 4.463 18 H 0.106 0.894 19 C -0.149 4.149 20 N -0.387 5.387 21 Si 0.739 3.261 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.259 4.259 26 C -0.046 4.046 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.235 0.765 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.883 -15.756 1.464 22.420 hybrid contribution 0.719 -0.061 0.021 0.721 sum -15.164 -15.817 1.485 21.962 Atomic orbital electron populations 1.21683 0.94501 1.02198 1.02439 1.21738 0.97080 0.95818 1.02728 1.21407 0.79655 0.97118 1.02550 1.46051 1.07388 1.08837 1.76695 1.20706 0.90287 0.83473 0.75539 1.90741 1.70504 1.31241 1.48499 1.21541 0.91634 0.99657 1.04884 1.21246 0.92902 0.94855 1.05262 1.22776 0.93654 0.82203 1.01948 1.86582 1.25761 1.29960 1.85486 1.21580 0.78986 0.90789 0.71942 1.90688 1.60203 1.43195 1.50575 1.18241 0.93672 0.87704 1.28128 1.20451 0.92395 0.97020 0.95288 1.20955 0.99966 0.90870 1.08517 1.17852 0.91108 0.93440 0.84788 1.19937 0.98912 0.94844 1.32602 0.89438 1.26158 0.97374 0.98947 0.92456 1.69745 1.14970 1.34499 1.19458 0.86161 0.79700 0.80962 0.79278 1.18892 1.19893 1.18140 1.20730 0.95041 0.95412 1.14698 1.20569 0.97535 0.92340 0.94165 0.92292 0.92152 0.92289 0.91289 0.91291 0.91478 0.91471 0.76525 0.88443 0.88455 0.90031 0.90024 0.91846 0.91851 0.88055 0.86039 0.89999 0.88180 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.60 9.91 37.16 0.37 -0.23 16 2 C -0.14 -0.57 6.05 -26.73 -0.16 -0.73 16 3 C 0.12 0.79 5.67 -4.04 -0.02 0.77 16 4 N -0.74 -5.14 5.56 -60.30 -0.33 -5.48 16 5 C 0.51 5.27 7.83 -10.99 -0.09 5.19 16 6 O -0.53 -7.92 15.98 5.56 0.09 -7.83 16 7 C -0.14 -1.16 5.70 -27.88 -0.16 -1.32 16 8 C -0.10 -1.28 4.88 -26.73 -0.13 -1.41 16 9 C 0.07 1.01 5.48 37.16 0.20 1.22 16 10 O -0.36 -7.00 9.45 -40.70 -0.38 -7.39 16 11 C 0.51 11.59 7.89 34.51 0.27 11.86 16 12 O -0.55 -13.16 16.11 -19.27 -0.31 -13.47 16 13 C -0.27 -6.59 5.89 -104.75 -0.62 -7.21 16 14 C -0.03 -0.81 9.52 -39.60 -0.38 -1.18 16 15 C -0.18 -4.69 8.63 -39.27 -0.34 -5.03 16 16 C 0.13 3.37 5.57 -106.80 -0.59 2.77 16 17 C -0.44 -10.78 9.04 -37.75 -0.34 -11.12 16 18 H 0.09 2.05 7.91 -52.48 -0.42 1.63 16 19 C 0.07 1.70 5.13 -17.31 -0.09 1.61 16 20 N -0.76 -18.46 11.00 55.56 0.61 -17.84 16 21 Si 0.92 17.17 29.60 -169.99 -5.03 12.14 16 22 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 23 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 25 C -0.24 -5.71 9.73 -39.28 -0.38 -6.09 16 26 C -0.03 -0.63 9.55 -39.59 -0.38 -1.01 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.40 1.58 8.47 -40.82 -0.35 1.23 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.08 8.10 -51.92 -0.42 0.66 16 38 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.10 2.41 7.63 -52.49 -0.40 2.01 16 42 H 0.12 3.13 6.20 -52.48 -0.33 2.81 16 43 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 44 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 45 H 0.10 2.14 7.59 -52.49 -0.40 1.74 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -31.10 385.39 -9.32 -40.42 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.93 Total: 5.57 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.83 Total: -11.92 kcal Atomic # 7 Polarization: -23.60 SS G_CDS: 0.28 Total: -23.32 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.61 Total: -28.69 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.10 -9.32 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840378307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.006 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds