Wall clock time and date at job start Tue Mar 31 2020 12:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46996 * 2 1 4 4 N 1.46496 * 109.47250 * 179.97438 * 3 2 1 5 5 C 1.34772 * 120.00277 * 179.97438 * 4 3 2 6 6 O 1.21283 * 120.00046 * 0.02562 * 5 4 3 7 7 C 1.50705 * 120.00435 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47248 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47360 * 180.02562 * 8 7 5 10 10 O 1.45197 * 109.47520 * 179.97438 * 9 8 7 11 11 C 1.34777 * 117.00031 * 179.97438 * 10 9 8 12 12 O 1.21504 * 119.99877 * 0.02562 * 11 10 9 13 13 C 1.47511 * 120.00005 * 179.97438 * 11 10 9 14 14 C 1.40062 * 119.90007 * 179.97438 * 13 11 10 15 15 C 1.36301 * 120.09854 * 180.25545 * 14 13 11 16 16 C 1.40898 * 119.89747 * 359.51805 * 15 14 13 17 17 C 1.41088 * 120.09801 * 180.23021 * 16 15 14 18 18 H 1.08004 * 120.00254 * 205.25010 * 17 16 15 19 19 C 1.40247 * 120.00057 * 25.25428 * 17 16 15 20 20 N 1.30633 * 119.99971 * 17.90299 * 19 17 16 21 21 Si 1.86808 * 119.99982 * 197.90967 * 19 17 16 22 22 H 1.48494 * 109.47142 * 94.52344 * 21 19 17 23 23 H 1.48508 * 109.46771 * 214.52492 * 21 19 17 24 24 H 1.48496 * 109.47083 * 334.52055 * 21 19 17 25 25 C 1.40895 * 119.80478 * 0.50708 * 16 15 14 26 26 C 1.36298 * 119.89575 * 359.72208 * 25 16 15 27 27 H 1.09001 * 109.46996 * 60.00336 * 1 2 3 28 28 H 1.09000 * 109.46778 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46957 * 299.99890 * 1 2 3 30 30 H 1.08997 * 109.47643 * 240.00313 * 2 1 3 31 31 H 1.09002 * 109.47708 * 119.99891 * 2 1 3 32 32 H 1.08994 * 109.47171 * 59.99819 * 3 2 1 33 33 H 1.09001 * 109.46974 * 299.99678 * 3 2 1 34 34 H 0.96997 * 120.00268 * 0.02562 * 4 3 2 35 35 H 1.08994 * 109.47115 * 60.00277 * 7 5 4 36 36 H 1.09001 * 109.46777 * 300.00291 * 7 5 4 37 37 H 1.09008 * 109.47537 * 59.99858 * 8 7 5 38 38 H 1.09005 * 109.47149 * 299.99993 * 8 7 5 39 39 H 1.08994 * 109.47104 * 59.99558 * 9 8 7 40 40 H 1.09005 * 109.46939 * 300.00067 * 9 8 7 41 41 H 1.07996 * 119.95285 * 359.97438 * 14 13 11 42 42 H 1.08003 * 120.04948 * 179.75205 * 15 14 13 43 43 H 0.97002 * 119.99961 * 180.02562 * 20 19 17 44 44 H 1.08003 * 120.05517 * 179.70820 * 25 16 15 45 45 H 1.08001 * 119.94895 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1788 2.6098 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6858 2.6099 0.0003 8 6 6.1958 4.0524 0.0004 9 6 7.7258 4.0525 -0.0002 10 8 8.2097 5.4214 -0.0007 11 6 9.5459 5.5981 -0.0007 12 8 10.2860 4.6345 -0.0008 13 6 10.1096 6.9612 -0.0018 14 6 11.4985 7.1423 -0.0013 15 6 12.0238 8.4000 0.0030 16 6 11.1674 9.5188 -0.0033 17 6 11.7066 10.8226 -0.0039 18 1 11.1295 11.6459 0.3907 19 6 12.9920 11.0496 -0.5168 20 7 13.5496 10.1633 -1.2978 21 14 13.9069 12.6195 -0.0829 22 1 14.7909 12.3708 1.0841 23 1 14.7279 13.0505 -1.2429 24 1 12.9293 13.6850 0.2547 25 6 9.7709 9.3318 -0.0033 26 6 9.2544 8.0705 -0.0028 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9900 0.6026 0.0006 35 1 6.0492 2.0958 -0.8895 36 1 6.0491 2.0963 0.8904 37 1 5.8324 4.5662 0.8904 38 1 5.8324 4.5663 -0.8896 39 1 8.0888 3.5389 -0.8904 40 1 8.0895 3.5385 0.8896 41 1 12.1542 6.2842 0.0003 42 1 13.0949 8.5388 0.0075 43 1 14.4388 10.3201 -1.6522 44 1 9.1107 10.1866 -0.0034 45 1 8.1841 7.9261 -0.0032 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840378307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:21 Heat of formation + Delta-G solvation = -155.377463 kcal Electronic energy + Delta-G solvation = -24628.480668 eV Core-core repulsion = 20801.678702 eV Total energy + Delta-G solvation = -3826.801966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.26551 -40.77057 -39.27841 -37.47101 -36.81742 -35.76341 -34.77822 -33.49711 -32.11468 -31.46085 -29.17356 -27.87900 -26.53754 -24.19190 -23.09391 -22.73930 -22.51769 -21.65712 -21.11075 -19.41921 -18.64730 -18.19149 -17.62121 -17.41695 -17.10225 -17.00817 -16.88068 -16.01632 -15.77571 -15.35911 -15.10871 -14.99266 -14.74186 -14.18332 -14.04620 -13.83730 -13.80951 -13.60643 -13.44739 -13.30779 -13.19011 -12.87859 -12.84402 -12.66525 -12.40504 -12.35020 -12.15914 -12.03937 -11.80687 -11.75962 -11.41802 -11.39828 -11.24853 -11.16678 -10.94574 -10.11894 -9.63950 -9.52874 -8.85281 -6.55449 0.24347 1.13490 1.36645 1.41477 1.55111 1.61613 1.79470 1.89617 2.14987 2.31180 2.68169 3.62277 3.66599 3.89674 3.90097 3.92636 4.06850 4.22837 4.29416 4.35044 4.35767 4.41148 4.41307 4.53434 4.65623 4.66311 4.76662 4.87935 4.92851 4.97988 5.02927 5.11547 5.14557 5.18761 5.20467 5.23830 5.33762 5.47753 5.51576 5.55081 5.78306 5.92407 5.97963 6.14964 6.48938 6.54310 6.69978 6.81796 7.04478 7.25310 8.10071 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.041742 B = 0.001638 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.620354 B =17094.423000 C =17645.504147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.114 3.886 4 N -0.719 5.719 5 C 0.510 3.490 6 O -0.589 6.589 7 C -0.128 4.128 8 C -0.096 4.096 9 C 0.064 3.936 10 O -0.365 6.365 11 C 0.521 3.479 12 O -0.570 6.570 13 C -0.293 4.293 14 C -0.040 4.040 15 C -0.200 4.200 16 C 0.105 3.895 17 C -0.460 4.460 18 H 0.095 0.905 19 C 0.035 3.965 20 N -0.794 5.794 21 Si 0.992 3.008 22 H -0.260 1.260 23 H -0.265 1.265 24 H -0.252 1.252 25 C -0.251 4.251 26 C -0.023 4.023 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.419 0.581 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.299 0.701 44 H 0.116 0.884 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.130 -17.105 1.803 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.372 5.372 5 C 0.297 3.703 6 O -0.469 6.469 7 C -0.167 4.167 8 C -0.134 4.134 9 C -0.010 4.010 10 O -0.282 6.282 11 C 0.373 3.627 12 O -0.465 6.465 13 C -0.296 4.296 14 C -0.059 4.059 15 C -0.220 4.220 16 C 0.101 3.899 17 C -0.486 4.486 18 H 0.113 0.887 19 C -0.185 4.185 20 N -0.417 5.417 21 Si 0.811 3.189 22 H -0.185 1.185 23 H -0.189 1.189 24 H -0.175 1.175 25 C -0.270 4.270 26 C -0.041 4.041 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.256 0.744 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.134 0.866 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.214 -16.736 1.637 23.360 hybrid contribution 0.733 0.125 -0.063 0.747 sum -15.481 -16.611 1.575 22.761 Atomic orbital electron populations 1.21706 0.94442 1.02774 1.02096 1.21681 0.97031 0.93847 1.03782 1.21447 0.79486 0.98812 1.01230 1.45936 1.07585 1.08831 1.74881 1.21035 0.91034 0.83423 0.74775 1.90726 1.71592 1.33255 1.51332 1.21512 0.90219 0.97387 1.07595 1.21161 0.90977 0.97406 1.03896 1.23160 0.94959 0.79893 1.03003 1.86544 1.23783 1.33082 1.84783 1.21273 0.79943 0.89932 0.71543 1.90666 1.60954 1.43519 1.51393 1.18483 0.93640 0.89170 1.28270 1.20532 0.93160 0.96774 0.95402 1.20916 0.99573 0.91471 1.09997 1.18206 0.92066 0.94034 0.85574 1.20272 1.00319 0.94799 1.33193 0.88665 1.27075 0.97517 1.02374 0.91569 1.69778 1.15740 1.36396 1.19784 0.85027 0.78235 0.76470 0.79133 1.18461 1.18928 1.17484 1.20950 0.94741 0.96405 1.14883 1.20767 0.98541 0.91757 0.93062 0.92703 0.91067 0.92676 0.90191 0.90164 0.92867 0.92896 0.74385 0.85700 0.85629 0.91416 0.91534 0.90851 0.90693 0.87978 0.87093 0.88953 0.86614 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.31 16 2 C -0.13 -0.81 6.05 30.60 0.19 -0.62 16 3 C 0.11 1.46 5.67 86.38 0.49 1.95 16 4 N -0.72 -8.71 5.56 -463.07 -2.57 -11.28 16 5 C 0.51 9.83 7.83 87.66 0.69 10.52 16 6 O -0.59 -17.65 15.98 -3.04 -0.05 -17.70 16 7 C -0.13 -1.84 5.70 29.85 0.17 -1.67 16 8 C -0.10 -2.25 4.88 30.59 0.15 -2.10 16 9 C 0.06 1.77 5.48 71.98 0.39 2.16 16 10 O -0.36 -13.89 9.45 -56.87 -0.54 -14.43 16 11 C 0.52 23.29 7.89 70.27 0.55 23.84 16 12 O -0.57 -26.89 16.11 19.82 0.32 -26.57 16 13 C -0.29 -14.16 5.89 -19.95 -0.12 -14.28 16 14 C -0.04 -2.01 9.52 22.26 0.21 -1.80 16 15 C -0.20 -10.53 8.63 22.47 0.19 -10.33 16 16 C 0.10 5.45 5.57 -21.28 -0.12 5.33 16 17 C -0.46 -22.84 9.04 23.46 0.21 -22.63 16 18 H 0.10 4.43 7.91 -2.91 -0.02 4.41 16 19 C 0.03 1.60 5.13 85.36 0.44 2.04 16 20 N -0.79 -38.62 11.00 21.88 0.24 -38.38 16 21 Si 0.99 34.39 29.60 68.60 2.03 36.42 16 22 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 23 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 24 H -0.25 -8.41 7.11 99.48 0.71 -7.70 16 25 C -0.25 -12.01 9.73 22.47 0.22 -11.79 16 26 C -0.02 -1.05 9.55 22.26 0.21 -0.83 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.42 2.02 8.47 -92.71 -0.79 1.23 16 35 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.77 8.10 -2.38 -0.02 1.75 16 38 H 0.07 1.75 8.10 -2.38 -0.02 1.74 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.10 5.00 7.63 -2.91 -0.02 4.98 16 42 H 0.11 5.94 6.20 -2.91 -0.02 5.92 16 43 H 0.30 12.91 8.29 -92.71 -0.77 12.14 16 44 H 0.12 5.04 8.06 -2.91 -0.02 5.02 16 45 H 0.13 5.08 7.59 -2.91 -0.02 5.06 16 Total: -1.00 -68.73 385.39 4.23 -64.50 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.21 Total: 27.97 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.59 Total: -20.53 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -2.33 Total: -49.66 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: -0.27 Total: -58.70 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Total: -68.73 4.23 -64.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840378307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.881 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds