Wall clock time and date at job start Tue Mar 31 2020 13:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.70328 * 2 1 4 4 C 1.53192 * 109.58918 * 239.64318 * 2 1 3 5 5 H 1.09000 * 109.50139 * 174.89559 * 4 2 1 6 6 C 1.53005 * 109.49462 * 54.83098 * 4 2 1 7 7 O 1.42902 * 109.47137 * 175.00008 * 6 4 2 8 8 C 1.53037 * 109.31277 * 294.85380 * 4 2 1 9 9 C 1.53045 * 109.53611 * 298.62795 * 8 4 2 10 10 C 1.52764 * 109.38113 * 61.24497 * 9 8 4 11 11 N 1.46926 * 109.58482 * 120.35475 * 2 1 3 12 12 C 1.34781 * 120.63194 * 246.15483 * 11 2 1 13 13 O 1.21590 * 119.99798 * 354.16539 * 12 11 2 14 14 C 1.47528 * 120.00086 * 174.16484 * 12 11 2 15 15 C 1.39674 * 120.19440 * 306.24100 * 14 12 11 16 16 C 1.37836 * 119.91342 * 180.27562 * 15 14 12 17 17 C 1.38572 * 120.32567 * 359.72051 * 16 15 14 18 18 C 1.38024 * 120.40375 * 0.02562 * 17 16 15 19 19 C 1.38842 * 120.06843 * 359.97438 * 18 17 16 20 20 O 1.35521 * 120.15853 * 179.97438 * 19 18 17 21 21 C 1.34819 * 117.00047 * 5.45286 * 20 19 18 22 22 H 1.07999 * 119.99477 * 354.94620 * 21 20 19 23 23 C 1.38697 * 119.99916 * 174.67611 * 21 20 19 24 24 N 1.31511 * 119.99940 * 0.27145 * 23 21 20 25 25 Si 1.86803 * 119.99814 * 180.27290 * 23 21 20 26 26 H 1.48500 * 109.46990 * 89.99463 * 25 23 21 27 27 H 1.48495 * 109.47180 * 209.99961 * 25 23 21 28 28 H 1.48506 * 109.46899 * 330.00088 * 25 23 21 29 29 H 1.08997 * 109.47353 * 299.64768 * 1 2 3 30 30 H 1.09009 * 109.46776 * 59.64223 * 1 2 3 31 31 H 1.09000 * 109.46931 * 179.64302 * 1 2 3 32 32 H 1.09000 * 109.47540 * 295.00156 * 6 4 2 33 33 H 1.09004 * 109.46953 * 55.00560 * 6 4 2 34 34 H 0.96701 * 114.00299 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46551 * 58.65041 * 8 4 2 36 36 H 1.09005 * 109.46167 * 178.61657 * 8 4 2 37 37 H 1.08997 * 109.50005 * 181.31676 * 9 8 4 38 38 H 1.08997 * 109.50005 * 301.38411 * 9 8 4 39 39 H 1.08991 * 109.51102 * 185.70725 * 10 9 8 40 40 H 1.09001 * 109.43457 * 65.41614 * 10 9 8 41 41 H 1.07993 * 120.04392 * 359.97438 * 15 14 12 42 42 H 1.08001 * 119.83370 * 179.70414 * 16 15 14 43 43 H 1.08002 * 119.79570 * 180.02562 * 17 16 15 44 44 H 1.07992 * 119.96275 * 179.97438 * 18 17 16 45 45 H 0.96999 * 120.00195 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 3.1298 -0.6504 -1.2913 6 6 1.4321 -0.0959 -2.4967 7 8 1.9994 -0.6987 -3.6615 8 6 1.6414 -2.2041 -1.1701 9 6 2.2800 -2.8464 0.0635 10 6 1.7740 -2.1421 1.3211 11 7 2.0225 -0.6995 1.1945 12 6 2.6944 -0.0318 2.1532 13 8 2.9909 1.1357 1.9870 14 6 3.0701 -0.7173 3.4044 15 6 2.0991 -1.3718 4.1657 16 6 2.4557 -2.0056 5.3366 17 6 3.7749 -2.0020 5.7605 18 6 4.7461 -1.3637 5.0158 19 6 4.4054 -0.7201 3.8337 20 8 5.3575 -0.0925 3.1014 21 6 6.6339 -0.2248 3.5147 22 1 6.8517 -0.7414 4.4378 23 6 7.6676 0.2977 2.7517 24 7 7.4022 0.9268 1.6277 25 14 9.4367 0.1078 3.3206 26 1 10.0005 -1.1518 2.7721 27 1 10.2385 1.2606 2.8376 28 1 9.4774 0.0634 4.8044 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3633 -1.0277 -0.0064 32 1 0.3537 -0.2543 -2.4942 33 1 1.6423 0.9737 -2.5021 34 1 1.6574 -0.3446 -4.4939 35 1 0.5565 -2.2815 -1.0993 36 1 1.9844 -2.7202 -2.0669 37 1 2.0122 -3.9022 0.1037 38 1 3.3639 -2.7480 0.0050 39 1 2.3023 -2.5288 2.1924 40 1 0.7042 -2.3203 1.4310 41 1 1.0695 -1.3772 3.8398 42 1 1.7030 -2.5072 5.9267 43 1 4.0448 -2.5016 6.6791 44 1 5.7721 -1.3650 5.3531 45 1 8.1251 1.2920 1.0939 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840565824.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:53 Heat of formation + Delta-G solvation = -87.424307 kcal Electronic energy + Delta-G solvation = -28043.342150 eV Core-core repulsion = 24219.486854 eV Total energy + Delta-G solvation = -3823.855296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.28641 -38.98002 -37.50919 -36.36644 -36.18850 -33.02947 -32.37006 -32.23984 -30.34511 -28.98344 -28.10271 -25.77721 -25.42663 -24.21762 -22.44351 -22.05694 -21.47056 -19.82172 -18.32924 -18.04791 -17.48092 -17.18540 -16.41687 -15.54014 -15.29095 -14.90572 -14.69930 -14.54693 -14.34663 -14.14427 -13.79590 -13.65697 -13.38917 -13.23492 -13.12979 -12.75993 -12.68088 -12.29545 -12.22264 -11.95568 -11.73696 -11.54103 -11.28301 -11.14981 -11.02340 -10.91405 -10.79885 -10.57974 -10.46240 -10.35592 -10.27833 -9.87879 -9.60492 -8.99397 -8.89196 -8.24515 -8.16582 -7.33548 -6.47302 -4.07489 1.82707 2.29107 3.11372 3.11952 3.17120 3.30816 3.56554 3.92553 4.22517 4.48689 4.69567 4.91766 5.01963 5.04812 5.14182 5.17012 5.21762 5.33390 5.33748 5.42098 5.46483 5.53522 5.54583 5.66403 5.72321 5.80134 5.80701 5.95238 5.98282 6.01423 6.08937 6.16050 6.24616 6.27786 6.40432 6.56461 6.57209 6.65464 6.92815 7.01391 7.05589 7.24698 7.29016 7.56962 7.67456 7.89446 7.98269 8.91834 8.95328 9.63370 10.68264 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011452 B = 0.004870 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.507427 B = 5748.182007 C = 7346.895109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.100 0.900 4 C -0.098 4.098 5 H 0.085 0.915 6 C 0.083 3.917 7 O -0.571 6.571 8 C -0.107 4.107 9 C -0.138 4.138 10 C 0.109 3.891 11 N -0.609 5.609 12 C 0.581 3.419 13 O -0.522 6.522 14 C -0.215 4.215 15 C -0.041 4.041 16 C -0.224 4.224 17 C -0.056 4.056 18 C -0.234 4.234 19 C 0.187 3.813 20 O -0.149 6.149 21 C -0.400 4.400 22 H 0.094 0.906 23 C 0.044 3.956 24 N -0.844 5.844 25 Si 0.942 3.058 26 H -0.272 1.272 27 H -0.276 1.276 28 H -0.266 1.266 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.376 0.624 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.332 -7.003 -4.070 15.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.043 3.957 3 H 0.118 0.882 4 C -0.117 4.117 5 H 0.103 0.897 6 C 0.005 3.995 7 O -0.376 6.376 8 C -0.144 4.144 9 C -0.176 4.176 10 C -0.014 4.014 11 N -0.344 5.344 12 C 0.371 3.629 13 O -0.397 6.397 14 C -0.220 4.220 15 C -0.060 4.060 16 C -0.243 4.243 17 C -0.074 4.074 18 C -0.254 4.254 19 C 0.129 3.871 20 O -0.049 6.049 21 C -0.475 4.475 22 H 0.112 0.888 23 C -0.163 4.163 24 N -0.477 5.477 25 Si 0.766 3.234 26 H -0.198 1.198 27 H -0.201 1.201 28 H -0.190 1.190 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.222 0.778 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.679 -6.395 -4.098 14.780 hybrid contribution 0.615 0.143 -0.047 0.634 sum -12.064 -6.251 -4.145 14.206 Atomic orbital electron populations 1.22232 0.95553 1.02219 1.02108 1.20895 0.93289 0.97715 0.83827 0.88233 1.21486 1.02151 0.95786 0.92319 0.89666 1.22242 0.96034 0.95977 0.85264 1.86501 1.69179 1.65899 1.16021 1.21500 0.99997 0.94744 0.98207 1.21873 1.01831 0.99160 0.94734 1.21647 1.00139 0.80407 0.99200 1.47970 1.57530 1.08725 1.20173 1.18210 0.75805 0.86079 0.82818 1.90767 1.52221 1.16957 1.79738 1.18706 0.92619 1.11500 0.99172 1.20698 0.97013 0.94160 0.94140 1.20474 0.96179 1.08314 0.99331 1.20883 0.92830 0.96016 0.97676 1.21133 1.00711 1.06179 0.97338 1.19210 0.88589 0.89198 0.90098 1.84021 1.15203 1.58584 1.47117 1.21412 0.79027 1.38983 1.08106 0.88823 1.25360 0.99926 0.95831 0.95200 1.70072 1.33366 1.32170 1.12064 0.85703 0.80234 0.78351 0.79093 1.19772 1.20142 1.19046 0.92230 0.91745 0.92046 0.93374 0.93460 0.77812 0.92065 0.91287 0.90981 0.91133 0.88860 0.92173 0.86788 0.87185 0.87163 0.85069 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 8.52 37.16 0.32 -1.57 16 2 C 0.15 2.26 2.81 -67.60 -0.19 2.07 16 3 H 0.10 1.80 7.00 -51.93 -0.36 1.43 16 4 C -0.10 -1.40 2.35 -90.50 -0.21 -1.62 16 5 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 6 C 0.08 0.95 5.77 37.16 0.21 1.16 16 7 O -0.57 -6.68 13.18 -35.23 -0.46 -7.14 16 8 C -0.11 -1.34 4.87 -26.69 -0.13 -1.47 16 9 C -0.14 -1.84 6.07 -26.83 -0.16 -2.00 16 10 C 0.11 1.56 5.13 -3.93 -0.02 1.54 16 11 N -0.61 -10.73 2.68 -166.70 -0.45 -11.18 16 12 C 0.58 13.09 6.82 -12.47 -0.09 13.00 16 13 O -0.52 -14.08 16.17 2.05 0.03 -14.04 16 14 C -0.22 -4.71 4.61 -104.81 -0.48 -5.19 16 15 C -0.04 -0.72 7.79 -39.19 -0.31 -1.03 16 16 C -0.22 -3.65 10.03 -39.61 -0.40 -4.05 16 17 C -0.06 -0.97 10.03 -39.54 -0.40 -1.37 16 18 C -0.23 -5.01 9.16 -39.44 -0.36 -5.37 16 19 C 0.19 4.62 6.65 -38.60 -0.26 4.36 16 20 O -0.15 -4.39 8.96 -2.45 -0.02 -4.41 16 21 C -0.40 -11.29 9.49 30.90 0.29 -11.00 16 22 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 23 C 0.04 1.21 5.49 -17.52 -0.10 1.12 16 24 N -0.84 -25.43 13.67 55.48 0.76 -24.67 16 25 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 28 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.61 6.52 -51.92 -0.34 0.27 16 31 H 0.06 0.63 5.73 -51.93 -0.30 0.34 16 32 H 0.05 0.45 6.68 -51.93 -0.35 0.10 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.38 2.51 9.12 45.56 0.42 2.93 16 35 H 0.06 0.66 6.49 -51.93 -0.34 0.32 16 36 H 0.07 0.88 7.80 -51.93 -0.40 0.48 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 1.44 5.40 -51.93 -0.28 1.16 16 40 H 0.06 0.70 7.52 -51.93 -0.39 0.31 16 41 H 0.11 1.67 7.76 -52.49 -0.41 1.26 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 44 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -35.34 357.10 -7.47 -42.81 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.41 Total: 9.06 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -2.27 Total: -11.41 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.31 Total: -35.85 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.45 Total: -25.60 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.34 -7.47 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840565824.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.617 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds