Wall clock time and date at job start Tue Mar 31 2020 13:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58790 * 2 1 4 4 C 1.53196 * 109.58562 * 239.57690 * 2 1 3 5 5 C 1.53040 * 109.31445 * 185.57794 * 4 2 1 6 6 C 1.53043 * 109.53645 * 61.36244 * 5 4 2 7 7 C 1.53622 * 109.24455 * 298.51287 * 6 5 4 8 8 N 1.46921 * 109.58676 * 120.28763 * 2 1 3 9 9 C 1.34773 * 120.63122 * 353.37504 * 8 2 1 10 10 O 1.21283 * 120.00169 * 354.17687 * 9 8 2 11 11 C 1.50701 * 120.00208 * 174.18605 * 9 8 2 12 12 O 1.42899 * 109.47207 * 179.97438 * 11 9 8 13 13 C 1.35897 * 116.99983 * 179.97438 * 12 11 9 14 14 C 1.38830 * 120.02399 * 359.97438 * 13 12 11 15 15 C 1.38186 * 120.08562 * 180.27688 * 14 13 12 16 16 C 1.38152 * 120.12180 * 359.49372 * 15 14 13 17 17 C 1.38908 * 120.04134 * 0.51181 * 16 15 14 18 18 O 1.35749 * 120.04125 * 179.77111 * 17 16 15 19 19 C 1.34830 * 116.99836 * 185.27627 * 18 17 16 20 20 H 1.08004 * 119.99694 * 354.96159 * 19 18 17 21 21 C 1.38647 * 119.99903 * 174.96532 * 19 18 17 22 22 N 1.31562 * 120.00294 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99782 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46954 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46900 * 120.00195 * 23 21 19 26 26 H 1.48495 * 109.47118 * 239.99662 * 23 21 19 27 27 C 1.38570 * 120.02163 * 180.02562 * 13 12 11 28 28 H 1.09004 * 109.46856 * 305.53985 * 1 2 3 29 29 H 1.09006 * 109.47057 * 65.53607 * 1 2 3 30 30 H 1.08997 * 109.47366 * 185.53993 * 1 2 3 31 31 H 1.08998 * 109.49598 * 305.53079 * 4 2 1 32 32 H 1.09001 * 109.49768 * 65.62454 * 4 2 1 33 33 H 1.09001 * 109.46335 * 181.38067 * 5 4 2 34 34 H 1.09002 * 109.46191 * 301.36270 * 5 4 2 35 35 H 1.09007 * 109.49721 * 58.58828 * 6 5 4 36 36 H 1.08995 * 109.49882 * 178.64809 * 6 5 4 37 37 H 1.08999 * 109.73959 * 295.11602 * 7 6 5 38 38 H 1.08997 * 109.66372 * 174.54511 * 7 6 5 39 39 H 1.09001 * 109.47593 * 59.99468 * 11 9 8 40 40 H 1.09004 * 109.46689 * 299.99423 * 11 9 8 41 41 H 1.08003 * 119.95672 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.94034 * 179.72469 * 15 14 13 43 43 H 1.08003 * 119.98487 * 180.23203 * 16 15 14 44 44 H 0.96992 * 120.00057 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.06365 * 359.95489 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 3.5674 -0.8494 -1.1692 6 6 3.9569 -1.6657 0.0654 7 6 3.4657 -0.9405 1.3274 8 7 2.0225 -0.6981 1.1953 9 6 1.1674 -1.1036 2.1548 10 8 -0.0054 -0.8018 2.0891 11 6 1.6686 -1.9320 3.3097 12 8 0.5814 -2.2338 4.1866 13 6 0.8647 -2.9801 5.2864 14 6 2.1635 -3.4134 5.5161 15 6 2.4519 -4.1771 6.6311 16 6 1.4512 -4.5031 7.5260 17 6 0.1498 -4.0724 7.3011 18 8 -0.8344 -4.3967 8.1780 19 6 -2.0918 -4.0414 7.8456 20 1 -2.2697 -3.4522 6.9581 21 6 -3.1564 -4.4323 8.6432 22 7 -2.9398 -5.1503 9.7241 23 14 -4.8985 -3.9394 8.1830 24 1 -4.8726 -3.1403 6.9317 25 1 -5.7192 -5.1593 7.9738 26 1 -5.4887 -3.1275 9.2773 27 6 -0.1428 -3.3100 6.1788 28 1 -0.3633 0.5974 0.8363 29 1 -0.3633 0.4256 -0.9355 30 1 -0.3634 -1.0228 0.0992 31 1 1.6029 -1.7268 -1.2893 32 1 1.7659 -0.1694 -2.1367 33 1 3.9378 -1.3474 -2.0653 34 1 4.0061 0.1460 -1.0993 35 1 3.4982 -2.6529 0.0084 36 1 5.0411 -1.7701 0.1054 37 1 3.9878 0.0106 1.4323 38 1 3.6532 -1.5612 2.2036 39 1 2.4298 -1.3733 3.8543 40 1 2.0992 -2.8593 2.9318 41 1 2.9487 -3.1566 4.8204 42 1 3.4623 -4.5167 6.8052 43 1 1.6798 -5.0970 8.3986 44 1 -3.6845 -5.4235 10.2822 45 1 -1.1538 -2.9739 6.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842108336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:07 Heat of formation + Delta-G solvation = -62.087757 kcal Electronic energy + Delta-G solvation = -26563.930250 eV Core-core repulsion = 22741.173630 eV Total energy + Delta-G solvation = -3822.756620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.83982 -39.53402 -38.19275 -37.38456 -35.61341 -33.50788 -32.99333 -32.25126 -30.12148 -28.70249 -28.27965 -27.29320 -25.33493 -24.90193 -22.68476 -21.90917 -21.56879 -20.87211 -19.25226 -18.32599 -17.83136 -16.80091 -16.55945 -16.21070 -15.58484 -15.22907 -15.06823 -14.99627 -14.73555 -14.51838 -14.24107 -14.03448 -13.74426 -13.62068 -13.20062 -13.08965 -12.77465 -12.58371 -12.36924 -12.33114 -12.04329 -11.70715 -11.60214 -11.40429 -11.36534 -11.11933 -11.05628 -11.01307 -10.97633 -10.56870 -10.38730 -10.34719 -9.44899 -9.15202 -8.86244 -8.83099 -7.73412 -7.27863 -6.44761 -4.03802 2.19538 2.30239 2.39881 2.45327 3.16476 3.18875 3.25322 3.59220 4.00141 4.25513 4.31298 4.40996 4.50951 4.53817 4.63987 4.84615 4.88934 4.98830 5.01202 5.07188 5.10740 5.21420 5.24855 5.28605 5.41793 5.46744 5.52512 5.56293 5.61450 5.64771 5.71914 5.83697 6.02901 6.08785 6.13336 6.26348 6.33709 6.47724 6.65058 6.98987 7.07420 7.11364 7.19296 7.42854 7.53712 7.97480 8.01836 8.05254 9.01378 9.67819 10.72820 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.002804 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.129597 B = 9984.260580 C =11368.030710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.147 3.853 3 H 0.071 0.929 4 C -0.133 4.133 5 C -0.120 4.120 6 C -0.137 4.137 7 C 0.104 3.896 8 N -0.612 5.612 9 C 0.518 3.482 10 O -0.503 6.503 11 C 0.045 3.955 12 O -0.295 6.295 13 C 0.165 3.835 14 C -0.300 4.300 15 C -0.043 4.043 16 C -0.219 4.219 17 C 0.184 3.816 18 O -0.170 6.170 19 C -0.392 4.392 20 H 0.096 0.904 21 C 0.041 3.959 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.260 4.260 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.270 0.730 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.256 8.517 -20.428 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.044 3.956 3 H 0.089 0.911 4 C -0.171 4.171 5 C -0.158 4.158 6 C -0.175 4.175 7 C -0.019 4.019 8 N -0.350 5.350 9 C 0.305 3.695 10 O -0.377 6.377 11 C -0.034 4.034 12 O -0.208 6.208 13 C 0.120 3.880 14 C -0.320 4.320 15 C -0.062 4.062 16 C -0.239 4.239 17 C 0.129 3.871 18 O -0.072 6.072 19 C -0.468 4.468 20 H 0.113 0.887 21 C -0.164 4.164 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.280 4.280 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.080 0.920 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.247 8.534 -20.090 26.066 hybrid contribution -0.388 0.159 -0.314 0.524 sum 13.859 8.693 -20.403 26.152 Atomic orbital electron populations 1.22241 0.92407 1.04058 1.01280 1.21277 0.96001 0.94889 0.83394 0.91066 1.22036 0.95904 1.01641 0.97520 1.21521 0.95789 1.00480 0.97989 1.22013 1.01347 0.99642 0.94516 1.21907 0.80240 1.00826 0.98946 1.48060 1.07097 1.59223 1.20574 1.20204 0.86261 0.80117 0.82896 1.90800 1.16899 1.54542 1.75483 1.22388 0.90500 0.99651 0.90858 1.86112 1.33594 1.68007 1.33067 1.18673 0.93380 0.90474 0.85479 1.20585 0.94880 1.12766 1.03752 1.20380 0.97624 0.95339 0.92819 1.20171 0.90989 1.09396 1.03320 1.19027 0.89599 0.90784 0.87683 1.83999 1.15081 1.68731 1.39397 1.21467 0.79562 1.34260 1.11515 0.88665 1.25305 0.99701 0.96053 0.95324 1.70050 1.32469 1.33857 1.13232 0.85640 0.80336 0.78586 0.78936 1.18826 1.20084 1.20083 1.20329 0.99778 1.10229 0.97674 0.90062 0.93661 0.91552 0.91315 0.90668 0.91537 0.91704 0.91189 0.90470 0.90847 0.89579 0.89540 0.89469 0.87268 0.86679 0.86293 0.92010 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.61 37.16 0.28 -1.31 16 2 C 0.15 1.32 3.49 -67.60 -0.24 1.08 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -0.91 5.37 -26.61 -0.14 -1.05 16 5 C -0.12 -0.64 5.88 -26.69 -0.16 -0.80 16 6 C -0.14 -0.74 6.10 -26.39 -0.16 -0.90 16 7 C 0.10 0.67 6.38 -3.48 -0.02 0.65 16 8 N -0.61 -6.04 2.97 -164.96 -0.49 -6.53 16 9 C 0.52 7.08 7.58 -10.99 -0.08 7.00 16 10 O -0.50 -8.84 12.07 -14.36 -0.17 -9.01 16 11 C 0.05 0.60 3.58 36.01 0.13 0.73 16 12 O -0.29 -5.61 9.67 -39.33 -0.38 -5.99 16 13 C 0.16 3.33 6.68 -39.24 -0.26 3.07 16 14 C -0.30 -5.18 9.04 -39.38 -0.36 -5.54 16 15 C -0.04 -0.76 10.03 -39.63 -0.40 -1.16 16 16 C -0.22 -4.65 9.99 -39.36 -0.39 -5.05 16 17 C 0.18 4.57 6.65 -39.12 -0.26 4.31 16 18 O -0.17 -4.91 9.76 0.05 0.00 -4.91 16 19 C -0.39 -11.26 9.49 30.88 0.29 -10.97 16 20 H 0.10 2.60 5.20 -52.48 -0.27 2.33 16 21 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 22 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 23 Si 0.94 21.21 29.55 -169.99 -5.02 16.18 16 24 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.26 -6.12 9.10 -39.25 -0.36 -6.48 16 28 H 0.08 1.10 6.54 -51.93 -0.34 0.76 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.88 6.96 -51.93 -0.36 0.52 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.49 5.93 -51.93 -0.31 0.18 16 39 H 0.09 0.95 7.21 -51.93 -0.37 0.58 16 40 H 0.09 0.98 7.45 -51.93 -0.39 0.59 16 41 H 0.11 1.46 6.29 -52.48 -0.33 1.13 16 42 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 43 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.14 3.35 5.63 -52.48 -0.30 3.05 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -33.94 360.38 -8.55 -42.49 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.45 Total: 2.46 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -2.22 Total: -15.37 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.27 Total: -31.28 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.55 Total: -19.91 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.94 -8.55 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.599 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds