Wall clock time and date at job start Tue Mar 31 2020 13:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.58790 * 2 1 4 4 C 1.53196 * 109.58562 * 239.57690 * 2 1 3 5 5 C 1.53040 * 109.31445 * 185.57794 * 4 2 1 6 6 C 1.53043 * 109.53645 * 61.36244 * 5 4 2 7 7 C 1.53622 * 109.24455 * 298.51287 * 6 5 4 8 8 N 1.46921 * 109.58676 * 120.28763 * 2 1 3 9 9 C 1.34773 * 120.63122 * 353.37504 * 8 2 1 10 10 O 1.21283 * 120.00169 * 354.17687 * 9 8 2 11 11 C 1.50701 * 120.00208 * 174.18605 * 9 8 2 12 12 O 1.42899 * 109.47207 * 179.97438 * 11 9 8 13 13 C 1.35897 * 116.99983 * 179.97438 * 12 11 9 14 14 C 1.38830 * 120.02399 * 359.97438 * 13 12 11 15 15 C 1.38186 * 120.08562 * 180.27688 * 14 13 12 16 16 C 1.38152 * 120.12180 * 359.49372 * 15 14 13 17 17 C 1.38908 * 120.04134 * 0.51181 * 16 15 14 18 18 O 1.35749 * 120.04125 * 179.77111 * 17 16 15 19 19 C 1.34830 * 116.99836 * 185.27627 * 18 17 16 20 20 H 1.08004 * 119.99694 * 354.96159 * 19 18 17 21 21 C 1.38647 * 119.99903 * 174.96532 * 19 18 17 22 22 N 1.31562 * 120.00294 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99782 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46954 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46900 * 120.00195 * 23 21 19 26 26 H 1.48495 * 109.47118 * 239.99662 * 23 21 19 27 27 C 1.38570 * 120.02163 * 180.02562 * 13 12 11 28 28 H 1.09004 * 109.46856 * 305.53985 * 1 2 3 29 29 H 1.09006 * 109.47057 * 65.53607 * 1 2 3 30 30 H 1.08997 * 109.47366 * 185.53993 * 1 2 3 31 31 H 1.08998 * 109.49598 * 305.53079 * 4 2 1 32 32 H 1.09001 * 109.49768 * 65.62454 * 4 2 1 33 33 H 1.09001 * 109.46335 * 181.38067 * 5 4 2 34 34 H 1.09002 * 109.46191 * 301.36270 * 5 4 2 35 35 H 1.09007 * 109.49721 * 58.58828 * 6 5 4 36 36 H 1.08995 * 109.49882 * 178.64809 * 6 5 4 37 37 H 1.08999 * 109.73959 * 295.11602 * 7 6 5 38 38 H 1.08997 * 109.66372 * 174.54511 * 7 6 5 39 39 H 1.09001 * 109.47593 * 59.99468 * 11 9 8 40 40 H 1.09004 * 109.46689 * 299.99423 * 11 9 8 41 41 H 1.08003 * 119.95672 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.94034 * 179.72469 * 15 14 13 43 43 H 1.08003 * 119.98487 * 180.23203 * 16 15 14 44 44 H 0.96992 * 120.00057 * 179.97438 * 22 21 19 45 45 H 1.08003 * 120.06365 * 359.95489 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2446 5 6 3.5674 -0.8494 -1.1692 6 6 3.9569 -1.6657 0.0654 7 6 3.4657 -0.9405 1.3274 8 7 2.0225 -0.6981 1.1953 9 6 1.1674 -1.1036 2.1548 10 8 -0.0054 -0.8018 2.0891 11 6 1.6686 -1.9320 3.3097 12 8 0.5814 -2.2338 4.1866 13 6 0.8647 -2.9801 5.2864 14 6 2.1635 -3.4134 5.5161 15 6 2.4519 -4.1771 6.6311 16 6 1.4512 -4.5031 7.5260 17 6 0.1498 -4.0724 7.3011 18 8 -0.8344 -4.3967 8.1780 19 6 -2.0918 -4.0414 7.8456 20 1 -2.2697 -3.4522 6.9581 21 6 -3.1564 -4.4323 8.6432 22 7 -2.9398 -5.1503 9.7241 23 14 -4.8985 -3.9394 8.1830 24 1 -4.8726 -3.1403 6.9317 25 1 -5.7192 -5.1593 7.9738 26 1 -5.4887 -3.1275 9.2773 27 6 -0.1428 -3.3100 6.1788 28 1 -0.3633 0.5974 0.8363 29 1 -0.3633 0.4256 -0.9355 30 1 -0.3634 -1.0228 0.0992 31 1 1.6029 -1.7268 -1.2893 32 1 1.7659 -0.1694 -2.1367 33 1 3.9378 -1.3474 -2.0653 34 1 4.0061 0.1460 -1.0993 35 1 3.4982 -2.6529 0.0084 36 1 5.0411 -1.7701 0.1054 37 1 3.9878 0.0106 1.4323 38 1 3.6532 -1.5612 2.2036 39 1 2.4298 -1.3733 3.8543 40 1 2.0992 -2.8593 2.9318 41 1 2.9487 -3.1566 4.8204 42 1 3.4623 -4.5167 6.8052 43 1 1.6798 -5.0970 8.3986 44 1 -3.6845 -5.4235 10.2822 45 1 -1.1538 -2.9739 6.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842108336.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:06 Heat of formation + Delta-G solvation = -83.394945 kcal Electronic energy + Delta-G solvation = -26564.854199 eV Core-core repulsion = 22741.173630 eV Total energy + Delta-G solvation = -3823.680569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81860 -41.04693 -39.77762 -38.35181 -37.24501 -34.32907 -34.26081 -33.63989 -31.59555 -30.36730 -29.32415 -28.17962 -27.37613 -25.54160 -23.60948 -23.56600 -22.64979 -21.81571 -20.27684 -19.89301 -19.50461 -17.96974 -17.58361 -17.46500 -16.89198 -16.80963 -16.52338 -16.04733 -15.96213 -15.49731 -15.35683 -15.21934 -15.06348 -14.62153 -14.60259 -14.19729 -14.12087 -13.89883 -13.50370 -13.40473 -13.26168 -13.07985 -12.74681 -12.66765 -12.62106 -12.19631 -12.10167 -12.05542 -11.92442 -11.83102 -11.59140 -11.49405 -11.39938 -10.82433 -10.18615 -9.64262 -9.41586 -8.97678 -8.52204 -6.20760 0.56482 0.65994 1.31728 1.39218 1.41787 1.47741 1.49917 2.14556 2.48160 2.77624 3.11424 3.35257 3.49125 3.78221 3.83629 3.93646 3.96269 4.07499 4.09049 4.09730 4.27096 4.27990 4.33775 4.44273 4.51641 4.56030 4.66495 4.73180 4.77091 4.80688 4.94913 5.01406 5.06507 5.07307 5.08349 5.18324 5.24992 5.32443 5.38893 5.47380 5.59715 5.63764 5.64878 5.90584 5.99561 6.26114 6.51553 6.92934 7.07885 7.69808 8.70559 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.002804 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.129597 B = 9984.260580 C =11368.030710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.142 3.858 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.118 4.118 6 C -0.134 4.134 7 C 0.094 3.906 8 N -0.603 5.603 9 C 0.510 3.490 10 O -0.559 6.559 11 C 0.036 3.964 12 O -0.324 6.324 13 C 0.164 3.836 14 C -0.268 4.268 15 C -0.024 4.024 16 C -0.234 4.234 17 C 0.150 3.850 18 O -0.221 6.221 19 C -0.416 4.416 20 H 0.092 0.908 21 C -0.016 4.016 22 N -0.914 5.914 23 Si 1.014 2.986 24 H -0.262 1.262 25 H -0.263 1.263 26 H -0.262 1.262 27 C -0.287 4.287 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.167 0.833 42 H 0.171 0.829 43 H 0.122 0.878 44 H 0.275 0.725 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.396 9.365 -23.116 31.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.166 4.166 5 C -0.156 4.156 6 C -0.172 4.172 7 C -0.028 4.028 8 N -0.338 5.338 9 C 0.298 3.702 10 O -0.437 6.437 11 C -0.041 4.041 12 O -0.237 6.237 13 C 0.119 3.881 14 C -0.287 4.287 15 C -0.041 4.041 16 C -0.253 4.253 17 C 0.098 3.902 18 O -0.127 6.127 19 C -0.492 4.492 20 H 0.110 0.890 21 C -0.214 4.214 22 N -0.552 5.552 23 Si 0.833 3.167 24 H -0.186 1.186 25 H -0.187 1.187 26 H -0.187 1.187 27 C -0.307 4.307 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.185 0.815 42 H 0.189 0.811 43 H 0.140 0.860 44 H 0.084 0.916 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.488 9.400 -22.839 30.851 hybrid contribution -1.305 0.009 0.229 1.325 sum 17.183 9.409 -22.610 29.916 Atomic orbital electron populations 1.22078 0.94616 1.01715 1.00916 1.21418 0.94281 0.96132 0.84136 0.89419 1.21995 0.97309 1.00566 0.96689 1.21538 0.94113 1.01368 0.98574 1.22019 1.02662 0.98794 0.93744 1.22290 0.77750 1.02435 1.00283 1.48176 1.08358 1.57693 1.19555 1.20453 0.86002 0.80135 0.83651 1.90805 1.19226 1.56829 1.76856 1.22830 0.89569 1.01487 0.90248 1.86082 1.36879 1.67570 1.33188 1.18710 0.93787 0.90330 0.85273 1.21225 0.94447 1.09349 1.03669 1.21000 0.98930 0.93204 0.91010 1.20525 0.90330 1.09761 1.04699 1.19602 0.90377 0.92008 0.88167 1.83951 1.15678 1.71394 1.41707 1.21776 0.80508 1.34994 1.11944 0.89025 1.26488 1.03982 0.95863 0.95065 1.70160 1.34016 1.36153 1.14847 0.84602 0.74528 0.78704 0.78827 1.18621 1.18716 1.18685 1.20297 0.99813 1.11522 0.99068 0.93044 0.91770 0.94429 0.92890 0.89333 0.90531 0.90500 0.92241 0.88084 0.88873 0.88118 0.86149 0.86431 0.81534 0.81136 0.86000 0.91574 0.87589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 7.61 71.98 0.55 -2.56 16 2 C 0.14 2.30 3.49 44.98 0.16 2.46 16 3 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.13 -1.43 5.37 30.67 0.16 -1.27 16 5 C -0.12 -0.79 5.88 30.62 0.18 -0.61 16 6 C -0.13 -0.83 6.10 30.82 0.19 -0.65 16 7 C 0.09 0.77 6.38 86.51 0.55 1.33 16 8 N -0.60 -10.39 2.97 -794.20 -2.36 -12.75 16 9 C 0.51 13.33 7.58 87.66 0.66 13.99 16 10 O -0.56 -20.36 12.07 16.00 0.19 -20.16 16 11 C 0.04 0.85 3.58 71.24 0.25 1.10 16 12 O -0.32 -12.05 9.67 -73.35 -0.71 -12.76 16 13 C 0.16 6.43 6.68 22.49 0.15 6.58 16 14 C -0.27 -7.91 9.04 22.40 0.20 -7.70 16 15 C -0.02 -0.72 10.03 22.24 0.22 -0.50 16 16 C -0.23 -9.78 9.99 22.41 0.22 -9.56 16 17 C 0.15 7.79 6.65 22.57 0.15 7.94 16 18 O -0.22 -13.81 9.76 -22.73 -0.22 -14.03 16 19 C -0.42 -25.76 9.49 67.92 0.64 -25.11 16 20 H 0.09 5.49 5.20 -2.91 -0.02 5.47 16 21 C -0.02 -0.93 5.49 84.83 0.47 -0.47 16 22 N -0.91 -57.23 13.67 21.61 0.30 -56.94 16 23 Si 1.01 45.69 29.55 68.60 2.03 47.71 16 24 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 27 C -0.29 -14.16 9.10 22.48 0.20 -13.95 16 28 H 0.05 1.48 6.54 -2.39 -0.02 1.46 16 29 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.04 1.06 6.96 -2.39 -0.02 1.04 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.10 0.54 5.93 -2.39 -0.01 0.53 16 39 H 0.12 1.99 7.21 -2.39 -0.02 1.97 16 40 H 0.12 2.03 7.45 -2.38 -0.02 2.01 16 41 H 0.17 3.06 6.29 -2.91 -0.02 3.04 16 42 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 43 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.11 5.74 5.63 -2.91 -0.02 5.72 16 Total: -1.00 -84.62 360.38 5.20 -79.42 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 1.00 Total: 18.47 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 4.97 Total: -28.97 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -2.06 Total: -69.68 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -0.74 Total: -46.95 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -84.62 5.20 -79.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108336.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.971 kcal (2) G-P(sol) polarization free energy of solvation -84.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds