Wall clock time and date at job start Tue Mar 31 2020 13:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.69875 * 2 1 4 4 C 1.53619 * 109.66875 * 120.59316 * 2 1 3 5 5 C 1.53038 * 109.24198 * 174.55080 * 4 2 1 6 6 C 1.53043 * 109.53790 * 298.51162 * 5 4 2 7 7 C 1.53188 * 109.31131 * 61.37070 * 6 5 4 8 8 N 1.46923 * 109.58602 * 239.65093 * 2 1 3 9 9 C 1.34782 * 120.63309 * 6.62183 * 8 2 1 10 10 O 1.21275 * 119.99902 * 354.89567 * 9 8 2 11 11 C 1.50701 * 120.00081 * 174.89605 * 9 8 2 12 12 O 1.42897 * 109.47302 * 180.02562 * 11 9 8 13 13 C 1.35892 * 117.00293 * 179.97438 * 12 11 9 14 14 C 1.38825 * 120.01979 * 359.73213 * 13 12 11 15 15 C 1.38190 * 120.07923 * 179.71796 * 14 13 12 16 16 C 1.38151 * 120.12556 * 0.55131 * 15 14 13 17 17 C 1.38896 * 120.03914 * 359.71989 * 16 15 14 18 18 O 1.35753 * 120.03961 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99796 * 185.54876 * 18 17 16 20 20 H 1.08009 * 119.99990 * 354.91796 * 19 18 17 21 21 C 1.38652 * 119.99839 * 174.91368 * 19 18 17 22 22 N 1.31556 * 120.00280 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99830 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47334 * 90.00243 * 23 21 19 25 25 H 1.48501 * 109.47009 * 210.00215 * 23 21 19 26 26 H 1.48501 * 109.47026 * 330.00139 * 23 21 19 27 27 C 1.38571 * 120.02227 * 179.97438 * 13 12 11 28 28 H 1.09007 * 109.46642 * 176.77650 * 1 2 3 29 29 H 1.08992 * 109.47309 * 296.77086 * 1 2 3 30 30 H 1.08997 * 109.47460 * 56.77942 * 1 2 3 31 31 H 1.09000 * 109.63004 * 54.56106 * 4 2 1 32 32 H 1.09000 * 109.43475 * 294.42382 * 4 2 1 33 33 H 1.08998 * 109.45745 * 178.49127 * 5 4 2 34 34 H 1.08999 * 109.44678 * 58.52864 * 5 4 2 35 35 H 1.08992 * 109.50001 * 301.41420 * 6 5 4 36 36 H 1.09004 * 109.51902 * 181.33062 * 6 5 4 37 37 H 1.08999 * 109.58318 * 185.57966 * 7 6 5 38 38 H 1.08995 * 109.59131 * 65.14946 * 7 6 5 39 39 H 1.09004 * 109.46846 * 299.99853 * 11 9 8 40 40 H 1.08997 * 109.47245 * 59.99595 * 11 9 8 41 41 H 1.08001 * 119.95900 * 359.97438 * 14 13 12 42 42 H 1.08003 * 119.93873 * 180.29545 * 15 14 13 43 43 H 1.08003 * 119.98294 * 179.70156 * 16 15 14 44 44 H 0.96995 * 119.99781 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.06299 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0471 -0.7362 1.2452 5 6 3.5713 -0.8496 1.1675 6 6 3.9616 -1.6626 -0.0691 7 6 3.4657 -0.9417 -1.3265 8 7 2.0225 -0.6994 -1.1945 9 6 1.1674 -1.1060 -2.1537 10 8 -0.0280 -0.9790 -1.9938 11 6 1.6968 -1.7185 -3.4248 12 8 0.6039 -2.0648 -4.2779 13 6 0.9106 -2.6320 -5.4741 14 6 2.2376 -2.8455 -5.8216 15 6 2.5506 -3.4276 -7.0353 16 6 1.5450 -3.7883 -7.9112 17 6 0.2159 -3.5718 -7.5710 18 8 -0.7722 -3.9258 -8.4320 19 6 -2.0316 -3.5844 -8.0921 20 1 -2.2270 -3.1270 -7.1333 21 6 -3.0756 -3.8205 -8.9733 22 7 -2.8377 -4.3780 -10.1409 23 14 -4.8205 -3.3482 -8.5021 24 1 -5.0926 -1.9563 -8.9421 25 1 -5.7784 -4.2719 -9.1612 26 1 -4.9775 -3.4412 -7.0284 27 6 -0.1008 -2.9930 -6.3499 28 1 -0.3633 -1.0261 -0.0578 29 1 -0.3633 0.4628 0.9174 30 1 -0.3634 0.5630 -0.8597 31 1 1.6098 -1.7337 1.2888 32 1 1.7689 -0.1772 2.1386 33 1 3.9444 -1.3478 2.0622 34 1 4.0063 0.1474 1.0988 35 1 3.5063 -2.6513 -0.0131 36 1 5.0461 -1.7632 -0.1113 37 1 3.6533 -1.5634 -2.2019 38 1 3.9877 0.0092 -1.4324 39 1 2.3408 -1.0008 -3.9332 40 1 2.2694 -2.6145 -3.1854 41 1 3.0260 -2.5602 -5.1409 42 1 3.5836 -3.5970 -7.3013 43 1 1.7925 -4.2386 -8.8611 44 1 -3.5681 -4.5435 -10.7572 45 1 -1.1336 -2.8244 -6.0827 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842108338.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:09 Heat of formation + Delta-G solvation = -61.086282 kcal Electronic energy + Delta-G solvation = -26547.124784 eV Core-core repulsion = 22724.411591 eV Total energy + Delta-G solvation = -3822.713193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.84227 -39.53486 -38.19096 -37.38109 -35.61313 -33.50198 -33.00169 -32.25130 -30.11918 -28.70347 -28.29398 -27.28497 -25.33194 -24.88845 -22.68399 -21.90929 -21.55818 -20.89436 -19.25982 -18.32052 -17.81848 -16.79280 -16.48366 -16.28115 -15.57723 -15.23178 -15.07617 -15.00548 -14.77380 -14.51798 -14.24764 -14.03932 -13.70013 -13.60640 -13.14943 -13.09605 -12.76799 -12.59387 -12.38870 -12.33824 -12.08806 -11.69877 -11.60136 -11.41254 -11.36024 -11.09482 -11.04651 -10.99964 -10.97397 -10.58356 -10.39615 -10.34696 -9.45299 -9.13055 -8.84628 -8.82399 -7.73360 -7.27858 -6.44542 -4.03640 2.19587 2.30382 2.41034 2.44201 3.17528 3.18901 3.23943 3.59409 4.00288 4.25408 4.31053 4.40945 4.52694 4.54032 4.63224 4.84414 4.88846 4.99252 5.02554 5.05885 5.10569 5.22045 5.25213 5.28684 5.42020 5.46806 5.52600 5.57461 5.61919 5.65130 5.71977 5.84855 6.03643 6.08799 6.13355 6.26349 6.33784 6.48705 6.65099 6.98990 7.07247 7.11204 7.19360 7.42726 7.53781 7.97494 8.01863 8.05237 9.01469 9.67861 10.72961 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.002788 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.588802 B =10040.706099 C =11438.534314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.146 3.854 3 H 0.072 0.928 4 C -0.133 4.133 5 C -0.120 4.120 6 C -0.137 4.137 7 C 0.104 3.896 8 N -0.612 5.612 9 C 0.518 3.482 10 O -0.503 6.503 11 C 0.045 3.955 12 O -0.295 6.295 13 C 0.165 3.835 14 C -0.300 4.300 15 C -0.043 4.043 16 C -0.219 4.219 17 C 0.184 3.816 18 O -0.169 6.169 19 C -0.393 4.393 20 H 0.095 0.905 21 C 0.041 3.959 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.265 1.265 27 C -0.260 4.260 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.271 0.729 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.142 7.707 20.831 26.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.044 3.956 3 H 0.090 0.910 4 C -0.171 4.171 5 C -0.158 4.158 6 C -0.175 4.175 7 C -0.019 4.019 8 N -0.349 5.349 9 C 0.305 3.695 10 O -0.377 6.377 11 C -0.034 4.034 12 O -0.208 6.208 13 C 0.120 3.880 14 C -0.320 4.320 15 C -0.062 4.062 16 C -0.239 4.239 17 C 0.129 3.871 18 O -0.072 6.072 19 C -0.469 4.469 20 H 0.113 0.887 21 C -0.164 4.164 22 N -0.496 5.496 23 Si 0.765 3.235 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.190 1.190 27 C -0.280 4.280 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.080 0.920 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.120 7.613 20.544 26.065 hybrid contribution -0.379 0.222 0.291 0.527 sum 13.741 7.835 20.835 26.159 Atomic orbital electron populations 1.22244 0.92313 1.04161 1.00997 1.21393 0.96036 0.94739 0.83436 0.91037 1.22109 0.95841 1.01620 0.97536 1.21520 0.95819 1.00476 0.97961 1.21930 1.01317 0.99700 0.94539 1.21813 0.80262 1.00829 0.99008 1.48052 1.07127 1.59141 1.20603 1.20209 0.86690 0.78450 0.84164 1.90811 1.15306 1.53157 1.78445 1.22394 0.90252 1.00669 0.90095 1.86109 1.31895 1.75997 1.26781 1.18671 0.93249 0.92407 0.83678 1.20585 0.93891 1.16279 1.01232 1.20382 0.97743 0.95484 0.92557 1.20170 0.90017 1.11679 1.02009 1.19024 0.89386 0.90327 0.88366 1.84000 1.14796 1.66691 1.41697 1.21417 0.80082 1.41787 1.03579 0.88726 1.25301 0.99834 0.96406 0.94814 1.70040 1.33118 1.39201 1.07252 0.85702 0.80052 0.78601 0.79118 1.19778 1.20232 1.18967 1.20327 0.99285 1.13035 0.95361 0.90894 0.93827 0.90718 0.91282 0.90733 0.91549 0.91706 0.91227 0.90423 0.89589 0.90921 0.89450 0.89549 0.87263 0.86681 0.86294 0.91960 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 7.60 37.16 0.28 -1.29 16 2 C 0.15 1.31 3.51 -67.38 -0.24 1.08 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -0.92 5.40 -26.39 -0.14 -1.06 16 5 C -0.12 -0.65 5.88 -26.69 -0.16 -0.80 16 6 C -0.14 -0.75 6.08 -26.61 -0.16 -0.91 16 7 C 0.10 0.67 6.33 -3.71 -0.02 0.65 16 8 N -0.61 -6.03 2.97 -164.97 -0.49 -6.52 16 9 C 0.52 7.06 7.68 -10.98 -0.08 6.98 16 10 O -0.50 -8.81 11.90 -14.35 -0.17 -8.98 16 11 C 0.04 0.60 3.62 36.01 0.13 0.73 16 12 O -0.29 -5.61 9.67 -39.31 -0.38 -5.99 16 13 C 0.16 3.33 6.68 -39.24 -0.26 3.06 16 14 C -0.30 -5.18 9.04 -39.38 -0.36 -5.54 16 15 C -0.04 -0.76 10.03 -39.63 -0.40 -1.16 16 16 C -0.22 -4.65 9.99 -39.37 -0.39 -5.05 16 17 C 0.18 4.57 6.65 -39.13 -0.26 4.31 16 18 O -0.17 -4.91 9.76 0.03 0.00 -4.91 16 19 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 20 H 0.10 2.58 5.20 -52.48 -0.27 2.31 16 21 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 22 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 23 Si 0.94 21.21 29.55 -169.99 -5.02 16.18 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 C -0.26 -6.12 9.10 -39.25 -0.36 -6.48 16 28 H 0.07 0.98 6.79 -51.92 -0.35 0.63 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.01 6.71 -51.93 -0.35 0.66 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.49 5.96 -51.93 -0.31 0.18 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.97 7.61 -51.93 -0.40 0.58 16 40 H 0.09 0.95 7.02 -51.93 -0.36 0.59 16 41 H 0.11 1.46 6.29 -52.49 -0.33 1.13 16 42 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 43 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.14 3.34 5.64 -52.49 -0.30 3.04 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -33.90 360.32 -8.55 -42.45 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.45 Total: 2.49 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -2.22 Total: -15.42 kcal Atomic # 7 Polarization: -31.53 SS G_CDS: 0.27 Total: -31.27 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.55 Total: -19.87 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.90 -8.55 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842108338.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.637 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds